Examples with MathModelWindowManager cbit.vcell.client.MathModelWindowManager used on opensource projects

Example 1 with MathModelWindowManager

use of cbit.vcell.client.MathModelWindowManager in project vcell by virtualcell.

the class NewName method run.

/**
 * Insert the method's description here.
 * Creation date: (5/31/2004 6:04:14 PM)
 * @param hashTable java.util.Hashtable
 * @param clientWorker cbit.vcell.desktop.controls.ClientWorker
 */
public void run(Hashtable<String, Object> hashTable) throws java.lang.Exception {
    DocumentWindowManager documentWindowManager = (DocumentWindowManager) hashTable.get(CommonTask.DOCUMENT_WINDOW_MANAGER.name);
    VCDocument document = documentWindowManager.getVCDocument();
    if (document.getDocumentType() == VCDocumentType.MATHMODEL_DOC) {
        if (((MathModelWindowManager) documentWindowManager).hasUnappliedChanges()) {
            String msg = "Changes have been made in VCML Editor, please click \"Apply Changes\" or \"Cancel\" to proceed.";
            PopupGenerator.showErrorDialog(documentWindowManager, msg);
            throw UserCancelException.CANCEL_UNAPPLIED_CHANGES;
        }
    }
    MDIManager mdiManager = (MDIManager) hashTable.get("mdiManager");
    String oldName = document.getName();
    User user = mdiManager.getFocusedWindowManager().getRequestManager().getDocumentManager().getUser();
    DocumentManager documentManager = mdiManager.getFocusedWindowManager().getRequestManager().getDocumentManager();
    VCDocumentInfo[] vcDocumentInfos = new VCDocumentInfo[0];
    String documentTypeDescription = "unknown";
    if (document.getDocumentType() == VCDocumentType.MATHMODEL_DOC) {
        documentTypeDescription = "MathModel";
        vcDocumentInfos = documentManager.getMathModelInfos();
    } else if (document.getDocumentType() == VCDocumentType.BIOMODEL_DOC) {
        documentTypeDescription = "BioModel";
        vcDocumentInfos = documentManager.getBioModelInfos();
    } else if (document.getDocumentType() == VCDocumentType.GEOMETRY_DOC) {
        documentTypeDescription = "Geometry";
        vcDocumentInfos = documentManager.getGeometryInfos();
    }
    String newDocumentName = (oldName == null ? "New" + documentTypeDescription : oldName);
    while (true) {
        newDocumentName = mdiManager.getDatabaseWindowManager().showSaveDialog(document.getDocumentType(), (Component) hashTable.get("currentDocumentWindow"), newDocumentName);
        if (newDocumentName == null || newDocumentName.trim().length() == 0) {
            newDocumentName = null;
            DialogUtils.showWarningDialog((Component) hashTable.get("currentDocumentWindow"), "New " + documentTypeDescription + " name cannot be empty.");
            continue;
        }
        // Check name conflict
        boolean bNameConflict = false;
        for (int i = 0; i < vcDocumentInfos.length; i++) {
            if (vcDocumentInfos[i].getVersion().getOwner().compareEqual(user)) {
                if (vcDocumentInfos[i].getVersion().getName().equals(newDocumentName)) {
                    bNameConflict = true;
                    break;
                }
            }
        }
        if (bNameConflict) {
            DialogUtils.showWarningDialog((Component) hashTable.get("currentDocumentWindow"), "A " + documentTypeDescription + " with name '" + newDocumentName + "' already exists.  Choose a different name.");
            continue;
        } else {
            break;
        }
    }
    hashTable.put("newName", newDocumentName);
}

Example 2 with MathModelWindowManager

use of cbit.vcell.client.MathModelWindowManager in project vcell by virtualcell.

the class VCellClientDataServiceImpl method getSimsFromOpenModels.

@Override
public List<SimulationDataSetRef> getSimsFromOpenModels() {
    ArrayList<SimulationDataSetRef> simulationDataSetRefs = new ArrayList<SimulationDataSetRef>();
    for (TopLevelWindowManager windowManager : vcellClient.getMdiManager().getWindowManagers()) {
        Simulation[] simulations = null;
        VCDocument modelDocument = null;
        if (windowManager instanceof BioModelWindowManager) {
            BioModelWindowManager selectedBioWindowManager = (BioModelWindowManager) windowManager;
            BioModel bioModel = selectedBioWindowManager.getBioModel();
            simulations = bioModel.getSimulations();
            modelDocument = bioModel;
        // simOwnerCount = bioModel.getNumSimulationContexts();
        } else if (windowManager instanceof MathModelWindowManager) {
            MathModelWindowManager selectedMathWindowManager = (MathModelWindowManager) windowManager;
            MathModel mathModel = selectedMathWindowManager.getMathModel();
            simulations = mathModel.getSimulations();
            modelDocument = mathModel;
        // simOwnerCount = 1;
        }
        if (simulations != null) {
            for (Simulation simulation : simulations) {
                if (!isVtkSupported(simulation)) {
                    continue;
                }
                Origin origin = simulation.getMathDescription().getGeometry().getOrigin();
                Extent extent = simulation.getMathDescription().getGeometry().getExtent();
                SimulationInfo simInfo = simulation.getSimulationInfo();
                SimulationStatus simStatus = vcellClient.getRequestManager().getServerSimulationStatus(simInfo);
                for (int jobIndex = 0; jobIndex < simulation.getScanCount(); jobIndex++) {
                    if (simStatus != null && simStatus.getHasData()) {
                        SimulationDataSetRef simulationDataSetReference = VCellClientDataServiceImpl.createSimulationDataSetRef(simulation, modelDocument, jobIndex, false);
                        simulationDataSetRefs.add(simulationDataSetReference);
                    }
                }
            }
        }
    }
    File localSimDir = ResourceUtil.getLocalSimDir(User.tempUser.getName());
    String[] simtaskFilenames = localSimDir.list((dir, name) -> (name.endsWith(".simtask.xml")));
    for (String simtaskFilename : simtaskFilenames) {
        try {
            SimulationTask simTask = XmlHelper.XMLToSimTask(org.apache.commons.io.FileUtils.readFileToString(new File(localSimDir, simtaskFilename)));
            VCDocument modelDocument = null;
            SimulationDataSetRef simulationDataSetReference = VCellClientDataServiceImpl.createSimulationDataSetRef(simTask.getSimulation(), modelDocument, simTask.getSimulationJob().getJobIndex(), true);
            simulationDataSetRefs.add(simulationDataSetReference);
        } catch (ExpressionException | XmlParseException | IOException e) {
            e.printStackTrace();
        }
    }
    return simulationDataSetRefs;
}

Example 3 with MathModelWindowManager

use of cbit.vcell.client.MathModelWindowManager in project vcell by virtualcell.

the class CheckUnchanged method run.

/**
 * Insert the method's description here.
 * Creation date: (5/31/2004 6:04:14 PM)
 * @param hashTable java.util.Hashtable
 * @param clientWorker cbit.vcell.desktop.controls.ClientWorker
 */
public void run(Hashtable<String, Object> hashTable) throws java.lang.Exception {
    DocumentWindowManager documentWindowManager = (DocumentWindowManager) hashTable.get(CommonTask.DOCUMENT_WINDOW_MANAGER.name);
    DocumentManager documentManager = (DocumentManager) hashTable.get(CommonTask.DOCUMENT_MANAGER.name);
    // JFrame currentDocumentWindow = (JFrame)hashTable.get("currentDocumentWindow");
    if (documentWindowManager.getVCDocument().getDocumentType() == VCDocumentType.MATHMODEL_DOC) {
        if (((MathModelWindowManager) documentWindowManager).hasUnappliedChanges()) {
            String msg = "Changes have been made in VCML Editor, please click \"Apply Changes\" or \"Cancel\" to proceed.";
            PopupGenerator.showErrorDialog(documentWindowManager, msg);
            throw UserCancelException.CANCEL_UNAPPLIED_CHANGES;
        }
    }
    boolean isChanged = true;
    Version v = documentWindowManager.getVCDocument().getVersion();
    if (v == null || !v.getOwner().equals(documentManager.getSessionManager().getUser())) {
        isChanged = true;
    } else {
        try {
            isChanged = documentManager.isChanged(documentWindowManager.getVCDocument());
        } catch (DataAccessException exc) {
            String choice = PopupGenerator.showWarningDialog(documentWindowManager, documentWindowManager.getUserPreferences(), UserMessage.warn_UnableToCheckForChanges, null);
            if (!choice.equals(UserMessage.OPTION_CONTINUE)) {
                throw UserCancelException.WARN_UNABLE_CHECK;
            }
        }
    }
    if (!isChanged) {
        if (whileSavingForRunningSims) {
            // just skip the saves and go ahead
            hashTable.put("conditionalSkip", new String[] { SaveDocument.class.getName(), CheckBeforeDelete.class.getName(), DeleteOldDocument.class.getName() });
        } else {
            String choice = PopupGenerator.showWarningDialog(documentWindowManager, documentWindowManager.getUserPreferences(), UserMessage.warn_UnchangedDocument, null);
            if (choice.equals(UserMessage.OPTION_SAVE_AS_NEW)) {
                // user chose to Save As
                throw UserCancelException.CHOOSE_SAVE_AS;
            } else {
                // user canceled, just show existing document
                throw UserCancelException.WARN_NO_CHANGES;
            }
        }
    }
}