Examples with Gene binnie.core.genetics.Gene used on opensource projects

Example 11 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class WindowGenesis method refreshTemplate.

private void refreshTemplate(@Nullable IChromosomeType selection) {
    List<Gene> genes = new ArrayList<>();
    IChromosomeType[] chromosomeTypes = Binnie.GENETICS.getChromosomeMap(this.root).keySet().toArray(new IChromosomeType[0]);
    for (IChromosomeType type : chromosomeTypes) {
        IAllele allele = this.template[type.ordinal()];
        if (allele == null) {
            throw new NullPointerException("Allele missing for Chromosome " + type.getName());
        }
        genes.add(new Gene(allele, type, this.root));
    }
    geneList.setOptions(genes);
    if (selection != null) {
        this.geneList.setValue(new Gene(this.template[selection.ordinal()], selection, this.root));
    } else {
        this.geneOptions.setOptions(new ArrayList<>());
    }
    this.refreshPickup();
}

Example 12 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class IsolatorLogic method onFinishTask.

@Override
protected void onFinishTask() {
    super.onFinishTask();
    final Random rand = this.getMachine().getWorld().rand;
    MachineUtil util = this.getUtil();
    final ISpeciesRoot root = AlleleManager.alleleRegistry.getSpeciesRoot(util.getStack(Isolator.SLOT_TARGET));
    if (root == null) {
        return;
    }
    final IIndividual individual = root.getMember(util.getStack(Isolator.SLOT_TARGET));
    if (individual == null) {
        return;
    }
    IChromosomeType[] karyotype = root.getKaryotype();
    IChromosomeType chromosome = karyotype[rand.nextInt(karyotype.length)];
    IGenome genome = individual.getGenome();
    IAllele allele = rand.nextBoolean() ? genome.getActiveAllele(chromosome) : genome.getInactiveAllele(chromosome);
    Gene gene = Gene.create(allele, chromosome, root);
    final ItemStack serum = ItemSequence.create(gene);
    util.setStack(Isolator.SLOT_RESULUT, serum);
    util.decreaseStack(Isolator.SLOT_SEQUENCER_VIAL, 1);
    if (rand.nextFloat() < TARGET_LOSS_CHANCE) {
        util.decreaseStack(Isolator.SLOT_TARGET, 1);
    }
    util.drainTank(Isolator.TANK_ETHANOL, ETHANOL_PER_PROCESS);
}

Example 13 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class ToleranceSystem method alter.

public ItemStack alter(final ItemStack stack, final ItemStack acc) {
    final Random rand = new Random();
    final float effect = this.type.getEffect(acc);
    if (rand.nextFloat() > Math.abs(effect)) {
        return stack;
    }
    final IIndividual member = AlleleManager.alleleRegistry.getIndividual(stack);
    final IGenome genome = member.getGenome();
    final IAlleleTolerance tolAllele = (IAlleleTolerance) genome.getActiveAllele(this.chromosomeType);
    final Tolerance tol = Tolerance.get(tolAllele.getValue());
    final Tolerance newTol = Acclimatiser.alterTolerance(tol, effect);
    if (rand.nextFloat() > 1.0f / (-newTol.getBounds()[0] + newTol.getBounds()[1])) {
        return stack;
    }
    final ISpeciesRoot root = AlleleManager.alleleRegistry.getSpeciesRoot(stack);
    boolean setPrimary = rand.nextBoolean();
    boolean setSecondary = !setPrimary;
    Gene gene = new Gene(newTol.getAllele(), this.chromosomeType, root);
    Splicer.setGene(gene, stack, setPrimary, setSecondary);
    return stack;
}

Example 14 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class InoculatorRecipeMaker method create.

public static List<InoculatorRecipeWrapper> create() {
    List<InoculatorRecipeWrapper> recipes = new ArrayList<>();
    for (IBreedingSystem system : Binnie.GENETICS.getActiveSystems()) {
        ISpeciesRoot root = system.getSpeciesRoot();
        IChromosomeType speciesChromosomeType = root.getSpeciesChromosomeType();
        IAllele[] defaultTemplate = root.getDefaultTemplate();
        IIndividual individual = root.templateAsIndividual(defaultTemplate);
        for (ISpeciesType speciesType : system.getActiveTypes()) {
            if (system.isDNAManipulable(speciesType)) {
                ItemStack memberStack = root.getMemberStack(individual, speciesType);
                memberStack.setItemDamage(OreDictionary.WILDCARD_VALUE);
                IAllele species = defaultTemplate[speciesChromosomeType.ordinal()];
                ItemStack serum = ItemSerum.create(new Gene(species, speciesChromosomeType, root));
                // set fully charged
                serum.setItemDamage(0);
                recipes.add(new InoculatorRecipeWrapper(serum, memberStack));
                recipes.add(new SplicerRecipeWrapper(serum, memberStack));
                ItemStack serumArray = ItemSerumArray.create(new Gene(species, speciesChromosomeType, root));
                // set fully charged
                serumArray.setItemDamage(0);
                for (IChromosomeType chromosomeType : root.getKaryotype()) {
                    if (chromosomeType != speciesChromosomeType) {
                        IAllele allele = defaultTemplate[chromosomeType.ordinal()];
                        Engineering.addGene(serumArray, new Gene(allele, chromosomeType, root));
                    }
                }
                recipes.add(new InoculatorRecipeWrapper(serumArray, memberStack));
                recipes.add(new SplicerRecipeWrapper(serumArray, memberStack));
            }
        }
    }
    return recipes;
}

Example 15 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class IsolatorRecipeMaker method create.

public static List<IsolatorRecipeWrapper> create() {
    List<IsolatorRecipeWrapper> recipes = new ArrayList<>();
    Collection<ISpeciesRoot> roots = AlleleManager.alleleRegistry.getSpeciesRoot().values();
    for (ISpeciesRoot root : roots) {
        ISpeciesType[] speciesTypes = root.getIconType().getClass().getEnumConstants();
        IChromosomeType speciesChromosomeType = root.getSpeciesChromosomeType();
        IAllele[] defaultTemplate = root.getDefaultTemplate();
        IIndividual individual = root.templateAsIndividual(defaultTemplate);
        for (ISpeciesType speciesType : speciesTypes) {
            ItemStack memberStack = root.getMemberStack(individual, speciesType);
            memberStack.setItemDamage(OreDictionary.WILDCARD_VALUE);
            IAllele species = defaultTemplate[speciesChromosomeType.ordinal()];
            ItemStack filledSequence = ItemSequence.create(new Gene(species, speciesChromosomeType, root), false);
            IsolatorRecipeWrapper recipeWrapper = new IsolatorRecipeWrapper(memberStack, filledSequence);
            recipes.add(recipeWrapper);
        }
    }
    return recipes;
}