Examples with Location com.ibm.watson.compare_comply.v1.model.Location used on opensource projects

Example 61 with Location

use of com.ibm.watson.compare_comply.v1.model.Location in project geoprism-registry by terraframe.

the class FhirBulkDataImporter method synchronize.

public void synchronize() {
    PoolingHttpClientConnectionManager connectionManager = new PoolingHttpClientConnectionManager(5000, TimeUnit.MILLISECONDS);
    HttpClientBuilder builder = HttpClientBuilder.create();
    builder.setConnectionManager(connectionManager);
    CloseableHttpClient myClient = builder.build();
    FhirContext ctx = FhirContext.forR4();
    String statusUrl = initiateBulkExport(myClient, ctx);
    if (statusUrl != null) {
        final List<String> outputs = getExportResults(myClient, statusUrl);
        IGenericClient client = ctx.newRestfulGenericClient(this.system.getUrl());
        for (String binaryUrl : outputs) {
            Binary binary = client.fetchResourceFromUrl(Binary.class, binaryUrl);
            String base64 = binary.getContentAsBase64();
            byte[] result = Base64.getDecoder().decode(base64);
            IParser parser = ctx.newJsonParser();
            String message = new String(result);
            try (BufferedReader reader = new BufferedReader(new StringReader(message))) {
                String line = null;
                while ((line = reader.readLine()) != null) {
                    IBaseResource resource = parser.parseResource(line);
                    IIdType id = resource.getIdElement();
                    String resourceType = id.getResourceType();
                    if (resourceType.equals(ResourceTypes.LOCATION.toCode())) {
                        Location location = (Location) resource;
                        this.processor.process(location);
                    } else if (resourceType.equals(ResourceTypes.ORGANIZATION.toCode())) {
                        Organization organization = (Organization) resource;
                        this.processor.process(organization);
                    }
                }
            } catch (IOException e) {
                throw new ProgrammingErrorException(e);
            }
        }
    }
}

Example 62 with Location

use of com.ibm.watson.compare_comply.v1.model.Location in project geoprism-registry by terraframe.

the class FhirResourceImporter method process.

private void process(Bundle bundle) {
    FhirPathR4 path = new FhirPathR4(FhirContext.forR4());
    List<Location> locations = path.evaluate(bundle, "Bundle.entry.resource.ofType(Location)", Location.class);
    for (Location location : locations) {
        try {
            handleLocation(location);
            if (this.history != null) {
                this.history.appLock();
                this.history.setWorkProgress(count++);
                this.history.setExportedRecords(exportCount++);
                this.history.apply();
            }
        } catch (Exception e) {
            if (this.history != null) {
                this.recordExportError(e, this.history, location);
                this.history.appLock();
                this.history.setWorkProgress(count++);
                this.history.apply();
            } else {
                throw new ProgrammingErrorException(e);
            }
        }
    }
    List<Organization> organizations = path.evaluate(bundle, "Bundle.entry.resource.ofType(Organization)", Organization.class);
    for (Organization organization : organizations) {
        try {
            handleOrganization(organization);
            if (this.history != null) {
                this.history.appLock();
                this.history.setWorkProgress(count++);
                this.history.setExportedRecords(exportCount++);
                this.history.apply();
            }
        } catch (Exception e) {
            if (this.history != null) {
                this.recordExportError(e, this.history, organization);
                this.history.appLock();
                this.history.setWorkProgress(count++);
                this.history.apply();
            } else {
                throw new ProgrammingErrorException(e);
            }
        }
    }
}

Example 63 with Location

use of com.ibm.watson.compare_comply.v1.model.Location in project geoprism-registry by terraframe.

the class MCSDFhirDataPopulator method populate.

@Override
public void populate(Business row, Facility facility) {
    super.populate(row, facility);
    ServerGeoObjectType type = this.getList().getGeoObjectType();
    String label = type.getLabel().getValue();
    String system = this.getContext().getSystem();
    CodeableConcept concept = new CodeableConcept().setText(label).addCoding(new Coding(system, type.getCode(), label));
    Location location = facility.getLocation();
    location.addType(concept);
    location.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.Location");
    Organization organization = facility.getOrganization();
    organization.addType(concept);
    organization.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.Organization");
    if (type.getGeometryType().equals(GeometryType.MULTIPOINT)) {
        location.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.FacilityLocation");
        location.addType(new CodeableConcept().addCoding(new Coding("urn:ietf:rfc:3986", "urn:ihe:iti:mcsd:2019:facility", "Facility")));
        location.setPhysicalType(new CodeableConcept().setText("Building").addCoding(new Coding("http://terminology.hl7.org/CodeSystem/location-physical-type", "bu", "Building")));
        organization.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.FacilityOrganization");
        organization.addType(new CodeableConcept().addCoding(new Coding("urn:ietf:rfc:3986", "urn:ihe:iti:mcsd:2019:facility", "Facility")));
    } else {
        location.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.JurisdictionLocation");
        location.addType(new CodeableConcept().addCoding(new Coding("urn:ietf:rfc:3986", "urn:ihe:iti:mcsd:2019:jurisdiction", "Jurisdiction")));
        location.setPhysicalType(new CodeableConcept().setText("Jurisdiction").addCoding(new Coding("http://terminology.hl7.org/CodeSystem/location-physical-type", "jdn", "Jurisdiction")));
        organization.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.JurisdictionsOrganization");
        organization.addType(new CodeableConcept().addCoding(new Coding("urn:ietf:rfc:3986", "urn:ihe:iti:mcsd:2019:jurisdiction", "Jurisdiction")));
    }
    if (this.hierarchies.size() > 1) {
        for (ServerHierarchyType hierarchy : this.hierarchies) {
            this.addHierarchyExtension(row, facility, hierarchy);
        }
    } else if (this.hierarchies.size() == 1) {
        this.setPartOf(row, facility, this.hierarchies.get(0));
    }
}

Example 64 with Location

use of com.ibm.watson.compare_comply.v1.model.Location in project geoprism-registry by terraframe.

the class TolkienFhirDataPopulator method populate.

@Override
public void populate(Business row, Facility facility) {
    super.populate(row, facility);
    ServerGeoObjectType type = this.getList().getGeoObjectType();
    String label = type.getLabel().getValue();
    String system = this.getContext().getSystem();
    CodeableConcept concept = new CodeableConcept().setText(label).addCoding(new Coding(system, type.getCode(), label));
    Location location = facility.getLocation();
    location.addType(concept);
    location.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.Location");
    Organization organization = facility.getOrganization();
    organization.addType(concept);
    organization.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.Organization");
    if (type.getGeometryType().equals(GeometryType.MULTIPOINT)) {
        location.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.FacilityLocation");
        location.addType(new CodeableConcept().addCoding(new Coding("urn:ietf:rfc:3986", "urn:ihe:iti:mcsd:2019:facility", "Facility")));
        location.setPhysicalType(new CodeableConcept().setText("Building").addCoding(new Coding("http://terminology.hl7.org/CodeSystem/location-physical-type", "bu", "Building")));
        organization.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.FacilityOrganization");
        organization.addType(new CodeableConcept().addCoding(new Coding("urn:ietf:rfc:3986", "urn:ihe:iti:mcsd:2019:facility", "Facility")));
    } else {
        location.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.JurisdictionLocation");
        location.addType(new CodeableConcept().addCoding(new Coding("urn:ietf:rfc:3986", "urn:ihe:iti:mcsd:2019:jurisdiction", "Jurisdiction")));
        location.setPhysicalType(new CodeableConcept().setText("Jurisdiction").addCoding(new Coding("http://terminology.hl7.org/CodeSystem/location-physical-type", "jdn", "Jurisdiction")));
        organization.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE.mCSD.JurisdictionsOrganization");
        organization.addType(new CodeableConcept().addCoding(new Coding("urn:ietf:rfc:3986", "urn:ihe:iti:mcsd:2019:jurisdiction", "Jurisdiction")));
    }
    // if (this.hierarchies.size() > 1)
    {
        for (ServerHierarchyType hierarchy : this.hierarchies) {
            this.addHierarchyExtension(row, facility, hierarchy);
        }
    }
// else if (this.hierarchies.size() == 1)
// {
// this.setPartOf(row, facility, this.hierarchies.get(0));
// }
}

Example 65 with Location

use of com.ibm.watson.compare_comply.v1.model.Location in project eCRNow by drajer-health.

the class CdaFhirUtilities method getLocation.

public static Location getLocation(List<BundleEntryComponent> entries, Encounter en) {
    EncounterLocationComponent loc = en.getLocationFirstRep();
    if (loc != null && loc.getLocation() != null) {
        BundleEntryComponent ent = getResourceEntryForId(loc.getLocation().getReference(), "Location", entries);
        if (ent != null) {
            logger.debug("Found Location for Id {}", loc.getLocation().getReference());
            return (Location) ent.getResource();
        }
    }
    logger.debug("Did not find the location resource for encounter");
    return null;
}