Examples with SormasToSormasSampleDto de.symeda.sormas.api.sormastosormas.sample.SormasToSormasSampleDto used on opensource projects

Example 1 with SormasToSormasSampleDto

use of de.symeda.sormas.api.sormastosormas.sample.SormasToSormasSampleDto in project SORMAS-Project by hzi-braunschweig.

the class SormasToSormasSampleDtoValidator method validate.

@Override
public ValidationErrors validate(SormasToSormasSampleDto sharedData, ValidationDirection direction) {
    SampleDto sample = sharedData.getEntity();
    ValidationErrors validationErrors = new ValidationErrors(buildSampleValidationGroupName(sample));
    // todo shouldn't this be FacilityType.LABORATORY?
    infraValidator.validateFacility(sample.getLab(), null, sample.getLabDetails(), Captions.Sample_lab, validationErrors, f -> {
        sample.setLab(f.getEntity());
        sample.setLabDetails(f.getDetails());
    });
    sharedData.getPathogenTests().forEach(pathogenTest -> validatePathogenTest(validationErrors, pathogenTest));
    return validationErrors;
}

Example 2 with SormasToSormasSampleDto

use of de.symeda.sormas.api.sormastosormas.sample.SormasToSormasSampleDto in project SORMAS-Project by hzi-braunschweig.

the class SormasToSormasContactFacadeEjbTest method testSaveReturnedContact.

@Test
public void testSaveReturnedContact() throws SormasToSormasException, SormasToSormasValidationException {
    UserReferenceDto officer = creator.createUser(rdcf, UserRole.SURVEILLANCE_OFFICER).toReference();
    PersonDto contactPerson = creator.createPerson();
    ContactDto contact = creator.createContact(rdcf, officer, contactPerson.toReference());
    SampleDto sharedSample = creator.createSample(contact.toReference(), officer, rdcf.facility, null);
    SampleDto newSample = createRemoteSample(contact.toReference(), officer, rdcf.facility);
    User officerUser = getUserService().getByReferenceDto(officer);
    getShareRequestInfoService().persist(createShareRequestInfo(officerUser, DEFAULT_SERVER_ID, true, i -> i.setContact(getContactService().getByReferenceDto(contact.toReference()))));
    getShareRequestInfoService().persist(createShareRequestInfo(officerUser, DEFAULT_SERVER_ID, true, i -> i.setSample(getSampleService().getByReferenceDto(sharedSample.toReference()))));
    contact.setQuarantine(QuarantineType.HOTEL);
    Calendar calendar = Calendar.getInstance();
    calendar.setTime(contact.getChangeDate());
    calendar.add(Calendar.DAY_OF_MONTH, 1);
    contact.setChangeDate(calendar.getTime());
    SormasToSormasDto shareData = new SormasToSormasDto();
    shareData.setOriginInfo(createSormasToSormasOriginInfo(DEFAULT_SERVER_ID, true));
    shareData.setContacts(Collections.singletonList(new SormasToSormasContactDto(contactPerson, contact)));
    shareData.setSamples(Arrays.asList(new SormasToSormasSampleDto(sharedSample, Collections.emptyList(), Collections.emptyList()), new SormasToSormasSampleDto(newSample, Collections.emptyList(), Collections.emptyList())));
    SormasToSormasEncryptedDataDto encryptedData = encryptShareData(shareData);
    getSormasToSormasContactFacade().saveSharedEntities(encryptedData);
    ContactDto returnedContact = getContactFacade().getByUuid(contact.getUuid());
    assertThat(returnedContact.getQuarantine(), is(QuarantineType.HOTEL));
    assertThat(returnedContact.getReportingUser(), is(officer));
    List<SormasToSormasShareInfoDto> contactShares = getSormasToSormasShareInfoFacade().getIndexList(new SormasToSormasShareInfoCriteria().contact(contact.toReference()), 0, 100);
    assertThat(contactShares.get(0).isOwnershipHandedOver(), is(false));
    List<SormasToSormasShareInfoDto> sampleShares = getSormasToSormasShareInfoFacade().getIndexList(new SormasToSormasShareInfoCriteria().sample(sharedSample.toReference()), 0, 100);
    assertThat(sampleShares.get(0).isOwnershipHandedOver(), is(false));
    SampleDto returnedNewSample = getSampleFacade().getSampleByUuid(newSample.getUuid());
    assertThat(returnedNewSample.getSormasToSormasOriginInfo().isOwnershipHandedOver(), is(true));
}

Example 3 with SormasToSormasSampleDto

use of de.symeda.sormas.api.sormastosormas.sample.SormasToSormasSampleDto in project SORMAS-Project by hzi-braunschweig.

the class SormasToSormasEventFacadeEjbTest method testSaveSharedEventsWithSamples.

@Test
public void testSaveSharedEventsWithSamples() throws SormasToSormasException, SormasToSormasValidationException {
    FacilityDto remoteLab = FacilityDto.build();
    remoteLab.setName("Test Lab");
    FacilityDto localLab = creator.createFacility("Test Lab", rdcf.region, rdcf.district, null, FacilityType.LABORATORY);
    EventDto event = createEventDto(rdcf);
    UserDto sampleUser = UserDto.build();
    EventParticipantDto eventParticipant = createEventParticipantDto(event.toReference(), sampleUser.toReference(), rdcf);
    SampleDto sample = createSample(eventParticipant.toReference(), sampleUser.toReference(), remoteLab.toReference());
    sample.setLabSampleID("Test lab sample id");
    PathogenTestDto pathogenTest = PathogenTestDto.build(sample, sampleUser);
    pathogenTest.setTestDateTime(new Date());
    pathogenTest.setLab(remoteLab.toReference());
    pathogenTest.setTestType(PathogenTestType.RAPID_TEST);
    pathogenTest.setTestResult(PathogenTestResultType.PENDING);
    AdditionalTestDto additionalTest = AdditionalTestDto.build(sample.toReference());
    additionalTest.setTestDateTime(new Date());
    additionalTest.setHaemoglobin(0.2F);
    additionalTest.setConjBilirubin(0.3F);
    SormasToSormasDto shareData = new SormasToSormasDto();
    shareData.setOriginInfo(createSormasToSormasOriginInfo(DEFAULT_SERVER_ID, false));
    shareData.setEvents(Collections.singletonList(new SormasToSormasEventDto(event)));
    shareData.setEventParticipants(Collections.singletonList(new SormasToSormasEventParticipantDto(eventParticipant)));
    shareData.setSamples(Collections.singletonList(new SormasToSormasSampleDto(sample, Collections.singletonList(pathogenTest), Collections.singletonList(additionalTest))));
    SormasToSormasEncryptedDataDto encryptedData = encryptShareData(shareData);
    getSormasToSormasEventFacade().saveSharedEntities(encryptedData);
    SampleDto savedSample = getSampleFacade().getSampleByUuid(sample.getUuid());
    assertThat(savedSample, is(notNullValue()));
    assertThat(savedSample.getAssociatedEventParticipant(), is(eventParticipant.toReference()));
    assertThat(savedSample.getSampleMaterial(), is(SampleMaterial.BLOOD));
    assertThat(savedSample.getLab(), is(localLab.toReference()));
    assertThat(savedSample.getLabSampleID(), is("Test lab sample id"));
    assertThat(savedSample.getSormasToSormasOriginInfo().getOrganizationId(), is(DEFAULT_SERVER_ID));
    assertThat(savedSample.getSormasToSormasOriginInfo().getSenderName(), is("John doe"));
    PathogenTestDto savedPathogenTest = getPathogenTestFacade().getByUuid(pathogenTest.getUuid());
    assertThat(savedPathogenTest, is(notNullValue()));
    assertThat(savedPathogenTest.getLab(), is(localLab.toReference()));
    assertThat(savedPathogenTest.getTestType(), is(PathogenTestType.RAPID_TEST));
    assertThat(savedPathogenTest.getTestResult(), is(PathogenTestResultType.PENDING));
    AdditionalTestDto savedAdditionalTest = getAdditionalTestFacade().getByUuid(additionalTest.getUuid());
    assertThat(savedAdditionalTest, is(notNullValue()));
    assertThat(savedAdditionalTest.getHaemoglobin(), is(0.2F));
    assertThat(savedAdditionalTest.getConjBilirubin(), is(0.3F));
}

Example 4 with SormasToSormasSampleDto

use of de.symeda.sormas.api.sormastosormas.sample.SormasToSormasSampleDto in project SORMAS-Project by hzi-braunschweig.

the class SormasToSormasEventFacadeEjbTest method testShareEventWithSamples.

@Test
public void testShareEventWithSamples() throws SormasToSormasException {
    UserDto user = creator.createUser(rdcf, UserRole.NATIONAL_USER);
    useSurveillanceOfficerLogin(rdcf);
    EventDto event = creator.createEvent(EventStatus.SCREENING, EventInvestigationStatus.ONGOING, "Test event title", "Test description", user.toReference(), (e) -> {
        e.getEventLocation().setRegion(rdcf.region);
        e.getEventLocation().setDistrict(rdcf.district);
    });
    EventParticipantDto eventParticipant = creator.createEventParticipant(event.toReference(), creator.createPerson("John", "Doe", p -> p.setBirthName("Test birth name")), "Involved", user.toReference(), (ep) -> {
        ep.setRegion(rdcf.region);
        ep.setDistrict(rdcf.district);
        ep.setVaccinationStatus(VaccinationStatus.VACCINATED);
    }, null);
    SampleDto sample = creator.createSample(eventParticipant.toReference(), new Date(), new Date(), user.toReference(), SampleMaterial.BLOOD, rdcf.facility);
    creator.createPathogenTest(sample.toReference(), PathogenTestType.CULTURE, Disease.CORONAVIRUS, new Date(), rdcf.facility, user.toReference(), PathogenTestResultType.INDETERMINATE, "Test result", true, null);
    creator.createAdditionalTest(sample.toReference());
    SormasToSormasOptionsDto options = new SormasToSormasOptionsDto();
    options.setOrganization(new SormasServerDescriptor(SECOND_SERVER_ID));
    options.setWithEventParticipants(true);
    options.setWithSamples(true);
    options.setComment("Test comment");
    Mockito.when(MockProducer.getSormasToSormasClient().post(ArgumentMatchers.anyString(), ArgumentMatchers.anyString(), ArgumentMatchers.any(), ArgumentMatchers.any())).thenAnswer(invocation -> {
        assertThat(invocation.getArgument(0, String.class), is(SECOND_SERVER_ID));
        assertThat(invocation.getArgument(1, String.class), is("/sormasToSormas/events"));
        SormasToSormasDto postBody = invocation.getArgument(2, SormasToSormasDto.class);
        assertThat(postBody.getEvents().size(), is(1));
        List<SormasToSormasEventParticipantDto> eventParticipants = postBody.getEventParticipants();
        assertThat(eventParticipants, hasSize(1));
        List<SormasToSormasSampleDto> samples = postBody.getSamples();
        assertThat(samples, hasSize(1));
        assertThat(samples.get(0).getPathogenTests(), hasSize(1));
        assertThat(samples.get(0).getAdditionalTests(), hasSize(1));
        return Response.noContent().build();
    });
    getSormasToSormasEventFacade().share(Collections.singletonList(event.getUuid()), options);
    List<SormasToSormasShareInfoDto> shareInfoList = getSormasToSormasShareInfoFacade().getIndexList(new SormasToSormasShareInfoCriteria().event(event.toReference()), 0, 100);
    assertThat(shareInfoList.size(), is(1));
    assertThat(shareInfoList.get(0).getTargetDescriptor().getId(), is(SECOND_SERVER_ID));
    assertThat(shareInfoList.get(0).getSender().getCaption(), is("Surv OFF - Surveillance Officer"));
    assertThat(shareInfoList.get(0).getComment(), is("Test comment"));
}

Example 5 with SormasToSormasSampleDto

use of de.symeda.sormas.api.sormastosormas.sample.SormasToSormasSampleDto in project SORMAS-Project by hzi-braunschweig.

the class SormasToSormasEventFacadeEjbTest method testSaveReturnedEvent.

@Test
public void testSaveReturnedEvent() throws SormasToSormasException, SormasToSormasValidationException {
    UserReferenceDto officer = creator.createUser(rdcf, UserRole.SURVEILLANCE_OFFICER).toReference();
    EventDto event = creator.createEvent(officer);
    EventParticipantDto eventParticipant = creator.createEventParticipant(event.toReference(), creator.createPerson(), officer);
    EventParticipantDto newEventParticipant = createEventParticipantDto(event.toReference(), UserDto.build().toReference(), rdcf);
    FacilityDto lab = creator.createFacility("Test Lab", rdcf.region, rdcf.district, null, FacilityType.LABORATORY);
    SampleDto newSample = createSample(newEventParticipant.toReference(), officer, lab.toReference());
    User officerUser = getUserService().getByReferenceDto(officer);
    ShareRequestInfo shareRequestInfo = createShareRequestInfo(officerUser, DEFAULT_SERVER_ID, true, i -> i.setEvent(getEventService().getByReferenceDto(event.toReference())));
    shareRequestInfo.setWithEventParticipants(true);
    shareRequestInfo.getShares().add(createShareInfo(DEFAULT_SERVER_ID, true, i -> i.setEventParticipant(getEventParticipantService().getByReferenceDto(eventParticipant.toReference()))));
    getShareRequestInfoService().persist(shareRequestInfo);
    event.setEventDesc("Test updated description");
    eventParticipant.getPerson().setBirthName("Test birth name");
    Calendar calendar = Calendar.getInstance();
    calendar.setTime(event.getChangeDate());
    calendar.add(Calendar.DAY_OF_MONTH, 1);
    event.setChangeDate(calendar.getTime());
    SormasToSormasDto shareData = new SormasToSormasDto();
    shareData.setOriginInfo(createSormasToSormasOriginInfo(DEFAULT_SERVER_ID, true));
    shareData.setEvents(Collections.singletonList(new SormasToSormasEventDto(event)));
    shareData.setEventParticipants(Arrays.asList(new SormasToSormasEventParticipantDto(eventParticipant), new SormasToSormasEventParticipantDto(newEventParticipant)));
    shareData.setSamples(Collections.singletonList(new SormasToSormasSampleDto(newSample, Collections.emptyList(), Collections.emptyList())));
    SormasToSormasEncryptedDataDto encryptedData = encryptShareData(shareData);
    getSormasToSormasEventFacade().saveSharedEntities(encryptedData);
    EventDto returnedEvent = getEventFacade().getEventByUuid(event.getUuid(), false);
    assertThat(returnedEvent.getEventDesc(), is("Test updated description"));
    assertThat(returnedEvent.getReportingUser(), is(officer));
    List<SormasToSormasShareInfoDto> eventShares = getSormasToSormasShareInfoFacade().getIndexList(new SormasToSormasShareInfoCriteria().event(event.toReference()), 0, 100);
    assertThat(eventShares.get(0).isOwnershipHandedOver(), is(false));
    assertThat(getEventParticipantFacade().getEventParticipantByUuid(eventParticipant.getUuid()).getPerson().getBirthName(), is("Test birth name"));
    List<SormasToSormasShareInfoDto> eventParticipantShares = getSormasToSormasShareInfoFacade().getIndexList(new SormasToSormasShareInfoCriteria().eventParticipant(eventParticipant.toReference()), 0, 100);
    assertThat(eventParticipantShares.get(0).isOwnershipHandedOver(), is(false));
    EventParticipantDto returnedNewEventParticipant = getEventParticipantFacade().getEventParticipantByUuid(newEventParticipant.getUuid());
    assertThat(returnedNewEventParticipant.getSormasToSormasOriginInfo().isOwnershipHandedOver(), is(true));
    SampleDto returnedNewSample = getSampleFacade().getSampleByUuid(newSample.getUuid());
    assertThat(returnedNewSample.getSormasToSormasOriginInfo().isOwnershipHandedOver(), is(true));
}