Examples with Agent lcm2.Agent used on opensource projects

Example 1 with Agent

use of lcm2.Agent in project libSBOLj by SynBioDex.

the class Provenance_CodonOptimization method main.

public static void main(String[] args) throws Exception {
    NamespaceBinding myAppNs = NamespaceBinding("http://myapp.com/", "myapp");
    SBOLDocument document = new SBOLDocument();
    document.addNamespace(URI.create(myAppNs.getNamespaceURI()), myAppNs.getPrefix());
    document.setDefaultURIprefix(myAppNs.getNamespaceURI());
    ComponentDefinition optimizedCds = getCds(document, "codon_optimized", "Codon optimised CDS");
    ComponentDefinition sourceCds = getCds(document, "non_codon_optimized", "Non Codon optimised CDS");
    optimizedCds.addWasDerivedFrom(sourceCds.getIdentity());
    // Create the agent definition for the codon optimization software
    Agent agent = document.createAgent("codon_optimization_software");
    agent.setName("Codon Optimization Software");
    // Create the generic top level entity for the codon optimization activity
    Activity activity = document.createActivity("codon_optimization_activity");
    activity.setName("Codon Optimization Activity");
    // Create the qualifiedUsage annotation to describe the use of the non codon optimized CDS component
    activity.createUsage("usage", sourceCds.getIdentity()).addRole(URI.create("http://sbols.org/v2#source"));
    // Create the qualifiedAssociation annotation to describe the use of the software agent used in the activity
    activity.createAssociation("association", agent.getIdentity()).addRole(myAppNs.namespacedUri("codonoptimiser"));
    optimizedCds.addWasGeneratedBy(activity.getIdentity());
    SBOLWriter.write(document, System.out);
}

Example 2 with Agent

use of lcm2.Agent in project libSBOLj by SynBioDex.

the class Provenance_StrainDerivation method main.

public static void main(String[] args) throws Exception {
    NamespaceBinding myAppNs = NamespaceBinding("http://myapp.com/", "myapp");
    SBOLDocument document = new SBOLDocument();
    document.addNamespace(URI.create(myAppNs.getNamespaceURI()), myAppNs.getPrefix());
    document.setDefaultURIprefix(myAppNs.getNamespaceURI());
    ComponentDefinition b168 = getCds(document, "bsubtilis168", "Bacillus subtilis 168");
    ComponentDefinition b3610 = getCds(document, "bsubtilisncimb3610", "Bacillus subtilis NCIMB 3610");
    b168.addWasDerivedFrom(b3610.getIdentity());
    // Create the agent definition to represent X-ray
    Agent agent = document.createAgent("x_ray");
    agent.setName("X-ray");
    // Create the generic top level entity for the X-ray mutagenesis activity
    Activity activity = document.createActivity("xraymutagenesis");
    activity.setName("X-ray mutagenesis");
    // Create the qualifiedUsage annotation to describe the use of the parent strain
    activity.createUsage("usage", b3610.getIdentity()).addRole(URI.create("http://sbols.org/v2#source"));
    // Create the qualifiedAssociation annotation to describe the use of the agent used in the activity
    activity.createAssociation("association", agent.getIdentity()).addRole(myAppNs.namespacedUri("mutagen"));
    b168.addWasGeneratedBy(activity.getIdentity());
    SBOLWriter.write(document, System.out);
}

Example 3 with Agent

use of lcm2.Agent in project java-dialogflow-cx by googleapis.

the class ITSystemTest method listAgentsTest.

@Test
public void listAgentsTest() {
    ListAgentsRequest request = ListAgentsRequest.newBuilder().setParent(PARENT.toString()).build();
    Iterable<Agent> agents = agentsClient.listAgents(request).iterateAll();
    boolean isAgentExists = false;
    for (Agent agent : agents) {
        if (agentName.equals(agent.getName())) {
            assertAgentDetails(agent);
            isAgentExists = true;
        }
    }
    assertTrue(isAgentExists);
}

Example 4 with Agent

use of lcm2.Agent in project java-dialogflow-cx by googleapis.

the class ExportAgentIT method setUp.

@Before
public void setUp() throws IOException {
    stdOut = new ByteArrayOutputStream();
    System.setOut(new PrintStream(stdOut));
    Builder build = Agent.newBuilder();
    build.setDefaultLanguageCode("en");
    build.setDisplayName("temp_agent_" + UUID.randomUUID().toString());
    build.setTimeZone("America/Los_Angeles");
    Agent agent = build.build();
    String apiEndpoint = "global-dialogflow.googleapis.com:443";
    String parentPath = "projects/" + PROJECT_ID + "/locations/global";
    AgentsSettings agentsSettings = AgentsSettings.newBuilder().setEndpoint(apiEndpoint).build();
    AgentsClient client = AgentsClient.create(agentsSettings);
    parent = client.createAgent(parentPath, agent).getName();
    ExportAgentIT.agentPath = parent;
    ExportAgentIT.agentID = parent.split("/")[5];
    client.close();
}

Example 5 with Agent

use of lcm2.Agent in project java-dialogflow-cx by googleapis.

the class PageManagementIT method setUp.

@BeforeClass
public static void setUp() throws IOException {
    stdOut = new ByteArrayOutputStream();
    System.setOut(new PrintStream(stdOut));
    Builder build = Agent.newBuilder();
    build.setDefaultLanguageCode("en");
    build.setDisplayName("temp_agent_" + UUID.randomUUID().toString());
    build.setTimeZone("America/Los_Angeles");
    Agent agent = build.build();
    String apiEndpoint = "global-dialogflow.googleapis.com:443";
    String parentPath = "projects/" + PROJECT_ID + "/locations/global";
    AgentsSettings agentsSettings = AgentsSettings.newBuilder().setEndpoint(apiEndpoint).build();
    AgentsClient client = AgentsClient.create(agentsSettings);
    parent = client.createAgent(parentPath, agent).getName();
    agentID = parent.split("/")[5];
}