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Example 1 with Agent

use of com.google.cloud.dialogflow.cx.v3beta1.Agent in project libSBOLj by SynBioDex.

the class Provenance_CodonOptimization method main.

public static void main(String[] args) throws Exception {
    NamespaceBinding myAppNs = NamespaceBinding("http://myapp.com/", "myapp");
    SBOLDocument document = new SBOLDocument();
    document.addNamespace(URI.create(myAppNs.getNamespaceURI()), myAppNs.getPrefix());
    document.setDefaultURIprefix(myAppNs.getNamespaceURI());
    ComponentDefinition optimizedCds = getCds(document, "codon_optimized", "Codon optimised CDS");
    ComponentDefinition sourceCds = getCds(document, "non_codon_optimized", "Non Codon optimised CDS");
    optimizedCds.addWasDerivedFrom(sourceCds.getIdentity());
    // Create the agent definition for the codon optimization software
    Agent agent = document.createAgent("codon_optimization_software");
    agent.setName("Codon Optimization Software");
    // Create the generic top level entity for the codon optimization activity
    Activity activity = document.createActivity("codon_optimization_activity");
    activity.setName("Codon Optimization Activity");
    // Create the qualifiedUsage annotation to describe the use of the non codon optimized CDS component
    activity.createUsage("usage", sourceCds.getIdentity()).addRole(URI.create("http://sbols.org/v2#source"));
    // Create the qualifiedAssociation annotation to describe the use of the software agent used in the activity
    activity.createAssociation("association", agent.getIdentity()).addRole(myAppNs.namespacedUri("codonoptimiser"));
    optimizedCds.addWasGeneratedBy(activity.getIdentity());
    SBOLWriter.write(document, System.out);
}
Also used : Agent(org.sbolstandard.core2.Agent) SBOLDocument(org.sbolstandard.core2.SBOLDocument) Activity(org.sbolstandard.core2.Activity) NamespaceBinding(org.sbolstandard.core.datatree.Datatree.NamespaceBinding) NamespaceBinding(org.sbolstandard.core.datatree.NamespaceBinding) ComponentDefinition(org.sbolstandard.core2.ComponentDefinition)

Example 2 with Agent

use of com.google.cloud.dialogflow.cx.v3beta1.Agent in project libSBOLj by SynBioDex.

the class Provenance_StrainDerivation method main.

public static void main(String[] args) throws Exception {
    NamespaceBinding myAppNs = NamespaceBinding("http://myapp.com/", "myapp");
    SBOLDocument document = new SBOLDocument();
    document.addNamespace(URI.create(myAppNs.getNamespaceURI()), myAppNs.getPrefix());
    document.setDefaultURIprefix(myAppNs.getNamespaceURI());
    ComponentDefinition b168 = getCds(document, "bsubtilis168", "Bacillus subtilis 168");
    ComponentDefinition b3610 = getCds(document, "bsubtilisncimb3610", "Bacillus subtilis NCIMB 3610");
    b168.addWasDerivedFrom(b3610.getIdentity());
    // Create the agent definition to represent X-ray
    Agent agent = document.createAgent("x_ray");
    agent.setName("X-ray");
    // Create the generic top level entity for the X-ray mutagenesis activity
    Activity activity = document.createActivity("xraymutagenesis");
    activity.setName("X-ray mutagenesis");
    // Create the qualifiedUsage annotation to describe the use of the parent strain
    activity.createUsage("usage", b3610.getIdentity()).addRole(URI.create("http://sbols.org/v2#source"));
    // Create the qualifiedAssociation annotation to describe the use of the agent used in the activity
    activity.createAssociation("association", agent.getIdentity()).addRole(myAppNs.namespacedUri("mutagen"));
    b168.addWasGeneratedBy(activity.getIdentity());
    SBOLWriter.write(document, System.out);
}
Also used : Agent(org.sbolstandard.core2.Agent) SBOLDocument(org.sbolstandard.core2.SBOLDocument) Activity(org.sbolstandard.core2.Activity) NamespaceBinding(org.sbolstandard.core.datatree.Datatree.NamespaceBinding) NamespaceBinding(org.sbolstandard.core.datatree.NamespaceBinding) ComponentDefinition(org.sbolstandard.core2.ComponentDefinition)

Example 3 with Agent

use of com.google.cloud.dialogflow.cx.v3beta1.Agent in project java-dialogflow-cx by googleapis.

the class DeploymentsClientTest method listDeploymentsTest.

@Test
public void listDeploymentsTest() throws Exception {
    Deployment responsesElement = Deployment.newBuilder().build();
    ListDeploymentsResponse expectedResponse = ListDeploymentsResponse.newBuilder().setNextPageToken("").addAllDeployments(Arrays.asList(responsesElement)).build();
    mockDeployments.addResponse(expectedResponse);
    EnvironmentName parent = EnvironmentName.of("[PROJECT]", "[LOCATION]", "[AGENT]", "[ENVIRONMENT]");
    ListDeploymentsPagedResponse pagedListResponse = client.listDeployments(parent);
    List<Deployment> resources = Lists.newArrayList(pagedListResponse.iterateAll());
    Assert.assertEquals(1, resources.size());
    Assert.assertEquals(expectedResponse.getDeploymentsList().get(0), resources.get(0));
    List<AbstractMessage> actualRequests = mockDeployments.getRequests();
    Assert.assertEquals(1, actualRequests.size());
    ListDeploymentsRequest actualRequest = ((ListDeploymentsRequest) actualRequests.get(0));
    Assert.assertEquals(parent.toString(), actualRequest.getParent());
    Assert.assertTrue(channelProvider.isHeaderSent(ApiClientHeaderProvider.getDefaultApiClientHeaderKey(), GaxGrpcProperties.getDefaultApiClientHeaderPattern()));
}
Also used : AbstractMessage(com.google.protobuf.AbstractMessage) ListDeploymentsPagedResponse(com.google.cloud.dialogflow.cx.v3beta1.DeploymentsClient.ListDeploymentsPagedResponse) Test(org.junit.Test)

Example 4 with Agent

use of com.google.cloud.dialogflow.cx.v3beta1.Agent in project java-dialogflow-cx by googleapis.

the class AgentsClientTest method listAgentsTest.

@Test
public void listAgentsTest() throws Exception {
    Agent responsesElement = Agent.newBuilder().build();
    ListAgentsResponse expectedResponse = ListAgentsResponse.newBuilder().setNextPageToken("").addAllAgents(Arrays.asList(responsesElement)).build();
    mockAgents.addResponse(expectedResponse);
    LocationName parent = LocationName.of("[PROJECT]", "[LOCATION]");
    ListAgentsPagedResponse pagedListResponse = client.listAgents(parent);
    List<Agent> resources = Lists.newArrayList(pagedListResponse.iterateAll());
    Assert.assertEquals(1, resources.size());
    Assert.assertEquals(expectedResponse.getAgentsList().get(0), resources.get(0));
    List<AbstractMessage> actualRequests = mockAgents.getRequests();
    Assert.assertEquals(1, actualRequests.size());
    ListAgentsRequest actualRequest = ((ListAgentsRequest) actualRequests.get(0));
    Assert.assertEquals(parent.toString(), actualRequest.getParent());
    Assert.assertTrue(channelProvider.isHeaderSent(ApiClientHeaderProvider.getDefaultApiClientHeaderKey(), GaxGrpcProperties.getDefaultApiClientHeaderPattern()));
}
Also used : AbstractMessage(com.google.protobuf.AbstractMessage) ListAgentsPagedResponse(com.google.cloud.dialogflow.cx.v3beta1.AgentsClient.ListAgentsPagedResponse) Test(org.junit.Test)

Example 5 with Agent

use of com.google.cloud.dialogflow.cx.v3beta1.Agent in project java-dialogflow-cx by googleapis.

the class AgentsClientTest method listAgentsTest2.

@Test
public void listAgentsTest2() throws Exception {
    Agent responsesElement = Agent.newBuilder().build();
    ListAgentsResponse expectedResponse = ListAgentsResponse.newBuilder().setNextPageToken("").addAllAgents(Arrays.asList(responsesElement)).build();
    mockAgents.addResponse(expectedResponse);
    String parent = "parent-995424086";
    ListAgentsPagedResponse pagedListResponse = client.listAgents(parent);
    List<Agent> resources = Lists.newArrayList(pagedListResponse.iterateAll());
    Assert.assertEquals(1, resources.size());
    Assert.assertEquals(expectedResponse.getAgentsList().get(0), resources.get(0));
    List<AbstractMessage> actualRequests = mockAgents.getRequests();
    Assert.assertEquals(1, actualRequests.size());
    ListAgentsRequest actualRequest = ((ListAgentsRequest) actualRequests.get(0));
    Assert.assertEquals(parent, actualRequest.getParent());
    Assert.assertTrue(channelProvider.isHeaderSent(ApiClientHeaderProvider.getDefaultApiClientHeaderKey(), GaxGrpcProperties.getDefaultApiClientHeaderPattern()));
}
Also used : AbstractMessage(com.google.protobuf.AbstractMessage) ListAgentsPagedResponse(com.google.cloud.dialogflow.cx.v3beta1.AgentsClient.ListAgentsPagedResponse) Test(org.junit.Test)

Aggregations

Test (org.junit.Test)23 AbstractMessage (com.google.protobuf.AbstractMessage)18 Agent (com.google.cloud.dialogflow.cx.v3.Agent)4 Builder (com.google.cloud.dialogflow.cx.v3.Agent.Builder)4 AgentsClient (com.google.cloud.dialogflow.cx.v3.AgentsClient)4 AgentsSettings (com.google.cloud.dialogflow.cx.v3.AgentsSettings)4 Agent (com.google.cloud.dialogflow.cx.v3beta1.Agent)4 Agent (com.google.cloud.dialogflow.v2.Agent)3 ArrayList (java.util.ArrayList)3 AgentName (com.google.cloud.dialogflow.cx.v3beta1.AgentName)2 ListAgentsPagedResponse (com.google.cloud.dialogflow.cx.v3beta1.AgentsClient.ListAgentsPagedResponse)2 Flow (com.google.cloud.dialogflow.cx.v3beta1.Flow)2 Intent (com.google.cloud.dialogflow.cx.v3beta1.Intent)2 Page (com.google.cloud.dialogflow.cx.v3beta1.Page)2 ByteArrayOutputStream (java.io.ByteArrayOutputStream)2 PrintStream (java.io.PrintStream)2 Agent (lcm2.Agent)2 Action (lcm2.simulation.Action)2 NamespaceBinding (org.sbolstandard.core.datatree.Datatree.NamespaceBinding)2 NamespaceBinding (org.sbolstandard.core.datatree.NamespaceBinding)2