Examples with TableView javafx.scene.control.TableView used on opensource projects

Example 61 with TableView

use of javafx.scene.control.TableView in project jvarkit by lindenb.

the class BamStage method createCigarElementTable.

/* create table of CigarElement */
private TableView<CigarElement> createCigarElementTable() {
    final TableView<CigarElement> table = new TableView<>();
    table.getColumns().add(makeColumn("Op.", O -> O.getOperator().name()));
    table.getColumns().add(makeColumn("Length", param -> param.getLength()));
    table.setPlaceholder(new Label("No Cigar"));
    return table;
}

Example 62 with TableView

use of javafx.scene.control.TableView in project jvarkit by lindenb.

the class BamStage method createSuplAlignTable.

/**
 * supplementary align table ...
 */
private TableView<SuplementaryAlign> createSuplAlignTable() {
    final TableView<SuplementaryAlign> table = new TableView<>();
    table.getColumns().add(makeColumn("REF", O -> O.contig));
    table.getColumns().add(formatIntegerColumn(makeColumn("POS", O -> O.pos)));
    table.getColumns().add(makeColumn("Strand", O -> O.strand));
    table.getColumns().add(makeColumn("NM", O -> O.nm));
    table.getColumns().add(makeColumn("MAPQ", O -> O.mapq));
    table.getColumns().add(makeColumn("Cigar", O -> O.cigar));
    table.setPlaceholder(new Label("No Read or no \"SA\" tag."));
    return table;
}

Example 63 with TableView

use of javafx.scene.control.TableView in project jvarkit by lindenb.

the class NgsStage method buildDictTab.

/**
 * build a table view for a Dictionary
 */
protected Tab buildDictTab(final SAMSequenceDictionary dict) {
    /* build dict Table */
    final TableView<SAMSequenceRecord> table = new TableView<>(dict == null ? FXCollections.observableArrayList() : FXCollections.observableArrayList(dict.getSequences()));
    table.getColumns().add(makeColumn("Name", SSR -> SSR.getSequenceName()));
    table.getColumns().add(formatIntegerColumn(makeColumn("Length", SSR -> SSR.getSequenceLength())));
    final Set<String> all_attributes = new HashSet<>();
    for (final SAMSequenceRecord ssr : dict.getSequences()) {
        all_attributes.addAll(ssr.getAttributes().stream().map(A -> A.getKey()).filter(S -> !(S.equals("Name") || S.equals("Length"))).collect(Collectors.toSet()));
    }
    for (final String key : all_attributes) {
        if (dict.getSequences().stream().filter(S -> S.getSpecies() != null && !S.getSpecies().trim().isEmpty()).findAny().isPresent()) {
            table.getColumns().add(makeColumn(key, SSR -> SSR.getAttribute(key)));
        }
    }
    final Tab tab = new Tab("Dict", table);
    tab.setClosable(false);
    table.setPlaceholder(new Label("No Dictionary."));
    return tab;
}

Example 64 with TableView

use of javafx.scene.control.TableView in project jvarkit by lindenb.

the class VcfStage method buildGenotypeTableRow.

/**
 * build Genotype table
 */
private TableView<Genotype> buildGenotypeTableRow(final VCFHeader header) {
    final TableView<Genotype> table = new TableView<Genotype>();
    /* sample */
    table.getColumns().add(makeColumn("Sample", G -> G.getSampleName()));
    for (final VCFFormatHeaderLine h : header.getFormatHeaderLines()) {
        final TableColumn<Genotype, String> newcol = new TableColumn<>(h.getID());
        newcol.setCellValueFactory(new Callback<TableColumn.CellDataFeatures<Genotype, String>, ObservableValue<String>>() {

            @Override
            public ObservableValue<String> call(CellDataFeatures<Genotype, String> param) {
                final String delim;
                Object o;
                if (param.getTableColumn().getText().equals(VCFConstants.GENOTYPE_KEY)) {
                    delim = param.getValue().isPhased() ? "|" : "/";
                    o = param.getValue().getAlleles().stream().map(A -> allele2stringConverter.apply(A)).collect(Collectors.toList());
                } else {
                    delim = ",";
                    o = param.getValue().getAnyAttribute(param.getTableColumn().getText());
                }
                if (o == null) {
                    return new ReadOnlyObjectWrapper<String>(null);
                }
                if (o instanceof List) {
                    List<?> L = (List<?>) o;
                    o = L.stream().map(S -> String.valueOf(S)).collect(Collectors.joining(delim)).toString();
                }
                return new ReadOnlyObjectWrapper<String>(String.valueOf(o));
            }
        });
        table.getColumns().add(newcol);
    }
    /* type */
    table.getColumns().add(makeColumn("Type", G -> G.getType().name()));
    table.setPlaceholder(new Label("No Genotype."));
    return table;
}

Example 65 with TableView

use of javafx.scene.control.TableView in project jvarkit by lindenb.

the class VcfStage method buildInfoTableRow.

/**
 * build INFO table
 */
private TableView<InfoTableRow> buildInfoTableRow() {
    final TableView<InfoTableRow> table = new TableView<>();
    table.getColumns().add(makeColumn("Key", R -> R.key));
    table.getColumns().add(makeColumn("Index", R -> R.index));
    final TableColumn<InfoTableRow, Object> t = makeColumn("Value", R -> R.value);
    t.setPrefWidth(300.0);
    table.getColumns().add(t);
    table.setPlaceholder(new Label("No INFO."));
    return table;
}