Examples with Channel ome.xml.model.Channel used on opensource projects

Example 6 with Channel

use of ome.xml.model.Channel in project bioformats by openmicroscopy.

the class PumpWithLightSourceSettingsTest method setUp.

@BeforeClass
public void setUp() throws Exception {
    Instrument instrument = new Instrument();
    instrument.setID("Instrument:0");
    // Add a Laser with an Arc pump
    Laser laser = new Laser();
    laser.setID("Laser:0");
    Arc pump = new Arc();
    pump.setID("Arc:0");
    laser.linkPump(pump);
    instrument.addLightSource(laser);
    instrument.addLightSource(pump);
    ome.addInstrument(instrument);
    // Add an Image/Pixels with a LightSourceSettings reference to the Pump
    // on one of its channels.
    Image image = new Image();
    image.setID("Image:0");
    Pixels pixels = new Pixels();
    pixels.setID("Pixels:0");
    Channel channel = new Channel();
    channel.setID("Channel:0");
    LightSourceSettings settings = new LightSourceSettings();
    settings.setID("Arc:0");
    channel.setLightSourceSettings(settings);
    pixels.addChannel(channel);
    image.setPixels(pixels);
    ome.addImage(image);
}

Example 7 with Channel

use of ome.xml.model.Channel in project bioformats by openmicroscopy.

the class GenericExcitationMapTest method setUp.

@BeforeClass
public void setUp() throws Exception {
    Instrument instrument = new Instrument();
    instrument.setID("Instrument:0");
    // Add a GenericExcitationSource with an Map
    GenericExcitationSource geSource = new GenericExcitationSource();
    geSource.setID("LightSource:0");
    List<MapPair> dataMap = new ArrayList<MapPair>();
    dataMap.add(new MapPair("a", "1"));
    dataMap.add(new MapPair("d", "2"));
    dataMap.add(new MapPair("c", "3"));
    dataMap.add(new MapPair("b", "4"));
    dataMap.add(new MapPair("e", "5"));
    dataMap.add(new MapPair("c", "6"));
    assertEquals(6, dataMap.size());
    geSource.setMap(dataMap);
    instrument.addLightSource(geSource);
    ome.addInstrument(instrument);
    // Add an Image/Pixels with a LightSourceSettings reference to the
    // GenericExcitationSource on one of its channels.
    Image image = new Image();
    image.setID("Image:0");
    Pixels pixels = new Pixels();
    pixels.setID("Pixels:0");
    Channel channel = new Channel();
    channel.setID("Channel:0");
    LightSourceSettings settings = new LightSourceSettings();
    settings.setID("LightSource:0");
    channel.setLightSourceSettings(settings);
    pixels.addChannel(channel);
    image.setPixels(pixels);
    ome.addImage(image);
}

Example 8 with Channel

use of ome.xml.model.Channel in project bioformats by openmicroscopy.

the class InOutCurrentTest method testValidChannelAnnotation.

@Test(dependsOnMethods = { "testValidChannelNode" })
public void testValidChannelAnnotation() {
    Channel c = ome.getImage(0).getPixels().getChannel(0);
    Annotation n = c.getLinkedAnnotation(0);
    assertNotNull(n);
    assertTrue(n instanceof XMLAnnotation);
    assertEquals(CHANNEL_ANNOTATION_ID, n.getID());
    assertEquals(n.getNamespace(), GENERAL_ANNOTATION_NAMESPACE);
    assertEquals(CHANNEL_ANNOTATION_VALUE, ((XMLAnnotation) n).getValue());
}

Example 9 with Channel

use of ome.xml.model.Channel in project bioformats by openmicroscopy.

the class InOutCurrentTest method testValidChannelNode.

@Test(dependsOnMethods = { "testValidPixelsNode" })
public void testValidChannelNode() {
    Pixels pixels = ome.getImage(0).getPixels();
    assertEquals(3, pixels.sizeOfChannelList());
    for (Channel channel : pixels.copyChannelList()) {
        assertNotNull(channel.getID());
    }
}

Example 10 with Channel

use of ome.xml.model.Channel in project bioformats by openmicroscopy.

the class Upgrade200909Test method validateUpgrade.

@Test
public void validateUpgrade() throws ServiceException {
    assertEquals(1, ome.sizeOfImageList());
    Image image = ome.getImage(0);
    Pixels pixels = image.getPixels();
    assertNotNull(pixels);
    assertEquals(1, pixels.sizeOfChannelList());
    Channel channel = pixels.getChannel(0);
    // XSLT transform of Channel.AcquisitionMode
    // <map from="LaserScanningMicroscopy" to="LaserScanningConfocalMicroscopy"/>
    assertEquals(AcquisitionMode.LASERSCANNINGCONFOCALMICROSCOPY, channel.getAcquisitionMode());
}