Examples with ResultsTable ij.measure.ResultsTable used on opensource projects

Example 21 with ResultsTable

use of ij.measure.ResultsTable in project mcib3d-core by mcib3d.

the class Objects3DPopulationColocalisation method getResultsTableAll.

/**
 * get the results of colocalisation as an ImageJ  Results Table
 *
 * @param useValueObject use the original value of objects
 *                       else use incremental values
 * @return the Results Table
 */
public ResultsTable getResultsTableAll(boolean useValueObject) {
    if (needToComputeColoc)
        computeColocalisation();
    ResultsTable rt = ResultsTable.getResultsTable();
    if (rt == null)
        rt = new ResultsTable();
    rt.reset();
    // temp colum index
    HashMap<String, Integer> colums = new HashMap<>(population2.getNbObjects());
    for (int ia = 0; ia < population1.getNbObjects(); ia++) {
        rt.incrementCounter();
        if (!useValueObject) {
            rt.setLabel("A" + ia, ia);
        } else {
            rt.setLabel("A" + population1.getObject(ia).getValue(), ia);
        }
        for (int ib = 0; ib < population2.getNbObjects(); ib++) {
            int coloc;
            String key = population1.getObject(ia).getValue() + "-" + population2.getObject(ib).getValue();
            if (colocs.containsKey(key))
                coloc = colocs.get(key).getVolumeColoc();
            else
                coloc = 0;
            if (ia == 0) {
                if (!useValueObject) {
                    rt.setValue("B" + ib, ia, coloc);
                    colums.put("B" + ib, rt.getColumnIndex("B" + ib));
                } else {
                    int v2 = population2.getObject(ib).getValue();
                    rt.setValue("B" + v2, ia, coloc);
                    colums.put("B" + v2, rt.getColumnIndex("B" + v2));
                }
            } else {
                if (!useValueObject) {
                    rt.setValue(colums.get("B" + ib), ia, coloc);
                } else {
                    int v2 = population2.getObject(ib).getValue();
                    rt.setValue(colums.get("B" + v2), ia, coloc);
                }
            }
        }
    }
    return rt;
}

Example 22 with ResultsTable

use of ij.measure.ResultsTable in project mcib3d-core by mcib3d.

the class Objects3DPopulationColocalisation method getResultsTableOnlyColoc.

public ResultsTable getResultsTableOnlyColoc(boolean useValueObject) {
    if (needToComputeColoc)
        computeColocalisation();
    IJ.log("Colocalisation completed, building results table");
    ResultsTable rt = ResultsTable.getResultsTable();
    if (rt == null)
        rt = new ResultsTable();
    rt.reset();
    for (int ia = 0; ia < population1.getNbObjects(); ia++) {
        Object3D object1 = population1.getObject(ia);
        rt.incrementCounter();
        if (!useValueObject) {
            rt.setLabel("A" + ia, ia);
        } else {
            rt.setLabel("A" + object1.getValue(), ia);
        }
        ArrayList<PairColocalisation> list = getObject1ColocalisationPairs(object1);
        for (int c = 0; c < list.size(); c++) {
            PairColocalisation colocalisation = list.get(c);
            if (colocalisation.getObject3D1() != object1)
                IJ.log("Pb colocalisation " + object1);
            Object3D object2 = colocalisation.getObject3D2();
            int i2 = population2.getIndexOf(object2);
            if (!useValueObject)
                rt.setValue("O" + (c + 1), ia, i2);
            else
                rt.setValue("O" + (c + 1), ia, object2.getValue());
            rt.setValue("V" + (c + 1), ia, colocalisation.getVolumeColoc());
            rt.setValue("P" + (c + 1), ia, (double) colocalisation.getVolumeColoc() / (double) object1.getVolumePixels());
        }
    }
    return rt;
}