Examples with Pair mpicbg.trakem2.util.Pair used on opensource projects

Example 26 with Pair

use of mpicbg.trakem2.util.Pair in project vcell by virtualcell.

the class PlotROIStats method run.

@Override
public void run() {
    Plot plot = new ColorPlot("ROI Mean Intensity", "Time", "Mean Intensity");
    StringBuilder legendLabels = new StringBuilder();
    for (RandomAccessibleInterval<T> data : datasetROIsMap.keySet()) {
        if (data instanceof Dataset) {
            legendLabels.append(((Dataset) data).getName());
            legendLabels.append(": ");
        }
        List<Overlay> overlays = datasetROIsMap.get(data);
        for (int i = 0; i < overlays.size(); i++) {
            Overlay overlay = overlays.get(i);
            RandomAccessibleInterval<T> cropped = crop(data, overlay);
            Pair<double[], double[]> xyPair = (Pair<double[], double[]>) ops.run("imageStatsForPlotting", ImageStatsForPlotting.MEAN, cropped);
            plot.addPoints(xyPair.getA(), xyPair.getB(), Plot.LINE);
            legendLabels.append("ROI ");
            legendLabels.append(i + 1);
            legendLabels.append("\n");
        }
    }
    plot.addLegend(legendLabels.toString());
    plot.show();
}

Example 27 with Pair

use of mpicbg.trakem2.util.Pair in project vcell by virtualcell.

the class PlotImageStats method run.

@Override
public void run() {
    Plot plot = new ColorPlot("Frame mean intensity", "Time", "Mean intensity");
    StringBuilder legendLabels = new StringBuilder();
    for (int i = 0; i < datasets.size(); i++) {
        RandomAccessibleInterval<T> data = datasets.get(i);
        if (data instanceof Dataset) {
            legendLabels.append(((Dataset) data).getName());
            legendLabels.append(": ");
        }
        Pair<double[], double[]> xyPair = (Pair<double[], double[]>) ops.run("imageStatsForPlotting", ImageStatsForPlotting.MEAN, data, mask);
        plot.addPoints(xyPair.getA(), xyPair.getB(), Plot.LINE);
        legendLabels.append("ROI ");
        legendLabels.append(i + 1);
        legendLabels.append("\n");
    }
    plot.addLegend(legendLabels.toString());
    plot.show();
}

Example 28 with Pair

use of mpicbg.trakem2.util.Pair in project mica2 by obiba.

the class AbstractFileSystemResource method doGetAttachment.

protected Attachment doGetAttachment(String path, @Nullable String version, @Nullable String shareKey) {
    String basePath = normalizePath(path);
    if (isPublishedFileSystem())
        subjectAclService.checkAccess("/file", basePath);
    else
        subjectAclService.checkPermission("/draft/file", "VIEW", basePath, shareKey);
    if (path.endsWith("/"))
        throw new IllegalArgumentException("Folder download is not supported");
    Pair<String, String> pathName = FileSystemService.extractPathName(basePath);
    AttachmentState state = fileSystemService.getAttachmentState(pathName.getKey(), pathName.getValue(), isPublishedFileSystem());
    if (isPublishedFileSystem())
        return state.getPublishedAttachment();
    if (Strings.isNullOrEmpty(version))
        return state.getAttachment();
    List<Attachment> attachments = fileSystemService.getAttachmentRevisions(state).stream().filter(a -> a.getId().equals(version)).collect(Collectors.toList());
    if (attachments.isEmpty())
        throw new NoSuchElementException("No file version " + version + " found at path: " + basePath);
    return attachments.get(0);
}

Example 29 with Pair

use of mpicbg.trakem2.util.Pair in project android_packages_apps_crDroidSettings by crdroidandroid.

the class PagerSlidingTabStrip method getIndicatorCoordinates.

public Pair<Float, Float> getIndicatorCoordinates() {
    // default: line below current tab
    View currentTab = mTabsContainer.getChildAt(mCurrentPosition);
    float lineLeft = currentTab.getLeft();
    float lineRight = currentTab.getRight();
    // if there is an offset, start interpolating left and right coordinates between current and next tab
    if (mCurrentPositionOffset > 0f && mCurrentPosition < mTabCount - 1) {
        View nextTab = mTabsContainer.getChildAt(mCurrentPosition + 1);
        final float nextTabLeft = nextTab.getLeft();
        final float nextTabRight = nextTab.getRight();
        lineLeft = (mCurrentPositionOffset * nextTabLeft + (1f - mCurrentPositionOffset) * lineLeft);
        lineRight = (mCurrentPositionOffset * nextTabRight + (1f - mCurrentPositionOffset) * lineRight);
    }
    return new Pair<>(lineLeft, lineRight);
}

Example 30 with Pair

use of mpicbg.trakem2.util.Pair in project incubator-gobblin by apache.

the class CouchbaseWriter method write.

@Override
public Future<WriteResponse> write(final D record, final WriteCallback callback) {
    assertRecordWritable(record);
    if (record instanceof TupleDocument) {
        ((TupleDocument) record).content().value1().retain();
    }
    Observable<D> observable = _bucket.async().upsert(record);
    if (callback == null) {
        return new WriteResponseFuture<>(observable.timeout(_operationTimeout, _operationTimeunit).toBlocking().toFuture(), _defaultWriteResponseMapper);
    } else {
        final AtomicBoolean callbackFired = new AtomicBoolean(false);
        final BlockingQueue<Pair<WriteResponse, Throwable>> writeResponseQueue = new ArrayBlockingQueue<>(1);
        final Future<WriteResponse> writeResponseFuture = new Future<WriteResponse>() {

            @Override
            public boolean cancel(boolean mayInterruptIfRunning) {
                return false;
            }

            @Override
            public boolean isCancelled() {
                return false;
            }

            @Override
            public boolean isDone() {
                return callbackFired.get();
            }

            @Override
            public WriteResponse get() throws InterruptedException, ExecutionException {
                Pair<WriteResponse, Throwable> writeResponseThrowablePair = writeResponseQueue.take();
                return getWriteResponseorThrow(writeResponseThrowablePair);
            }

            @Override
            public WriteResponse get(long timeout, TimeUnit unit) throws InterruptedException, ExecutionException, TimeoutException {
                Pair<WriteResponse, Throwable> writeResponseThrowablePair = writeResponseQueue.poll(timeout, unit);
                if (writeResponseThrowablePair == null) {
                    throw new TimeoutException("Timeout exceeded while waiting for future to be done");
                } else {
                    return getWriteResponseorThrow(writeResponseThrowablePair);
                }
            }
        };
        observable.timeout(_operationTimeout, _operationTimeunit).subscribe(new Subscriber<D>() {

            @Override
            public void onCompleted() {
            }

            @Override
            public void onError(Throwable e) {
                callbackFired.set(true);
                writeResponseQueue.add(new Pair<WriteResponse, Throwable>(null, e));
                callback.onFailure(e);
            }

            @Override
            public void onNext(D doc) {
                try {
                    callbackFired.set(true);
                    WriteResponse writeResponse = new GenericWriteResponse<D>(doc);
                    writeResponseQueue.add(new Pair<WriteResponse, Throwable>(writeResponse, null));
                    callback.onSuccess(writeResponse);
                } finally {
                    if (doc instanceof TupleDocument) {
                        ((TupleDocument) doc).content().value1().release();
                    }
                }
            }
        });
        return writeResponseFuture;
    }
}