Example 1 with UserNameNode
use of cbit.vcell.desktop.BioModelNode.UserNameNode in project vcell by virtualcell.
the class MathModelCellRenderer method getTreeCellRendererComponent.
/**
* Insert the method's description here.
* Creation date: (7/27/2000 6:41:57 PM)
* @return java.awt.Component
*/
public java.awt.Component getTreeCellRendererComponent(JTree tree, Object value, boolean sel, boolean expanded, boolean leaf, int row, boolean hasFocus) {
JLabel component = (JLabel) super.getTreeCellRendererComponent(tree, value, sel, expanded, leaf, row, hasFocus);
//
try {
if (value instanceof UserNameNode) {
UserNameNode node = (UserNameNode) value;
String label = (String) node.getUserObject();
String qualifier = "";
if (sessionUser != null && sessionUser.getName().contentEquals(label)) {
String colorString = (sel) ? "white" : "#8B0000";
qualifier = "<font color=\"" + colorString + "\"><b>" + label + "</b></font>";
} else {
String colorString = (sel) ? "white" : "black";
qualifier = "<font color=\"" + colorString + "\">" + label + "</font>";
}
component.setToolTipText(label);
component.setText("<html>" + qualifier + " (" + node.getChildCount() + ")" + "</html>");
component.setIcon(fieldFolderUserIcon);
} else if (value instanceof PublicationInfoNode) {
BioModelNode node = (PublicationInfoNode) value;
PublicationInfo pi = (PublicationInfo) node.getUserObject();
String label = pi.getTitle();
String name = "";
if (pi.getAuthors() != null && pi.getAuthors().length > 0) {
name = pi.getAuthors()[0];
}
if (name.contains(",")) {
name = name.substring(0, name.indexOf(","));
}
int year = Integer.parseInt((new SimpleDateFormat("yyyy")).format(pi.getPubDate()));
String label2 = name + " " + year + " " + label;
int maxLen = MaxPublicationLabelLength + (node.getChildCount() > 1 ? 0 : 4);
if (label2.length() > maxLen) {
label2 = label2.substring(0, maxLen) + "...";
}
if (node.getChildCount() > 1) {
String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
String suffix = sel ? "" : "</span>";
label += prefix + " (" + node.getChildCount() + ")" + suffix;
label2 += prefix + " (" + node.getChildCount() + ")" + suffix;
}
component.setText("<html>" + label2 + "</html>");
component.setToolTipText("<html>" + label + "</html>");
if (pi.getPubDate().compareTo(Calendar.getInstance().getTime()) > 0) {
// sanity check
setIcon(fieldFolderWarningIcon);
} else if (pi.getDoi() == null) {
setIcon(fieldFolderWarningIcon);
} else if (name.contains(" ")) {
setIcon(fieldFolderWarningIcon);
} else {
// publications have their own icon
setIcon(fieldPublishedPublicationIcon);
}
} else if (value instanceof BioModelNode) {
BioModelNode node = (BioModelNode) value;
Object userObject = node.getUserObject();
if (userObject instanceof User) {
String label = null;
if (sessionUser != null && sessionUser.compareEqual((User) userObject)) {
label = "My MathModels (" + ((User) userObject).getName() + ") (" + node.getChildCount() + ")";
} else {
label = ((User) userObject).getName() + " ";
}
component.setToolTipText(label);
component.setText(label);
} else if (userObject instanceof MathModelInfo) {
// a math model version
MathModelInfo mathModelInfo = (MathModelInfo) userObject;
if (mathModelInfo.getPublicationInfos() != null && mathModelInfo.getPublicationInfos().length > 0) {
if (mathModelInfo.getVersion().getFlag().compareEqual(org.vcell.util.document.VersionFlag.Published)) {
component.setText("(Published) " + component.getText());
} else {
component.setText("(Curated) " + component.getText());
}
} else if (mathModelInfo.getVersion().getFlag().compareEqual(org.vcell.util.document.VersionFlag.Archived)) {
component.setText("(Archived) " + component.getText());
}
String str = component.getToolTipText();
if (str != null && !str.isEmpty()) {
component.setToolTipText(str + " " + mathModelInfo.getVersion().getVersionKey());
}
// we change color of version if it's in the Other folder (Uncurated) and belongs to login user
Object pNode = node.getParent();
if (pNode instanceof BioModelNode) {
pNode = ((BioModelNode) pNode).getParent();
if (pNode instanceof BioModelNode && ((BioModelNode) pNode).getUserObject() instanceof String) {
str = (String) ((BioModelNode) pNode).getUserObject();
pNode = ((BioModelNode) pNode).getParent();
if (((BioModelNode) pNode).getUserObject() instanceof String && str.equalsIgnoreCase(sessionUser.getName())) {
str = (String) ((BioModelNode) pNode).getUserObject();
if (str.equals(VCDocumentDbTreeModel.Other_MathModels)) {
// GRAY
String prefix = sel ? "" : "<span style=\"color:#808080\">";
String suffix = sel ? "" : "</span>";
String str1 = prefix + component.getText() + suffix;
setText("<html>" + str1 + "</html>");
}
}
}
}
} else if (userObject instanceof VCDocumentInfoNode) {
VCDocumentInfoNode infonode = (VCDocumentInfoNode) userObject;
User nodeUser = infonode.getVCDocumentInfo().getVersion().getOwner();
String modelName = infonode.getVCDocumentInfo().getVersion().getName();
String username = nodeUser.getName();
if (username.equals(VCDocumentDbTreeModel.USER_tutorial)) // || username.equals(VCDocumentDbTreeModel.USER_Education)
{
if (node.getParent() instanceof BioModelNode && ((BioModelNode) node.getParent()).getUserObject() instanceof String) {
String pName = (String) ((BioModelNode) node.getParent()).getUserObject();
if (pName.equals(VCDocumentDbTreeModel.Curated_MathModels)) {
// we add the user name to Curated
setText("<html><b>" + nodeUser.getName() + " </b> : " + modelName + "</html>");
} else {
// keep it simple for Education and Tutorial
component.setText(modelName);
}
} else {
component.setText(modelName);
}
} else if (nodeUser.compareEqual(sessionUser)) {
Object pNode = node.getParent();
if (pNode instanceof BioModelNode) {
BioModelNode parent = (BioModelNode) pNode;
if (parent.getUserObject() instanceof String) {
// the Published, Curated and Other folders are the only
// ones where the parent user object is a String
String str = (String) parent.getUserObject();
if (str.equals(VCDocumentDbTreeModel.Published_MathModels) || str.equals(VCDocumentDbTreeModel.Curated_MathModels)) /*|| str.equals(VCDocumentDbTreeModel.Other_MathModels)*/
{
String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
String suffix = sel ? "" : "</span>";
setText("<html><b>" + prefix + nodeUser.getName() + suffix + "</b> : " + modelName + "</html>");
} else {
// in the Other folder / owner folder
// GRAY
String prefix = sel ? "" : "<span style=\"color:#808080\">";
String suffix = sel ? "" : "</span>";
String str1 = prefix + modelName + suffix;
if (node.getChildCount() > 1) {
prefix = sel ? "" : "<span style=\"color:#8B0000\">";
suffix = sel ? "" : "</span>";
str1 += prefix + " (" + node.getChildCount() + ")" + suffix;
}
// the name of the model container - which holds the versions
setText("<html>" + str1 + "</html>");
}
} else if (parent.getUserObject() instanceof PublicationInfo) {
String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
String suffix = sel ? "" : "</span>";
setText("<html><b>" + prefix + nodeUser.getName() + suffix + "</b> : " + modelName + "</html>");
} else {
String str = modelName;
if (node.getChildCount() > 1) {
String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
String suffix = sel ? "" : "</span>";
str += prefix + " (" + node.getChildCount() + ")" + suffix;
}
setText("<html>" + str + "</html>");
}
} else {
// unreachable
setText(modelName);
}
} else {
Object pNode = node.getParent();
if (pNode instanceof UserNameNode) {
// if we are inside an UserName folder (like Shared or Uncurated public),
// don't prefix again the model with the user name
String str = modelName;
if (node.getChildCount() > 1) {
String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
String suffix = sel ? "" : "</span>";
str += prefix + " (" + node.getChildCount() + ")" + suffix;
}
setText("<html>" + str + "</html>");
} else {
// content of "Published" folder
setText("<html><b>" + nodeUser.getName() + " </b> : " + modelName + "</html>");
}
}
}
}
} catch (Throwable e) {
e.printStackTrace(System.out);
}
//
if (component.getToolTipText() == null || component.getToolTipText().length() == 0) {
component.setToolTipText(component.getText());
}
return component;
}
Also used :
UserNameNode(cbit.vcell.desktop.BioModelNode.UserNameNode)
User(org.vcell.util.document.User)
PublicationInfo(org.vcell.util.document.PublicationInfo)
JLabel(javax.swing.JLabel)
MathModelInfo(org.vcell.util.document.MathModelInfo)
SimpleDateFormat(java.text.SimpleDateFormat)
PublicationInfoNode(cbit.vcell.desktop.BioModelNode.PublicationInfoNode)
Example 2 with UserNameNode
use of cbit.vcell.desktop.BioModelNode.UserNameNode in project vcell by virtualcell.
the class VCDocumentDbTreeModel method initFinalTree.
protected static synchronized void initFinalTree(VCDocumentDbTreeModel vcDocumentDbTreeModel, TreeMap<String, BioModelNode> treeMap, User loginUser) {
BioModelNode ownerNode = (BioModelNode) treeMap.get(loginUser.getName());
BioModelNode tempNode = new BioModelNode();
vcDocumentDbTreeModel.myModelsNode.setUserObject(loginUser);
vcDocumentDbTreeModel.myModelsNode.removeAllChildren();
for (int c = 0; c < ownerNode.getChildCount(); ) {
// c stays zero, during each iteration we keep extracting the first element
BioModelNode childNode = (BioModelNode) ownerNode.getChildAt(c);
// VCDocumentInfoNode vcdDocumentInfoNode = (VCDocumentInfoNode) childNode.getUserObject();
// System.out.println(vcdDocumentInfoNode.getVCDocumentInfo().getVersion().getName());
BioModelNode cloneNode = childNode.clone();
// this slowly empties ownerNode
vcDocumentDbTreeModel.myModelsNode.add(childNode);
boolean isPublic = false;
for (int i = 0; i < childNode.getChildCount(); i++) {
BioModelNode versionBioModelNode = (BioModelNode) childNode.getChildAt(i);
VCDocumentInfo versionVCDocumentInfo = (VCDocumentInfo) versionBioModelNode.getUserObject();
BigDecimal groupid = versionVCDocumentInfo.getVersion().getGroupAccess().getGroupid();
if (groupid.equals(GroupAccess.GROUPACCESS_ALL)) {
isPublic = true;
}
// use the form below if want to populate the Other folder with my Public models
// if (groupid.equals(GroupAccess.GROUPACCESS_ALL)) {
// use the form below to populate only the Published folder with my Published models
// if( versionVCDocumentInfo.getPublicationInfos() != null && versionVCDocumentInfo.getPublicationInfos().length > 0) {
// BioModelNode versionCloneNode = versionBioModelNode.clone();
// cloneNode.add(versionCloneNode);
// }
}
if (isPublic) {
BioModelNode publicClone = BioModelNode.deepClone(childNode);
// we add all login user models that have at least one public version
tempNode.add(publicClone);
}
// if(cloneNode.getChildCount() > 0) {
// tempNode.add(cloneNode); // we keep adding only the clones of the public versions (if any) to the cloneNode
// }
// ownerNode gets empty eventually
}
for (int c = 0; c < tempNode.getChildCount(); ) {
// we put back in ownerNode the clone nodes with public versions
BioModelNode childNode = (BioModelNode) tempNode.getChildAt(c);
ownerNode.add(childNode);
}
// key is publicationKey, value is the list of model nodes associated with the PublicationInfo object
LinkedHashMap<KeyValue, LinkedList<BioModelNode>> publishedModelsMap = new LinkedHashMap<>();
LinkedHashMap<KeyValue, LinkedList<BioModelNode>> curatedModelsMap = new LinkedHashMap<>();
// key is publicationKey, value is a PublicationInfo instance associated to the DOI
LinkedHashMap<KeyValue, PublicationInfo> publicationsMap = new LinkedHashMap<>();
vcDocumentDbTreeModel.sharedModelsNode.removeAllChildren();
boolean bTutorial = vcDocumentDbTreeModel.tutorialModelsNode != null;
// boolean bEducation = vcDocumentDbTreeModel.educationModelsNode != null;
boolean bModelBricks = vcDocumentDbTreeModel.modelBricksNode != null;
boolean bPublished = vcDocumentDbTreeModel.publishedModelsNode != null;
boolean bCurated = vcDocumentDbTreeModel.curatedModelsNode != null;
boolean bOther = vcDocumentDbTreeModel.otherModelsNode != null;
if (bTutorial) {
vcDocumentDbTreeModel.tutorialModelsNode.removeAllChildren();
}
// if(bEducation){vcDocumentDbTreeModel.educationModelsNode.removeAllChildren();}
if (bModelBricks) {
vcDocumentDbTreeModel.modelBricksNode.removeAllChildren();
}
if (bPublished) {
vcDocumentDbTreeModel.publishedModelsNode.removeAllChildren();
}
if (bCurated) {
vcDocumentDbTreeModel.curatedModelsNode.removeAllChildren();
}
if (bOther) {
vcDocumentDbTreeModel.otherModelsNode.removeAllChildren();
}
for (String username : treeMap.keySet()) {
// iterate through all users
// if(username.equals(USER_modelBricks)) {
// System.out.print(username);
// System.out.println();
// }
BioModelNode userNode = treeMap.get(username);
// initialize to something
BioModelNode parentNode = vcDocumentDbTreeModel.sharedModelsNode;
boolean bSpecificUser = true;
if ((username.equals(USER_tutorial) || username.equals(USER_tutorial610) || username.equals(USER_tutorial611)) && bTutorial) {
parentNode = vcDocumentDbTreeModel.tutorialModelsNode;
// } else if (username.equals(USER_Education) && bEducation) {
// parentNode = vcDocumentDbTreeModel.educationModelsNode;
} else if (username.equals(USER_modelBricks) && bModelBricks) {
parentNode = vcDocumentDbTreeModel.modelBricksNode;
} else {
bSpecificUser = false;
}
boolean added = false;
UserNameNode userNameNode = new UserNameNode(username, true);
for (int c = 0; c < userNode.getChildCount(); c++) {
// we just navigate through all of them, remove none
BioModelNode childNode = (BioModelNode) userNode.getChildAt(c);
// --------------------------------------------- 'other' public folder ---------------------------------------
if (!bSpecificUser) {
// if(username.equalsIgnoreCase(loginUser.getName())) {
// break; // TODO: we skip login user from now because it needs real time recalculation
// }
parentNode = vcDocumentDbTreeModel.otherModelsNode;
BioModelNode cloneNode = childNode.clone();
for (int i = 0; i < childNode.getChildCount(); i++) {
BioModelNode versionBioModelNode = (BioModelNode) childNode.getChildAt(i);
VCDocumentInfo versionVCDocumentInfo = (VCDocumentInfo) versionBioModelNode.getUserObject();
BigDecimal groupid = versionVCDocumentInfo.getVersion().getGroupAccess().getGroupid();
if (groupid.equals(GroupAccess.GROUPACCESS_ALL)) {
if (versionVCDocumentInfo.getPublicationInfos() != null && versionVCDocumentInfo.getPublicationInfos().length > 0) {
// we don't show in "Other" anything that is published or curated
continue;
}
// clone the public versions
BioModelNode versionCloneNode = versionBioModelNode.clone();
// and add them to the clone node
cloneNode.add(versionCloneNode);
}
}
if (cloneNode.getChildCount() > 0) {
// we keep adding only the clones of the public versions (if any) to the cloneNode
userNameNode.add(cloneNode);
if (added == false) {
parentNode.add(userNameNode);
added = true;
}
}
} else {
// anything belonging to users Education, Tutorial or modelBricks go to their own folders
if (username.equals(USER_modelBricks)) {
// revision feb 13, 2020 danv
// for modelBricks, only the public clones go the Model Bricks folder
// we'll enforce a single version policy so that we won't have to look into versions to see
// the individual flag of each
VCDocumentInfoNode vcdDocumentInfoNode = (VCDocumentInfoNode) childNode.getUserObject();
BigDecimal groupid = vcdDocumentInfoNode.getVCDocumentInfo().getVersion().getGroupAccess().getGroupid();
// BigDecimal groupid = versionVCDocumentInfo.getVersion().getGroupAccess().getGroupid();
if (groupid.equals(GroupAccess.GROUPACCESS_ALL)) {
// only the public bricks go here
BioModelNode clone = BioModelNode.deepClone(childNode);
parentNode.add(clone);
}
} else {
// for all the other special users we keep the old behavior
BioModelNode clone = BioModelNode.deepClone(childNode);
parentNode.add(clone);
}
}
}
// -------------------------------------------- shared folder -----------------------------------------------
added = false;
userNameNode = new UserNameNode(username, true);
for (int c = 0; c < userNode.getChildCount(); c++) {
// we just navigate through all of them, remove none
if (username.equalsIgnoreCase(loginUser.getName())) {
// the login user can't share with himself
break;
}
BioModelNode childNode = (BioModelNode) userNode.getChildAt(c);
if (!bSpecificUser) {
parentNode = vcDocumentDbTreeModel.sharedModelsNode;
BioModelNode cloneNode = childNode.clone();
for (int i = 0; i < childNode.getChildCount(); i++) {
BioModelNode versionBioModelNode = (BioModelNode) childNode.getChildAt(i);
VCDocumentInfo versionVCDocumentInfo = (VCDocumentInfo) versionBioModelNode.getUserObject();
BigDecimal groupid = versionVCDocumentInfo.getVersion().getGroupAccess().getGroupid();
// System.out.println(" " + groupid);
if (groupid.equals(GroupAccess.GROUPACCESS_ALL) || groupid.equals(GroupAccess.GROUPACCESS_NONE)) {
// we skip private and public versions (that includes published versions)
continue;
}
// clone the shared versions
BioModelNode versionCloneNode = versionBioModelNode.clone();
// and add them to the clone node
cloneNode.add(versionCloneNode);
}
if (cloneNode.getChildCount() > 0) {
// we keep adding only the clones of the shared versions (if any) to the cloneNode
userNameNode.add(cloneNode);
if (added == false) {
// now that we know for sure that the user name node is populated, we add it to the shared node if it's not there already
parentNode.add(userNameNode);
added = true;
}
}
} else {
if (username.equals(USER_modelBricks)) {
// revision feb 13, 2020 danv
// for modelBricks, we make a user name node and we populate it with all the bricks shared with
// the login user
// we'll enforce a single version policy so that we won't have to look into versions to see
// the individual flag of each
parentNode = vcDocumentDbTreeModel.sharedModelsNode;
VCDocumentInfoNode vcdDocumentInfoNode = (VCDocumentInfoNode) childNode.getUserObject();
BigDecimal groupid = vcdDocumentInfoNode.getVCDocumentInfo().getVersion().getGroupAccess().getGroupid();
if (groupid.equals(GroupAccess.GROUPACCESS_ALL) || groupid.equals(GroupAccess.GROUPACCESS_NONE)) {
// nothing to do here with public or private bricks
;
} else {
BioModelNode cloneNode = BioModelNode.deepClone(childNode);
userNameNode.add(cloneNode);
if (added == false) {
// now that we know for sure that the user name node is populated, we add it to the shared node if it's not there already
parentNode.add(userNameNode);
added = true;
}
}
}
}
}
for (int c = 0; c < userNode.getChildCount(); ) {
BioModelNode versionableNode = (BioModelNode) userNode.getChildAt(c);
// Search through versions of BM/MM to see if any are published
for (int i = 0; i < versionableNode.getChildCount(); ) {
// the versions
BioModelNode versionBioModelNode = (BioModelNode) versionableNode.getChildAt(i);
VCDocumentInfo versionVCDocumentInfo = (VCDocumentInfo) versionBioModelNode.getUserObject();
PublicationInfo[] piArray = versionVCDocumentInfo.getPublicationInfos();
if (piArray != null && piArray.length > 0) {
// we already placed this version in Curated, no need to look for more publications for curated
boolean foundCurated = false;
// same as above for published
boolean foundPublished = false;
for (PublicationInfo pi : piArray) {
KeyValue key = pi.getPublicationKey();
if (!publicationsMap.containsKey(key)) {
publicationsMap.put(key, pi);
}
if (versionVCDocumentInfo.getVersion().getFlag().compareEqual(org.vcell.util.document.VersionFlag.Published)) {
// published
if (foundPublished) {
continue;
}
// String vn = versionVCDocumentInfo.getVersion().getName();
// String vo = versionVCDocumentInfo.getVersion().getOwner().getName();
// String vk = versionVCDocumentInfo.getVersion().getVersionKey().toString();
// System.out.println(vk);
LinkedList<BioModelNode> modelsList;
if (publishedModelsMap.containsKey(key)) {
modelsList = publishedModelsMap.get(key);
} else {
modelsList = new LinkedList<>();
}
BioModelNode newPublishedNode = new BioModelNode(new VCDocumentInfoNode(versionVCDocumentInfo), true);
BioModelNode clonedNode = versionBioModelNode.clone();
newPublishedNode.add(clonedNode);
modelsList.add(newPublishedNode);
publishedModelsMap.put(key, modelsList);
foundPublished = true;
} else {
// curated
if (foundCurated) {
// otherwise we may add the same version multiple times to Curated, once for each PublicationInfo
continue;
}
// the code below shows by author + model name
BioModelNode newCuratedNode = new BioModelNode(new VCDocumentInfoNode(versionVCDocumentInfo), true);
BioModelNode clonedNode = versionBioModelNode.clone();
newCuratedNode.add(clonedNode);
vcDocumentDbTreeModel.curatedModelsNode.add(newCuratedNode);
// the code below shows by Publication Title
// LinkedList<BioModelNode> modelsList;
// if(curatedModelsMap.containsKey(key)) {
// modelsList = curatedModelsMap.get(key);
// } else {
// modelsList = new LinkedList<> ();
// }
// BioModelNode newCuratedNode = new BioModelNode(new VCDocumentInfoNode(versionVCDocumentInfo), true);
// BioModelNode clonedNode = versionBioModelNode.clone();
// newCuratedNode.add(clonedNode);
// modelsList.add(newCuratedNode);
// curatedModelsMap.put(key, modelsList);
foundCurated = true;
}
}
}
versionableNode.remove(i);
}
userNode.remove(c);
}
}
shallowOrderByPublication(publishedModelsMap, publicationsMap);
for (KeyValue key : publishedModelsMap.keySet()) {
LinkedList<BioModelNode> modelsList = publishedModelsMap.get(key);
PublicationInfo pi = publicationsMap.get(key);
BioModelNode newPublicationNode = new BioModelNode.PublicationInfoNode(pi, true);
for (BioModelNode node : modelsList) {
newPublicationNode.add(node);
}
vcDocumentDbTreeModel.publishedModelsNode.add(newPublicationNode);
}
// for (int c = 0; c < vcDocumentDbTreeModel.modelBricksNode.getChildCount(); c++) {
if (bModelBricks) {
for (int i = 0; i < vcDocumentDbTreeModel.modelBricksNode.getChildCount(); ) {
BioModelNode childNode = (BioModelNode) vcDocumentDbTreeModel.modelBricksNode.getChildAt(0);
vcDocumentDbTreeModel.curatedModelsNode.add(childNode);
}
}
}
Also used :
UserNameNode(cbit.vcell.desktop.BioModelNode.UserNameNode)
KeyValue(org.vcell.util.document.KeyValue)
PublicationInfo(org.vcell.util.document.PublicationInfo)
BigDecimal(java.math.BigDecimal)
LinkedList(java.util.LinkedList)
LinkedHashMap(java.util.LinkedHashMap)
VCDocumentInfo(org.vcell.util.document.VCDocumentInfo)
VCDocumentInfoNode(cbit.vcell.desktop.VCellBasicCellRenderer.VCDocumentInfoNode)
PublicationInfoNode(cbit.vcell.desktop.BioModelNode.PublicationInfoNode)
Example 3 with UserNameNode
use of cbit.vcell.desktop.BioModelNode.UserNameNode in project vcell by virtualcell.
the class GeometryCellRenderer method getTreeCellRendererComponent.
/**
* Insert the method's description here.
* Creation date: (7/27/2000 6:41:57 PM)
* @return java.awt.Component
*/
public java.awt.Component getTreeCellRendererComponent(JTree tree, Object value, boolean sel, boolean expanded, boolean leaf, int row, boolean hasFocus) {
JLabel component = (JLabel) super.getTreeCellRendererComponent(tree, value, sel, expanded, leaf, row, hasFocus);
//
try {
if (value instanceof UserNameNode) {
UserNameNode node = (UserNameNode) value;
String label = (String) node.getUserObject();
String qualifier = "";
if (sessionUser != null && sessionUser.getName().contentEquals(label)) {
String colorString = (sel) ? "white" : "#8B0000";
qualifier = "<font color=\"" + colorString + "\">" + label + "</font>";
} else {
String colorString = (sel) ? "white" : "black";
qualifier = "<font color=\"" + colorString + "\">" + label + "</font>";
}
component.setToolTipText(label);
component.setText("<html>" + qualifier + " (" + node.getChildCount() + ")" + "</html>");
component.setIcon(fieldFolderUserIcon);
} else if (value instanceof BioModelNode) {
BioModelNode node = (BioModelNode) value;
Object userObject = node.getUserObject();
if (userObject instanceof User) {
String label = null;
if (sessionUser != null && sessionUser.compareEqual((User) userObject)) {
label = "My Geometries (" + ((User) userObject).getName() + ") (" + node.getChildCount() + ")";
} else {
label = ((User) userObject).getName() + " ";
}
component.setToolTipText(label);
component.setText(label);
} else if (userObject instanceof VCDocumentInfoNode) {
VCDocumentInfoNode infonode = (VCDocumentInfoNode) userObject;
User nodeUser = infonode.getVCDocumentInfo().getVersion().getOwner();
String modelName = infonode.getVCDocumentInfo().getVersion().getName();
if (nodeUser.compareEqual(sessionUser)) {
// in My Geometries we don't display the name, it's always me
setText(modelName);
} else {
// for geometries we don't display the name (neither in Public, nor in Shared)
// use the code below if we actually need to display the user name too
// setText("<html><b>" + nodeUser.getName() + " </b> : " + modelName + "</html>");
setText(modelName);
}
}
}
} catch (Throwable e) {
e.printStackTrace(System.out);
}
//
if (component.getToolTipText() == null || component.getToolTipText().length() == 0) {
component.setToolTipText(component.getText());
}
return component;
}
Also used :
UserNameNode(cbit.vcell.desktop.BioModelNode.UserNameNode)
User(org.vcell.util.document.User)
JLabel(javax.swing.JLabel)
Example 4 with UserNameNode
use of cbit.vcell.desktop.BioModelNode.UserNameNode in project vcell by virtualcell.
the class BioModelCellRenderer method getTreeCellRendererComponent.
/**
* Insert the method's description here.
* Creation date: (7/27/2000 6:41:57 PM)
* @return java.awt.Component
*/
public java.awt.Component getTreeCellRendererComponent(JTree tree, Object value, boolean sel, boolean expanded, boolean leaf, int row, boolean hasFocus) {
JLabel component = (JLabel) super.getTreeCellRendererComponent(tree, value, sel, expanded, leaf, row, hasFocus);
//
try {
if (value instanceof DateNode) {
DateNode dateNode = (DateNode) value;
AnnotationQualifier qualifier = dateNode.getDateQualifier();
String colorString = (sel) ? "white" : "black";
component.setText("<html>" + qualifier.getDescription() + " <font color=\"" + colorString + "\">" + dateNode.getDate().getDateString() + "</font></html>");
} else if (value instanceof LinkNode) {
LinkNode ln = (LinkNode) value;
String link = ln.getLink();
String text = ln.getText();
MIRIAMQualifier mQualifier = ln.getMiriamQualifier();
String qualifier = "";
if (mQualifier.equals(MIRIAMQualifier.MODEL_isDescribedBy)) {
String colorString = (sel) ? "white" : "black";
qualifier = "<font color=\"" + colorString + "\">" + mQualifier.getDescription() + "</font>";
} else {
String colorString = (sel) ? "white" : "#8B0000";
qualifier = "<font color=\"" + colorString + "\">" + mQualifier.getDescription() + "</font>";
}
if (link != null) {
String colorString = (sel) ? "white" : "blue";
component.setToolTipText("Double-click to open link");
component.setText("<html>" + qualifier + " <font color=\"" + colorString + "\"><a href=" + link + ">" + text + "</a></font></html>");
} else {
String colorString = (sel) ? "white" : "black";
component.setText("<html>" + qualifier + " <font color=\"" + colorString + "\">" + text + "</font></html>");
}
} else if (value instanceof PublicationInfoNode) {
BioModelNode node = (PublicationInfoNode) value;
PublicationInfo pi = (PublicationInfo) node.getUserObject();
String label = pi.getTitle();
String name = "";
if (pi.getAuthors() != null && pi.getAuthors().length > 0) {
name = pi.getAuthors()[0];
}
if (name.contains(",")) {
name = name.substring(0, name.indexOf(","));
}
int year = Integer.parseInt((new SimpleDateFormat("yyyy")).format(pi.getPubDate()));
String label2 = name + " " + year + " " + label;
int maxLen = MaxPublicationLabelLength + (node.getChildCount() > 1 ? 0 : 4);
if (label2.length() > maxLen) {
label2 = label2.substring(0, maxLen) + "...";
}
if (node.getChildCount() > 1) {
String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
String suffix = sel ? "" : "</span>";
label += prefix + " (" + node.getChildCount() + ")" + suffix;
label2 += prefix + " (" + node.getChildCount() + ")" + suffix;
}
component.setText("<html>" + label2 + "</html>");
component.setToolTipText("<html>" + label + "</html>");
if (pi.getPubDate().compareTo(Calendar.getInstance().getTime()) > 0) {
// sanity check
setIcon(fieldFolderWarningIcon);
} else if (pi.getDoi() == null) {
setIcon(fieldFolderWarningIcon);
} else if (name.contains(" ")) {
setIcon(fieldFolderWarningIcon);
} else {
// publications have their own icon
setIcon(fieldPublishedPublicationIcon);
}
} else if (value instanceof UserNameNode) {
UserNameNode node = (UserNameNode) value;
String label = (String) node.getUserObject();
String qualifier = "";
if (sessionUser != null && sessionUser.getName().contentEquals(label)) {
String colorString = (sel) ? "white" : "#8B0000";
qualifier = "<font color=\"" + colorString + "\"><b>" + label + "</b></font>";
} else {
String colorString = (sel) ? "white" : "black";
qualifier = "<font color=\"" + colorString + "\">" + label + "</font>";
}
component.setToolTipText(label);
component.setText("<html>" + qualifier + " (" + node.getChildCount() + ")" + "</html>");
component.setIcon(fieldFolderUserIcon);
} else if (value instanceof BioModelNode) {
BioModelNode node = (BioModelNode) value;
Object userObject = node.getUserObject();
if (userObject instanceof User) {
String label = null;
if (sessionUser != null && sessionUser.compareEqual((User) userObject)) {
label = "My BioModels (" + ((User) userObject).getName() + ") (" + node.getChildCount() + ")";
} else {
label = ((User) userObject).getName() + "(abcdefghijklmnopq)(000000)";
}
component.setToolTipText(label);
component.setText(label);
} else if (userObject instanceof BioModelInfo) {
BioModelInfo biomodelInfo = (BioModelInfo) userObject;
if (biomodelInfo.getPublicationInfos() != null && biomodelInfo.getPublicationInfos().length > 0) {
if (biomodelInfo.getVersion().getFlag().compareEqual(org.vcell.util.document.VersionFlag.Published)) {
component.setText("(Published) " + component.getText());
} else {
component.setText("(Curated) " + component.getText());
}
} else if (biomodelInfo.getVersion().getFlag().compareEqual(org.vcell.util.document.VersionFlag.Archived)) {
component.setText("(Archived) " + component.getText());
}
String str = component.getToolTipText();
if (str != null && !str.isEmpty()) {
component.setToolTipText(str + " " + biomodelInfo.getVersion().getVersionKey());
}
// we change color of version if it's in the Other folder (Uncurated) and belongs to login user
Object pNode = node.getParent();
if (pNode instanceof BioModelNode) {
pNode = ((BioModelNode) pNode).getParent();
if (pNode instanceof BioModelNode && ((BioModelNode) pNode).getUserObject() instanceof String) {
str = (String) ((BioModelNode) pNode).getUserObject();
if (str.equals(VCDocumentDbTreeModel.ModelBricks) && sessionUser.getName().contentEquals(VCDocumentDbTreeModel.USER_modelBricks)) {
// GRAY
String prefix = sel ? "" : "<span style=\"color:#808080\">";
String suffix = sel ? "" : "</span>";
String str1 = prefix + component.getText() + suffix;
setText("<html>" + str1 + "</html>");
} else {
pNode = ((BioModelNode) pNode).getParent();
if (((BioModelNode) pNode).getUserObject() instanceof String && str.equalsIgnoreCase(sessionUser.getName())) {
str = (String) ((BioModelNode) pNode).getUserObject();
if (str.equals(VCDocumentDbTreeModel.Other_BioModels)) {
// GRAY
String prefix = sel ? "" : "<span style=\"color:#808080\">";
String suffix = sel ? "" : "</span>";
String str1 = prefix + component.getText() + suffix;
setText("<html>" + str1 + "</html>");
}
}
}
}
}
} else if (userObject instanceof Geometry) {
Geometry geo = (Geometry) userObject;
String label = "";
// geomety info, when spatial--shows name+1D/2D/3D
if (geo.getDimension() > 0) {
label = geo.getName() + " (" + geo.getDimension() + "D)";
} else {
label = BioModelChildSummary.COMPARTMENTAL_GEO_STR;
}
component.setToolTipText("Geometry");
component.setText(label);
setIcon(fieldGeometryIcon);
} else if (userObject instanceof String && "AppType".equals(node.getRenderHint("type"))) {
String label = (String) userObject;
component.setToolTipText("Application type");
component.setText(label);
setIcon(VCellIcons.mathTypeIcon);
} else if (userObject instanceof VCDocumentInfoNode) {
VCDocumentInfoNode infonode = (VCDocumentInfoNode) userObject;
User nodeUser = infonode.getVCDocumentInfo().getVersion().getOwner();
String modelName = infonode.getVCDocumentInfo().getVersion().getName();
String username = nodeUser.getName();
if (username.equals(VCDocumentDbTreeModel.USER_tutorial) || // || username.equals(VCDocumentDbTreeModel.USER_Education)
username.equals(VCDocumentDbTreeModel.USER_tutorial610) || username.equals(VCDocumentDbTreeModel.USER_tutorial611)) {
if (node.getParent() instanceof BioModelNode && ((BioModelNode) node.getParent()).getUserObject() instanceof String) {
String pName = (String) ((BioModelNode) node.getParent()).getUserObject();
if (pName.equals(VCDocumentDbTreeModel.Curated_BioModels)) {
// we add the user name to Curated
setText("<html><b>" + nodeUser.getName() + " </b> : " + modelName + "</html>");
} else {
// keep it simple for Education and Tutorial
component.setText(modelName);
}
} else {
component.setText(modelName);
}
} else if (username.equals(VCDocumentDbTreeModel.USER_modelBricks)) {
if (node.getParent() instanceof UserNameNode && sessionUser.getName().contentEquals(VCDocumentDbTreeModel.USER_modelBricks)) {
// login user is ModelBrick, must gray everything in the Other (Uncurated) folder
// ATTANTION: the Uncurated folder is populated with bricks only in the versions of vCell where the ModelBricks
// folder is missing !!!
String toolTip = modelName;
// GRAY
String prefix = sel ? "" : "<span style=\"color:#808080\">";
String suffix = sel ? "" : "</span>";
String str1 = prefix + modelName + suffix;
component.setText("<html>" + str1 + "</html>");
component.setToolTipText(toolTip);
} else if (node.getParent() instanceof BioModelNode && ((BioModelNode) node.getParent()).getUserObject() instanceof String && sessionUser.getName().contentEquals(VCDocumentDbTreeModel.USER_modelBricks) && ((String) ((BioModelNode) node.getParent()).getUserObject()).equals(VCDocumentDbTreeModel.ModelBricks)) {
// login user is ModelBrick, and the model Bricks folder is present -> we must gray everything in it
// do exactly what we did for the "Other" folder, just above
String toolTip = modelName;
// GRAY
String prefix = sel ? "" : "<span style=\"color:#808080\">";
String suffix = sel ? "" : "</span>";
String str1 = prefix + modelName + suffix;
component.setText("<html>" + str1 + "</html>");
component.setToolTipText(toolTip);
} else if (node.getParent() instanceof BioModelNode && ((BioModelNode) node.getParent()).getUserObject() instanceof String) {
String pName = (String) ((BioModelNode) node.getParent()).getUserObject();
String toolTip = modelName;
if (!sessionUser.getName().contentEquals(VCDocumentDbTreeModel.USER_modelBricks) && modelName.contains(VCDocumentDbTreeModel.ModelBricksNameSeparator)) {
modelName = modelName.substring(modelName.indexOf(VCDocumentDbTreeModel.ModelBricksNameSeparator) + VCDocumentDbTreeModel.ModelBricksNameSeparator.length());
String prefix = toolTip.substring(0, toolTip.indexOf(VCDocumentDbTreeModel.ModelBricksNameSeparator));
toolTip = "id: " + prefix + ", name: " + modelName;
}
if (pName.equals(VCDocumentDbTreeModel.Curated_BioModels)) {
// we add the user name to Curated
setText("<html><b>" + nodeUser.getName() + " </b> : " + modelName + "</html>");
component.setToolTipText(toolTip);
} else if (pName.equals(VCDocumentDbTreeModel.ModelBricks)) {
component.setText(modelName);
component.setToolTipText(toolTip);
} else {
String str = modelName;
if (node.getChildCount() > 1) {
String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
String suffix = sel ? "" : "</span>";
str += prefix + " (" + node.getChildCount() + ")" + suffix;
}
component.setText("<html>" + str + "</html>");
component.setToolTipText(toolTip);
}
} else {
component.setText(modelName);
}
} else if (nodeUser.compareEqual(sessionUser)) {
Object pNode = node.getParent();
if (pNode instanceof BioModelNode) {
BioModelNode parent = (BioModelNode) pNode;
// TODO: do this differently
if (parent.getUserObject() instanceof String) {
// the Published, Curated and Other folders are the only
// ones where the user object is a String
String str = (String) parent.getUserObject();
if (str.equals(VCDocumentDbTreeModel.Published_BioModels) || str.equals(VCDocumentDbTreeModel.Curated_BioModels)) /*|| str.equals(VCDocumentDbTreeModel.Other_BioModels)*/
{
String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
String suffix = sel ? "" : "</span>";
setText("<html><b>" + prefix + nodeUser.getName() + suffix + "</b> : " + modelName + "</html>");
} else {
// in the Other folder / owner folder
// GRAY
String prefix = sel ? "" : "<span style=\"color:#808080\">";
String suffix = sel ? "" : "</span>";
String str1 = prefix + modelName + suffix;
if (node.getChildCount() > 1) {
prefix = sel ? "" : "<span style=\"color:#8B0000\">";
suffix = sel ? "" : "</span>";
str1 += prefix + " (" + node.getChildCount() + ")" + suffix;
}
// the name of the model container - which holds the versions
setText("<html>" + str1 + "</html>");
}
} else if (parent.getUserObject() instanceof PublicationInfo) {
String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
String suffix = sel ? "" : "</span>";
setText("<html><b>" + prefix + nodeUser.getName() + suffix + "</b> : " + modelName + "</html>");
} else {
String str = modelName;
if (node.getChildCount() > 1) {
String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
String suffix = sel ? "" : "</span>";
str += prefix + " (" + node.getChildCount() + ")" + suffix;
}
setText("<html>" + str + "</html>");
}
} else {
// unreachable
setText(modelName);
}
} else {
Object pNode = node.getParent();
if (pNode instanceof UserNameNode) {
// if we are inside an UserName folder (like Shared or Uncurated public),
// don't prefix again the model with the user name
String str = modelName;
if (node.getChildCount() > 1) {
String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
String suffix = sel ? "" : "</span>";
str += prefix + " (" + node.getChildCount() + ")" + suffix;
}
setText("<html>" + str + "</html>");
} else {
// content of "Published" folder
setText("<html><b>" + nodeUser.getName() + " </b> : " + modelName + "</html>");
}
}
}
}
} catch (Throwable e) {
e.printStackTrace(System.out);
}
//
if (component.getToolTipText() == null || component.getToolTipText().length() == 0) {
component.setToolTipText(component.getText());
}
return component;
}
Also used :
UserNameNode(cbit.vcell.desktop.BioModelNode.UserNameNode)
DateNode(cbit.vcell.xml.gui.MiriamTreeModel.DateNode)
User(org.vcell.util.document.User)
PublicationInfo(org.vcell.util.document.PublicationInfo)
BioModelInfo(org.vcell.util.document.BioModelInfo)
JLabel(javax.swing.JLabel)
Geometry(cbit.vcell.geometry.Geometry)
AnnotationQualifier(org.vcell.sybil.models.AnnotationQualifier)
LinkNode(cbit.vcell.xml.gui.MiriamTreeModel.LinkNode)
MIRIAMQualifier(org.vcell.sybil.models.miriam.MIRIAMQualifier)
SimpleDateFormat(java.text.SimpleDateFormat)
PublicationInfoNode(cbit.vcell.desktop.BioModelNode.PublicationInfoNode)
Aggregations
UserNameNode (cbit.vcell.desktop.BioModelNode.UserNameNode)4
PublicationInfoNode (cbit.vcell.desktop.BioModelNode.PublicationInfoNode)3
JLabel (javax.swing.JLabel)3
PublicationInfo (org.vcell.util.document.PublicationInfo)3
User (org.vcell.util.document.User)3
SimpleDateFormat (java.text.SimpleDateFormat)2
VCDocumentInfoNode (cbit.vcell.desktop.VCellBasicCellRenderer.VCDocumentInfoNode)1
Geometry (cbit.vcell.geometry.Geometry)1
DateNode (cbit.vcell.xml.gui.MiriamTreeModel.DateNode)1
LinkNode (cbit.vcell.xml.gui.MiriamTreeModel.LinkNode)1
BigDecimal (java.math.BigDecimal)1
LinkedHashMap (java.util.LinkedHashMap)1
LinkedList (java.util.LinkedList)1
AnnotationQualifier (org.vcell.sybil.models.AnnotationQualifier)1
MIRIAMQualifier (org.vcell.sybil.models.miriam.MIRIAMQualifier)1
BioModelInfo (org.vcell.util.document.BioModelInfo)1
KeyValue (org.vcell.util.document.KeyValue)1
MathModelInfo (org.vcell.util.document.MathModelInfo)1
VCDocumentInfo (org.vcell.util.document.VCDocumentInfo)1
