Examples with Gene binnie.core.genetics.Gene used on opensource projects

Example 16 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class GeneArrayItem method readFromNBT.

@Override
public void readFromNBT(@Nullable NBTTagCompound nbt) {
    genes.clear();
    if (nbt == null) {
        return;
    }
    NBTTagList list = nbt.getTagList(GENES_NBT, 10);
    for (int i = 0; i < list.tagCount(); ++i) {
        Gene gene = Gene.create(list.getCompoundTagAt(i));
        genes.add(gene);
    }
}

Example 17 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class GeneTracker method readFromNBT.

@Override
public void readFromNBT(NBTTagCompound nbt) {
    for (ISpeciesRoot root : AlleleManager.alleleRegistry.getSpeciesRoot().values()) {
        if (!nbt.hasKey(root.getUID())) {
            continue;
        }
        NBTTagCompound nbtRoot = nbt.getCompoundTag(root.getUID());
        for (IChromosomeType chromo : root.getKaryotype()) {
            if (!nbtRoot.hasKey(String.valueOf(chromo.ordinal()))) {
                continue;
            }
            NBTTagList nbtChromo = nbtRoot.getTagList(String.valueOf(chromo.ordinal()), 8);
            for (int i = 0; i < nbtChromo.tagCount(); ++i) {
                String uid = nbtChromo.getStringTagAt(i);
                IAllele allele = AlleleManager.alleleRegistry.getAllele(uid);
                if (allele == null) {
                    continue;
                }
                Gene gene = new Gene(allele, chromo, root);
                if (!discoveredGenes.contains(gene)) {
                    discoveredGenes.add(gene);
                }
            }
        }
    }
}

Example 18 with Gene

use of binnie.core.genetics.Gene in project Binnie by ForestryMC.

the class SequencerItem method create.

@Nullable
public static SequencerItem create(ItemStack itemStack) {
    NBTTagCompound nbt = itemStack.getTagCompound();
    if (nbt != null && nbt.hasKey("gene", Constants.NBT.TAG_COMPOUND) && nbt.hasKey("seq", Constants.NBT.TAG_BYTE) && nbt.hasKey("ana")) {
        NBTTagCompound geneNbt = nbt.getCompoundTag("gene");
        Gene gene = Gene.create(geneNbt);
        SequencerItem sequencerItem = new SequencerItem(gene);
        sequencerItem.sequenced = nbt.getByte("seq");
        sequencerItem.analysed = nbt.getBoolean("ana");
        return sequencerItem;
    }
    return null;
}