Examples with Pair net.imglib2.util.Pair used on opensource projects

Example 6 with Pair

use of net.imglib2.util.Pair in project cassandra by apache.

the class SampledOpDistributionFactory method get.

public OpDistribution get(boolean isWarmup, MeasurementSink sink) {
    PartitionGenerator generator = newGenerator();
    List<Pair<Operation, Double>> operations = new ArrayList<>();
    for (Map.Entry<T, Double> ratio : ratios.entrySet()) {
        List<? extends Operation> ops = get(new Timer(ratio.getKey().toString(), sink), generator, ratio.getKey(), isWarmup);
        for (Operation op : ops) operations.add(new Pair<>(op, ratio.getValue() / ops.size()));
    }
    return new SampledOpDistribution(new EnumeratedDistribution<>(operations), clustering.get());
}

Example 7 with Pair

use of net.imglib2.util.Pair in project android by nextcloud.

the class MainApp method cleanOldEntries.

private static void cleanOldEntries() {
    // previous versions of application created broken entries in the SyncedFolderProvider
    // database, and this cleans all that and leaves 1 (newest) entry per synced folder
    Context context = getAppContext();
    if (!PreferenceManager.getLegacyClean(context)) {
        SyncedFolderProvider syncedFolderProvider = new SyncedFolderProvider(context.getContentResolver());
        List<SyncedFolder> syncedFolderList = syncedFolderProvider.getSyncedFolders();
        Map<Pair<String, String>, Long> syncedFolders = new HashMap<>();
        ArrayList<Long> ids = new ArrayList<>();
        for (SyncedFolder syncedFolder : syncedFolderList) {
            Pair<String, String> checkPair = new Pair<>(syncedFolder.getAccount(), syncedFolder.getLocalPath());
            if (syncedFolders.containsKey(checkPair)) {
                if (syncedFolder.getId() > syncedFolders.get(checkPair)) {
                    syncedFolders.put(checkPair, syncedFolder.getId());
                }
            } else {
                syncedFolders.put(checkPair, syncedFolder.getId());
            }
        }
        ids.addAll(syncedFolders.values());
        if (ids.size() > 0) {
            syncedFolderProvider.deleteSyncedFoldersNotInList(mContext, ids);
        } else {
            PreferenceManager.setLegacyClean(context, true);
        }
    }
}

Example 8 with Pair

use of net.imglib2.util.Pair in project gatk-protected by broadinstitute.

the class CNLOHCaller method calcNewRhos.

private double[] calcNewRhos(final List<ACNVModeledSegment> segments, final List<double[][][]> responsibilitiesBySeg, final double lambda, final double[] rhos, final int[] mVals, final int[] nVals, final JavaSparkContext ctx) {
    // Since, we pass in the entire responsibilities matrix, we need the correct index for each rho.  That, and the
    //  fact that this is a univariate objective function, means we need to create an instance for each rho.  And
    //  then we blast across Spark.
    final List<Pair<? extends Function<Double, Double>, SearchInterval>> objectives = IntStream.range(0, rhos.length).mapToObj(i -> new Pair<>(new Function<Double, Double>() {

        @Override
        public Double apply(Double rho) {
            return calculateESmnObjective(rho, segments, responsibilitiesBySeg, mVals, nVals, lambda, i);
        }
    }, new SearchInterval(0.0, 1.0, rhos[i]))).collect(Collectors.toList());
    final JavaRDD<Pair<? extends Function<Double, Double>, SearchInterval>> objectivesRDD = ctx.parallelize(objectives);
    final List<Double> resultsAsDouble = objectivesRDD.map(objective -> optimizeIt(objective.getFirst(), objective.getSecond())).collect();
    return resultsAsDouble.stream().mapToDouble(Double::doubleValue).toArray();
}

Example 9 with Pair

use of net.imglib2.util.Pair in project gatk by broadinstitute.

the class CNLOHCaller method calcNewRhos.

private double[] calcNewRhos(final List<ACNVModeledSegment> segments, final List<double[][][]> responsibilitiesBySeg, final double lambda, final double[] rhos, final int[] mVals, final int[] nVals, final JavaSparkContext ctx) {
    // Since, we pass in the entire responsibilities matrix, we need the correct index for each rho.  That, and the
    //  fact that this is a univariate objective function, means we need to create an instance for each rho.  And
    //  then we blast across Spark.
    final List<Pair<? extends Function<Double, Double>, SearchInterval>> objectives = IntStream.range(0, rhos.length).mapToObj(i -> new Pair<>(new Function<Double, Double>() {

        @Override
        public Double apply(Double rho) {
            return calculateESmnObjective(rho, segments, responsibilitiesBySeg, mVals, nVals, lambda, i);
        }
    }, new SearchInterval(0.0, 1.0, rhos[i]))).collect(Collectors.toList());
    final JavaRDD<Pair<? extends Function<Double, Double>, SearchInterval>> objectivesRDD = ctx.parallelize(objectives);
    final List<Double> resultsAsDouble = objectivesRDD.map(objective -> optimizeIt(objective.getFirst(), objective.getSecond())).collect();
    return resultsAsDouble.stream().mapToDouble(Double::doubleValue).toArray();
}

Example 10 with Pair

use of net.imglib2.util.Pair in project twicalico by moko256.

the class MainActivity method onCreate.

@Override
public void onCreate(Bundle savedInstanceState) {
    super.onCreate(savedInstanceState);
    setContentView(R.layout.activity_main);
    subscription = new CompositeSubscription();
    toolbar = findViewById(R.id.toolbar);
    setSupportActionBar(toolbar);
    toolbar.getChildAt(0).setOnClickListener(v -> {
        Fragment fragment = getMainFragment();
        if (fragment instanceof MovableTopInterface) {
            ((MovableTopInterface) fragment).moveToTop();
        }
    });
    drawer = findViewById(R.id.drawer_layout);
    ActionBarDrawerToggle toggle = new ActionBarDrawerToggle(this, drawer, toolbar, R.string.navigation_drawer_open, R.string.navigation_drawer_close);
    drawer.addDrawerListener(toggle);
    toggle.syncState();
    drawer.addDrawerListener(new DrawerLayout.DrawerListener() {

        @Override
        public void onDrawerSlide(@NonNull View drawerView, float slideOffset) {
        }

        @Override
        public void onDrawerOpened(@NonNull View drawerView) {
        }

        @Override
        public void onDrawerClosed(@NonNull View drawerView) {
            if (isDrawerAccountsSelection) {
                changeIsDrawerAccountsSelection();
            }
        }

        @Override
        public void onDrawerStateChanged(int newState) {
        }
    });
    navigationView = findViewById(R.id.nav_view);
    navigationView.setNavigationItemSelectedListener(item -> {
        int id = item.getItemId();
        if (!item.isChecked()) {
            switch(id) {
                case R.id.nav_timeline:
                    replaceFragment(new HomeTimeLineFragment());
                    break;
                case R.id.nav_mentions:
                    replaceFragment(new MentionsFragment());
                    break;
                case R.id.nav_account:
                    startMyUserActivity();
                    break;
                case R.id.nav_follow_and_follower:
                    replaceFragment(new MyFollowFollowerFragment());
                    break;
                case R.id.nav_like:
                    replaceFragment(UserLikeFragment.newInstance(GlobalApplication.userId));
                    break;
                case R.id.nav_settings:
                    startActivity(new Intent(this, SettingsActivity.class));
                    break;
            }
        }
        drawer.closeDrawer(GravityCompat.START);
        return (id != R.id.nav_settings) && (id != R.id.nav_account);
    });
    headerView = navigationView.inflateHeaderView(R.layout.nav_header_main);
    userNameText = headerView.findViewById(R.id.user_name);
    userIdText = headerView.findViewById(R.id.user_id);
    userImage = headerView.findViewById(R.id.user_image);
    userBackgroundImage = headerView.findViewById(R.id.user_bg_image);
    userBackgroundImage.setOnClickListener(v -> changeIsDrawerAccountsSelection());
    updateDrawerImage();
    accountListView = new RecyclerView(this);
    accountListView.setLayoutParams(new LinearLayout.LayoutParams(ViewGroup.LayoutParams.MATCH_PARENT, ViewGroup.LayoutParams.WRAP_CONTENT));
    accountListView.setLayoutManager(new LinearLayoutManager(this));
    accountListView.setOverScrollMode(View.OVER_SCROLL_NEVER);
    accountListView.setVisibility(View.GONE);
    navigationView.addHeaderView(accountListView);
    SelectAccountsAdapter adapter = new SelectAccountsAdapter(this);
    adapter.setOnImageButtonClickListener(accessToken -> {
        drawer.closeDrawer(GravityCompat.START);
        if (accessToken.getUserId() != GlobalApplication.userId) {
            PreferenceManager.getDefaultSharedPreferences(this).edit().putString("AccountKey", accessToken.getKeyString()).apply();
            ((GlobalApplication) getApplication()).initTwitter(accessToken);
            updateDrawerImage();
            clearAndPrepareFragment();
        }
    });
    adapter.setOnAddButtonClickListener(v -> {
        PreferenceManager.getDefaultSharedPreferences(this).edit().putString("AccountKey", "-1").apply();
        GlobalApplication.twitter = null;
        startActivity(new Intent(this, OAuthActivity.class).setFlags(Intent.FLAG_ACTIVITY_CLEAR_TASK | Intent.FLAG_ACTIVITY_NEW_TASK));
    });
    adapter.setOnRemoveButtonClickListener(v -> new AlertDialog.Builder(this).setMessage(R.string.confirm_logout).setCancelable(true).setPositiveButton(R.string.do_logout, (dialog, i) -> {
        SharedPreferences defaultSharedPreferences = PreferenceManager.getDefaultSharedPreferences(this);
        TokenSQLiteOpenHelper helper = new TokenSQLiteOpenHelper(this);
        helper.deleteAccessToken(helper.getAccessToken(defaultSharedPreferences.getString("AccountKey", "-1")));
        int point = helper.getSize() - 1;
        if (point != -1) {
            AccessToken accessToken = helper.getAccessTokens()[point];
            defaultSharedPreferences.edit().putString("AccountKey", accessToken.getKeyString()).apply();
            ((GlobalApplication) getApplication()).initTwitter(accessToken);
            updateDrawerImage();
            clearAndPrepareFragment();
        } else {
            adapter.getOnAddButtonClickListener().onClick(v);
        }
        helper.close();
    }).setNeutralButton(R.string.back, (dialog, i) -> dialog.cancel()).show());
    accountListView.setAdapter(adapter);
    subscription.add(Single.create(singleSubscriber -> {
        TokenSQLiteOpenHelper helper = new TokenSQLiteOpenHelper(this);
        AccessToken[] accessTokens = helper.getAccessTokens();
        helper.close();
        ArrayList<Pair<User, AccessToken>> r = new ArrayList<>(accessTokens.length);
        for (AccessToken accessToken : accessTokens) {
            long id = accessToken.getUserId();
            CachedUsersSQLiteOpenHelper userHelper = new CachedUsersSQLiteOpenHelper(this, id, accessToken.getType() == Type.TWITTER);
            User user = userHelper.getCachedUser(id);
            if (user == null) {
                try {
                    user = ((GlobalApplication) getApplication()).getTwitterInstance(accessToken).verifyCredentials();
                    userHelper.addCachedUser(user);
                } catch (TwitterException e) {
                    singleSubscriber.onError(e);
                    return;
                } finally {
                    userHelper.close();
                }
            }
            r.add(new Pair<>(user, accessToken));
        }
        singleSubscriber.onSuccess(r);
    }).subscribeOn(Schedulers.io()).observeOn(AndroidSchedulers.mainThread()).subscribe(o -> {
        ArrayList<Pair<User, AccessToken>> pairs = (ArrayList<Pair<User, AccessToken>>) o;
        adapter.getImagesList().addAll(pairs);
        adapter.notifyDataSetChanged();
    }, Throwable::printStackTrace));
    findViewById(R.id.fab).setOnClickListener(v -> startActivity(new Intent(this, PostActivity.class)));
    tabLayout = findViewById(R.id.toolbar_tab);
    tabLayout.addOnTabSelectedListener(new TabLayout.OnTabSelectedListener() {

        @Override
        public void onTabSelected(TabLayout.Tab tab) {
        }

        @Override
        public void onTabUnselected(TabLayout.Tab tab) {
        }

        @Override
        public void onTabReselected(TabLayout.Tab tab) {
            Fragment fragment = ((FragmentPagerAdapter) ((UseTabsInterface) getMainFragment()).getTabsViewPager().getAdapter()).getFragment(tab.getPosition());
            if (fragment instanceof MovableTopInterface) {
                ((MovableTopInterface) fragment).moveToTop();
            }
        }
    });
    tweetListViewPool = new RecyclerView.RecycledViewPool();
    userListViewPool = new RecyclerView.RecycledViewPool();
    getSupportFragmentManager().addOnBackStackChangedListener(() -> attachFragment(getMainFragment()));
    if (savedInstanceState == null) {
        prepareFragment();
    }
}