Examples with NotNull javax.validation.constraints.NotNull used on opensource projects

Example 66 with NotNull

use of javax.validation.constraints.NotNull in project mica2 by obiba.

the class MicaConfigDtos method fromDto.

@NotNull
<T extends EntityConfig> T fromDto(@NotNull Mica.EntityFormDto dto) {
    EntityConfig config = null;
    switch(dto.getType()) {
        case Network:
            config = new NetworkConfig();
            break;
        case Study:
            config = new StudyConfig();
            break;
        case DataCollectionEvent:
            config = new DataCollectionEventConfig();
            break;
        case Population:
            config = new PopulationConfig();
            break;
        case CollectedDataset:
            config = new StudyDatasetConfig();
            break;
        case HarmonizedDataset:
            config = new HarmonizationDatasetConfig();
            break;
        case HarmonizationStudy:
            config = new HarmonizationStudyConfig();
            break;
        case HarmonizationPopulation:
            config = new HarmonizationPopulationConfig();
            break;
    }
    config.setSchema(dto.getSchema());
    config.setDefinition(dto.getDefinition());
    return (T) config;
}

Example 67 with NotNull

use of javax.validation.constraints.NotNull in project mica2 by obiba.

the class NetworkSummaryDtos method asDto.

@NotNull
public Mica.NetworkSummaryDto asDto(@NotNull Network network, boolean asDraft) {
    Mica.NetworkSummaryDto.Builder builder = Mica.NetworkSummaryDto.newBuilder();
    NetworkState networkState = networkService.getEntityState(network.getId());
    builder.setId(network.getId()).addAllAcronym(localizedStringDtos.asDto(network.getAcronym())).addAllName(localizedStringDtos.asDto(network.getName())).setPublished(networkState.isPublished());
    Mica.PermissionsDto permissionsDto = permissionsDtos.asDto(network);
    if (asDraft) {
        // 
        builder.setTimestamps(TimestampsDtos.asDto(network)).setPublished(// 
        networkState.isPublished()).setExtension(Mica.EntityStateDto.networkSummaryState, entityStateDtos.asDto(networkState).setPermissions(permissionsDto).build());
    }
    builder.setPermissions(permissionsDto);
    network.getStudyIds().stream().filter(sId -> asDraft && subjectAclService.isPermitted("/draft/individual-study", "VIEW", sId) || subjectAclService.isAccessible("/individual-study", sId)).forEach(sId -> {
        try {
            builder.addStudyIds(sId);
        } catch (NoSuchEntityException e) {
            log.warn("Study not found in network {}: {}", network.getId(), sId);
        // ignore
        }
    });
    network.getNetworkIds().stream().filter(nId -> asDraft && subjectAclService.isPermitted("/draft/network", "VIEW", nId) || subjectAclService.isAccessible("/network", nId)).forEach(nId -> {
        try {
            builder.addNetworkIds(nId);
        } catch (NoSuchEntityException e) {
            log.warn("Network not found in network {}: {}", network.getId(), nId);
        // ignore
        }
    });
    return builder.build();
}

Example 68 with NotNull

use of javax.validation.constraints.NotNull in project mica2 by obiba.

the class PopulationDtos method fromDto.

@NotNull
DataCollectionEvent fromDto(@NotNull PopulationDto.DataCollectionEventDto dto) {
    DataCollectionEvent dce = new DataCollectionEvent();
    dce.setId(dto.getId());
    if (dto.getNameCount() > 0)
        dce.setName(localizedStringDtos.fromDto(dto.getNameList()));
    if (dto.getDescriptionCount() > 0)
        dce.setDescription(localizedStringDtos.fromDto(dto.getDescriptionList()));
    if (dto.hasStartYear()) {
        dce.setStart(dto.getStartYear(), dto.hasStartMonth() ? dto.getStartMonth() : null, Strings.isNullOrEmpty(dto.getStartDay()) ? null : LocalDate.parse(dto.getStartDay(), DateTimeFormatter.ISO_DATE));
    }
    if (dto.hasEndYear()) {
        dce.setEnd(dto.getEndYear(), dto.hasEndMonth() ? dto.getEndMonth() : null, Strings.isNullOrEmpty(dto.getEndDay()) ? null : LocalDate.parse(dto.getEndDay(), DateTimeFormatter.ISO_DATE));
    }
    if (dto.hasContent() && !Strings.isNullOrEmpty(dto.getContent()))
        dce.setModel(JSONUtils.toMap(dto.getContent()));
    else
        dce.setModel(new HashMap<>());
    if (dto.hasWeight()) {
        dce.setWeight(dto.getWeight());
    }
    return dce;
}

Example 69 with NotNull

use of javax.validation.constraints.NotNull in project mica2 by obiba.

the class StudyDtos method fromDto.

@NotNull
BaseStudy fromDto(@NotNull Mica.StudyDtoOrBuilder dto) {
    Assert.isTrue(dto.hasExtension(Mica.CollectionStudyDto.type) || dto.hasExtension(Mica.HarmonizationStudyDto.type), "StudyDto must of a type extension.");
    BaseStudy study = dto.hasExtension(Mica.CollectionStudyDto.type) ? new Study() : new HarmonizationStudy();
    if (dto.hasId())
        study.setId(dto.getId());
    if (dto.getNameCount() > 0)
        study.setName(localizedStringDtos.fromDto(dto.getNameList()));
    if (dto.getAcronymCount() > 0)
        study.setAcronym(localizedStringDtos.fromDto(dto.getAcronymList()));
    if (dto.hasLogo())
        study.setLogo(attachmentDtos.fromDto(dto.getLogo()));
    if (dto.hasTimestamps())
        TimestampsDtos.fromDto(dto.getTimestamps(), study);
    if (dto.getObjectivesCount() > 0)
        study.setObjectives(localizedStringDtos.fromDto(dto.getObjectivesList()));
    if (dto.hasOpal())
        study.setOpal(dto.getOpal());
    if (dto.getPopulationsCount() > 0) {
        study.setPopulations(dto.getPopulationsList().stream().map(populationDtos::fromDto).collect(Collectors.toCollection(TreeSet<org.obiba.mica.study.domain.Population>::new)));
    }
    if (dto.getMembershipSortOrderCount() > 0) {
        Map<String, List<String>> membershipSortOrder = new HashMap<>();
        dto.getMembershipSortOrderList().forEach(membership -> {
            membershipSortOrder.put(membership.getRole(), membership.getPersonIdsList());
        });
        study.setMembershipSortOrder(membershipSortOrder);
    }
    if (dto.hasContent() && !Strings.isNullOrEmpty(dto.getContent()))
        study.setModel(JSONUtils.toMap(dto.getContent()));
    else
        study.setModel(new HashMap<>());
    return study;
}

Example 70 with NotNull

use of javax.validation.constraints.NotNull in project syndesis by syndesisio.

the class IntegrationSupportHandler method export.

@GET
@Path("/export.zip")
@Produces(MediaType.APPLICATION_OCTET_STREAM)
public StreamingOutput export(@NotNull @QueryParam("id") @ApiParam(required = true) List<String> requestedIds) throws IOException {
    List<String> ids = requestedIds;
    if (ids == null || ids.isEmpty()) {
        throw new ClientErrorException("No 'integration' query parameter specified.", Response.Status.BAD_REQUEST);
    }
    LinkedHashSet<String> extensions = new LinkedHashSet<>();
    CloseableJsonDB memJsonDB = MemorySqlJsonDB.create(jsonDB.getIndexes());
    if (ids.contains("all")) {
        ids = new ArrayList<>();
        for (Integration integration : dataManager.fetchAll(Integration.class)) {
            ids.add(integration.getId().get());
        }
    }
    for (String id : ids) {
        Integration integration = integrationHandler.getIntegration(id);
        addToExport(memJsonDB, integration);
        resourceManager.collectDependencies(integration.getSteps(), true).stream().filter(Dependency::isExtension).map(Dependency::getId).forEach(extensions::add);
    }
    LOG.debug("Extensions: {}", extensions);
    return out -> {
        try (ZipOutputStream tos = new ZipOutputStream(out)) {
            ModelExport exportObject = ModelExport.of(Schema.VERSION);
            addEntry(tos, EXPORT_MODEL_INFO_FILE_NAME, Json.writer().writeValueAsBytes(exportObject));
            addEntry(tos, EXPORT_MODEL_FILE_NAME, memJsonDB.getAsByteArray("/"));
            memJsonDB.close();
            for (String extensionId : extensions) {
                addEntry(tos, "extensions/" + Names.sanitize(extensionId) + ".jar", IOUtils.toByteArray(extensionDataManager.getExtensionBinaryFile(extensionId)));
            }
        }
    };
}