Examples with ResultsTable ij.measure.ResultsTable used on opensource projects

Example 11 with ResultsTable

use of ij.measure.ResultsTable in project imagej1 by imagej.

the class Overlay method measure.

/**
 * Measures the ROIs in this overlay on the specified image
 * and returns the results as a ResultsTable.
 */
public ResultsTable measure(ImagePlus imp) {
    ResultsTable rt = new ResultsTable();
    for (int i = 0; i < size(); i++) {
        Roi roi = get(i);
        imp.setRoi(roi);
        Analyzer analyzer = new Analyzer(imp, rt);
        analyzer.measure();
    }
    imp.deleteRoi();
    return rt;
}

Example 12 with ResultsTable

use of ij.measure.ResultsTable in project imagej1 by imagej.

the class Opener method openTable.

/**
 * Opens a tab or comma delimited text file.
 */
public static void openTable(String path) {
    String name = "";
    if (path == null || path.equals("")) {
        OpenDialog od = new OpenDialog("Open Table...");
        String dir = od.getDirectory();
        name = od.getFileName();
        if (name == null)
            return;
        else
            path = dir + name;
    }
    try {
        ResultsTable rt = ResultsTable.open(path);
        if (rt != null) {
            rt.showRowNumbers(false);
            rt.show(name);
        }
    } catch (IOException e) {
        IJ.error("Open Table", e.getMessage());
    }
}

Example 13 with ResultsTable

use of ij.measure.ResultsTable in project imagej1 by imagej.

the class Interpreter method finishUp.

void finishUp() {
    if (batchMacro)
        batchMacroImage = WindowManager.getCurrentImage();
    func.updateDisplay();
    instance = null;
    if (!calledMacro || batchMacro) {
        if (batchMode)
            showingProgress = true;
        batchMode = false;
        imageTable = imageActivations = null;
        WindowManager.setTempCurrentImage(null);
    }
    if (func.plot != null) {
        func.plot.show();
        func.plot = null;
    }
    if (showingProgress)
        IJ.showProgress(0, 0);
    if (keysSet) {
        IJ.setKeyUp(KeyEvent.VK_ALT);
        IJ.setKeyUp(KeyEvent.VK_SHIFT);
        IJ.setKeyUp(KeyEvent.VK_SPACE);
    }
    if (rgbWeights != null)
        ColorProcessor.setWeightingFactors(rgbWeights[0], rgbWeights[1], rgbWeights[2]);
    if (func.writer != null)
        func.writer.close();
    func.roiManager = null;
    if (func.resultsPending) {
        ResultsTable rt = ResultsTable.getResultsTable();
        if (rt != null && rt.size() > 0)
            rt.show("Results");
    }
    if (IJ.isMacOSX() && selectCount > 0 && debugger == null) {
        Frame frame = WindowManager.getFrontWindow();
        if (frame != null && (frame instanceof ImageWindow))
            ImageWindow.setImageJMenuBar((ImageWindow) frame);
    }
}

Example 14 with ResultsTable

use of ij.measure.ResultsTable in project imagej1 by imagej.

the class SimpleCommands method imageToResults.

private void imageToResults() {
    ImagePlus imp = IJ.getImage();
    ImageProcessor ip = imp.getProcessor();
    ResultsTable rt = ResultsTable.createTableFromImage(ip);
    rt.showRowNumbers(false);
    rt.show("Results");
}

Example 15 with ResultsTable

use of ij.measure.ResultsTable in project mcib3d-core by mcib3d.

the class Objects3DPopulationColocalisation method getResultsTable.

public ResultsTable getResultsTable(boolean useValueObject) {
    if (needToComputeColoc)
        computeColocalisation();
    ResultsTable rt = new ResultsTable();
    // first raw background 0
    rt.incrementCounter();
    rt.setLabel("BG1", 0);
    rt.setValue("BG2", 0, colocs[0][0]);
    for (int ib = 0; ib < population2.getNbObjects(); ib++) {
        if (!useValueObject) {
            rt.setValue("B" + (ib + 1), 0, colocs[0][indices2.get(population2.getObject(ib).getValue())]);
        } else {
            rt.setValue("B" + population2.getObject(ib).getValue(), 0, colocs[0][indices2.get(population2.getObject(ib).getValue())]);
        }
    }
    for (int ia = 0; ia < population1.getNbObjects(); ia++) {
        rt.incrementCounter();
        if (!useValueObject) {
            rt.setLabel("A" + (ia + 1), ia + 1);
        } else {
            rt.setLabel("A" + population1.getObject(ia).getValue(), ia + 1);
        }
        rt.setValue("BG2", ia + 1, colocs[indices1.get(population2.getObject(ia).getValue())][0]);
        for (int ib = 0; ib < population2.getNbObjects(); ib++) {
            if (!useValueObject) {
                rt.setValue("B" + ib, (ia + 1), colocs[indices1.get(population1.getObject(ia).getValue())][indices2.get(population2.getObject(ib).getValue())]);
            } else {
                rt.setValue("B" + population2.getObject(ib).getValue(), ia + 1, colocs[indices1.get(population1.getObject(ia).getValue())][indices2.get(population2.getObject(ib).getValue())]);
            }
        }
    }
    return rt;
}