Examples with OMEModelImpl ome.xml.model.OMEModelImpl used on opensource projects

Example 6 with OMEModelImpl

use of ome.xml.model.OMEModelImpl in project bioformats by openmicroscopy.

the class PumpWithLightSourceSettingsTest method testLightSourceType.

@Test
public void testLightSourceType() throws Exception {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    DocumentBuilder parser = factory.newDocumentBuilder();
    Document document = parser.newDocument();
    // Produce a valid OME DOM element hierarchy
    Element root = ome.asXMLElement(document);
    SPWModelMock.postProcess(root, document, false);
    OMEModel model = new OMEModelImpl();
    ome = new OME(document.getDocumentElement(), model);
    model.resolveReferences();
}

Example 7 with OMEModelImpl

use of ome.xml.model.OMEModelImpl in project bioformats by openmicroscopy.

the class MapAnnotationTest method testMapAnnotationValueContent.

@Test
public void testMapAnnotationValueContent() throws Exception {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    DocumentBuilder parser = factory.newDocumentBuilder();
    Document document = parser.newDocument();
    // Produce a valid OME DOM element hierarchy
    Element root = ome.asXMLElement(document);
    SPWModelMock.postProcess(root, document, false);
    OMEModel model = new OMEModelImpl();
    ome = new OME(document.getDocumentElement(), model);
    model.resolveReferences();
    assertNotNull(ome);
    assertEquals(ome.getImage(0).getPixels().getID(), "Pixels:0");
    assertNotNull(ome.getImage(0).getLinkedAnnotation(0));
    MapAnnotation mapAnnotation = (MapAnnotation) ome.getImage(0).getLinkedAnnotation(0);
    List<MapPair> dataMap = mapAnnotation.getValue();
    assertEquals(6, dataMap.size());
    assertEquals("a", dataMap.get(0).getName());
    assertEquals("1", dataMap.get(0).getValue());
    assertEquals("d", dataMap.get(1).getName());
    assertEquals("2", dataMap.get(1).getValue());
    assertEquals("c", dataMap.get(2).getName());
    assertEquals("3", dataMap.get(2).getValue());
    assertEquals("b", dataMap.get(3).getName());
    assertEquals("4", dataMap.get(3).getValue());
    assertEquals("e", dataMap.get(4).getName());
    assertEquals("5", dataMap.get(4).getValue());
    assertEquals("c", dataMap.get(5).getName());
    assertEquals("6", dataMap.get(5).getValue());
}

Example 8 with OMEModelImpl

use of ome.xml.model.OMEModelImpl in project bioformats by openmicroscopy.

the class MapAnnotationTest method testMapAnnotationValid.

@Test
public void testMapAnnotationValid() throws Exception {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    DocumentBuilder parser = factory.newDocumentBuilder();
    Document document = parser.newDocument();
    // Produce a valid OME DOM element hierarchy
    Element root = ome.asXMLElement(document);
    SPWModelMock.postProcess(root, document, false);
    OMEModel model = new OMEModelImpl();
    ome = new OME(document.getDocumentElement(), model);
    model.resolveReferences();
}

Example 9 with OMEModelImpl

use of ome.xml.model.OMEModelImpl in project bioformats by openmicroscopy.

the class ImagingEnvironmentMapTest method testGenericExcitationSourceValid.

@Test
public void testGenericExcitationSourceValid() throws Exception {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    DocumentBuilder parser = factory.newDocumentBuilder();
    Document document = parser.newDocument();
    // Produce a valid OME DOM element hierarchy
    Element root = ome.asXMLElement(document);
    SPWModelMock.postProcess(root, document, false);
    OMEModel model = new OMEModelImpl();
    ome = new OME(document.getDocumentElement(), model);
    model.resolveReferences();
}

Example 10 with OMEModelImpl

use of ome.xml.model.OMEModelImpl in project bioformats by openmicroscopy.

the class InOutCurrentTest method testValidOMENode.

@Test
public void testValidOMENode() throws EnumerationException {
    model = new OMEModelImpl();
    // Read string XML in as a DOM tree and parse into the object hierarchy
    ome = new OMEXMLMetadataRoot(document.getDocumentElement(), model);
    model.resolveReferences();
    assertNotNull(ome);
    assertEquals(1, ome.sizeOfImageList());
}