Examples with MSH ca.uhn.hl7v2.model.v26.segment.MSH used on opensource projects

Example 51 with MSH

use of ca.uhn.hl7v2.model.v26.segment.MSH in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processMessage_shouldSetValue_NumericForObsIfQuestionDatatypeIsNumeric.

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldSetValue_NumericForObsIfQuestionDatatypeIsNumeric() throws Exception {
    ObsService os = Context.getObsService();
    String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||7^^^^||Collet^Test^Chebaskwony||\r" + "PV1||O|1^Unknown Location||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|NM|5497^CD4, BY FACS^99DCT||450|||||||||20080206";
    // the expected question for the obs in the hl7 message has to be
    // numeric
    Assert.assertEquals("Numeric", Context.getConceptService().getConcept(5497).getDatatype().getName());
    List<Obs> oldList = os.getObservationsByPersonAndConcept(new Person(7), new Concept(5497));
    Message hl7message = parser.parse(hl7string);
    router.processMessage(hl7message);
    List<Obs> newList = os.getObservationsByPersonAndConcept(new Person(7), new Concept(5497));
    Obs newObservation = null;
    for (Obs newObs : newList) {
        if (!oldList.contains(newObs) && !newObs.isObsGrouping()) {
            newObservation = newObs;
        }
    }
    Assert.assertEquals(450, newObservation.getValueNumeric().intValue());
}

Example 52 with MSH

use of ca.uhn.hl7v2.model.v26.segment.MSH in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processNK1_shouldFailIfTheRelationshipIdentifierIsFormattedImproperly.

/**
 * @see ORUR01Handler#processNK1(Patient,NK1)
 */
@Test(expected = HL7Exception.class)
public void processNK1_shouldFailIfTheRelationshipIdentifierIsFormattedImproperly() throws Exception {
    // process a message with an invalid relationship identifier format
    // the patient that is the focus of
    Patient patient = new Patient(3);
    // this hl7 message
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r" + "PID|||3^^^^||Beren^John^Bondo||\r" + "NK1|1|Jones^Jane^Lee^^RN|3C^Parent^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r" + "ORC|RE||||||||20090728165937|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r" + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r" + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
    ORUR01Handler oruHandler = new ORUR01Handler();
    Message hl7message = parser.parse(hl7String);
    ORU_R01 oru = (ORU_R01) hl7message;
    List<NK1> nk1List = oruHandler.getNK1List(oru);
    for (NK1 nk1 : nk1List) oruHandler.processNK1(patient, nk1);
}

Example 53 with MSH

use of ca.uhn.hl7v2.model.v26.segment.MSH in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processMessage_shouldCreateAnEncounterAndFindTheProviderByUuid.

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldCreateAnEncounterAndFindTheProviderByUuid() throws Exception {
    executeDataSet("org/openmrs/api/include/ProviderServiceTest-initial.xml");
    int patientId = 2;
    Patient patient = new Patient(patientId);
    List<Encounter> encForPatient1 = Context.getEncounterService().getEncountersByPatient(patient);
    ProviderService ps = Context.getProviderService();
    Provider provider = ps.getProviderByIdentifier("8a760");
    String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||" + patientId + "^^^^||Hornblower^Horatio^Test||\r" + "PV1||O|1^Unknown Location||||ba4781f4-6b94-11e0-93c3-18a905e044dc^name^^^^^^^&" + HL7Constants.PROVIDER_ASSIGNING_AUTH_PROV_UUID + "&L|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT";
    Message hl7message = parser.parse(hl7string);
    router.processMessage(hl7message);
    // check for the new encounter
    List<Encounter> encForPatient2 = Context.getEncounterService().getEncountersByPatient(patient);
    encForPatient2.removeAll(encForPatient1);
    Assert.assertTrue(encForPatient2.size() == 1);
    Provider newProvider = encForPatient2.get(0).getProvidersByRole(Context.getEncounterService().getEncounterRoleByUuid(EncounterRole.UNKNOWN_ENCOUNTER_ROLE_UUID)).iterator().next();
    Assert.assertEquals(4, newProvider.getId().intValue());
}

Example 54 with MSH

use of ca.uhn.hl7v2.model.v26.segment.MSH in project pentaho-kettle by pentaho.

the class HL7MLLPInput method execute.

public Result execute(Result previousResult, int nr) {
    Result result = previousResult;
    try {
        String serverName = environmentSubstitute(server);
        int portNumber = Integer.parseInt(environmentSubstitute(port));
        String messageVariable = environmentSubstitute(messageVariableName);
        String messageTypeVariable = environmentSubstitute(messageTypeVariableName);
        String versionVariable = environmentSubstitute(versionVariableName);
        MLLPSocketCacheEntry entry = MLLPSocketCache.getInstance().getServerSocketStreamSource(serverName, portNumber);
        if (entry.getJobListener() != null) {
            parentJob.addJobListener(entry.getJobListener());
        }
        MLLPTransport transport = entry.getTransport();
        // 
        synchronized (transport) {
            Transportable transportable = transport.doReceive();
            String message = transportable.getMessage();
            logDetailed("Received message: " + message);
            parentJob.setVariable(messageVariable, message);
            // Parse the message and extract the control ID.
            // 
            Parser parser = new GenericParser();
            ValidationContext validationContext = new NoValidation();
            parser.setValidationContext(validationContext);
            Message msg = parser.parse(message);
            Structure structure = msg.get("MSH");
            String messageType = null;
            String version = msg.getVersion();
            if (structure instanceof ca.uhn.hl7v2.model.v21.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v21.segment.MSH) structure).getMESSAGETYPE().encode();
            } else if (structure instanceof ca.uhn.hl7v2.model.v22.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v22.segment.MSH) structure).getMessageType().encode();
            } else if (structure instanceof ca.uhn.hl7v2.model.v23.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v23.segment.MSH) structure).getMessageType().encode();
            } else if (structure instanceof ca.uhn.hl7v2.model.v231.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v231.segment.MSH) structure).getMessageType().getMessageStructure().getValue();
            } else if (structure instanceof ca.uhn.hl7v2.model.v24.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v24.segment.MSH) structure).getMessageType().getMessageStructure().getValue();
            } else if (structure instanceof ca.uhn.hl7v2.model.v25.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v25.segment.MSH) structure).getMessageType().getMessageStructure().getValue();
            } else if (structure instanceof ca.uhn.hl7v2.model.v251.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v251.segment.MSH) structure).getMessageType().getMessageStructure().getValue();
            } else if (structure instanceof ca.uhn.hl7v2.model.v26.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v26.segment.MSH) structure).getMessageType().getMessageStructure().getValue();
            } else {
                logError("This job entry does not support the HL7 dialect used. Found MSH class: " + structure.getClass().getName());
            }
            if (!Utils.isEmpty(messageTypeVariable)) {
                parentJob.setVariable(messageTypeVariable, messageType);
            }
            if (!Utils.isEmpty(versionVariable)) {
                parentJob.setVariable(versionVariable, version);
            }
        }
        // All went well..
        // 
        result.setNrErrors(0);
        result.setResult(true);
    } catch (Exception e) {
        log.logError(BaseMessages.getString(PKG, "HL7MLLPInput.Exception.UnexpectedError"), e);
        result.setNrErrors(1);
        result.setResult(false);
    }
    return result;
}

Example 55 with MSH

use of ca.uhn.hl7v2.model.v26.segment.MSH in project camel by apache.

the class HL7DataFormat method unmarshal.

public Object unmarshal(Exchange exchange, InputStream inputStream) throws Exception {
    byte[] body = ExchangeHelper.convertToMandatoryType(exchange, byte[].class, inputStream);
    String charsetName = HL7Charset.getCharsetName(body, guessCharsetName(body, exchange));
    String bodyAsString = new String(body, charsetName);
    Message message = HL7Converter.parse(bodyAsString, parser);
    // add MSH fields as message out headers
    Terser terser = new Terser(message);
    for (Map.Entry<String, String> entry : HEADER_MAP.entrySet()) {
        exchange.getOut().setHeader(entry.getKey(), terser.get(entry.getValue()));
    }
    exchange.getOut().setHeader(HL7_CONTEXT, hapiContext);
    exchange.getOut().setHeader(Exchange.CHARSET_NAME, charsetName);
    return message;
}