Examples with ItemGroupBean org.akaza.openclinica.bean.submit.ItemGroupBean used on opensource projects

Example 16 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method show.

public void show(Integer itemDataId, List<PropertyBean> properties, RuleSetBean ruleSet) {
    ItemDataBean itemDataBeanA = (ItemDataBean) getItemDataDAO().findByPK(itemDataId);
    EventCRFBean eventCrfBeanA = (EventCRFBean) getEventCRFDAO().findByPK(itemDataBeanA.getEventCRFId());
    StudyEventBean studyEventBeanA = (StudyEventBean) getStudyEventDAO().findByPK(eventCrfBeanA.getStudyEventId());
    ItemGroupMetadataBean itemGroupMetadataBeanA = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemDataBeanA.getItemId(), eventCrfBeanA.getCRFVersionId());
    Boolean isGroupARepeating = isGroupRepeating(itemGroupMetadataBeanA);
    String itemGroupAOrdinal = getExpressionService().getGroupOrdninalCurated(ruleSet.getTarget().getValue());
    for (PropertyBean propertyBean : properties) {
        String oid = propertyBean.getOid();
        ItemOrItemGroupHolder itemOrItemGroup = getItemOrItemGroup(oid);
        // OID is an item
        if (itemOrItemGroup.getItemBean() != null) {
            ItemDataBean oidBasedItemData = getItemData(itemOrItemGroup.getItemBean(), eventCrfBeanA, itemDataBeanA.getOrdinal());
            ItemFormMetadataBean itemFormMetadataBean = getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemOrItemGroup.getItemBean().getId(), eventCrfBeanA.getCRFVersionId());
            DynamicsItemFormMetadataBean dynamicsMetadataBean = getDynamicsItemFormMetadataBean(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
            if (dynamicsMetadataBean == null) {
                showItem(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
            } else if (dynamicsMetadataBean != null && !dynamicsMetadataBean.isShowItem()) {
                dynamicsMetadataBean.setShowItem(true);
                getDynamicsItemFormMetadataDao().saveOrUpdate(dynamicsMetadataBean);
            }
        } else // OID is a group
        {
            logger.debug("found item group id 1 " + oid);
            ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            ArrayList sectionBeans = getSectionDAO().findAllByCRFVersionId(eventCrfBeanA.getCRFVersionId());
            for (int i = 0; i < sectionBeans.size(); i++) {
                SectionBean sectionBean = (SectionBean) sectionBeans.get(i);
                // System.out.println("found section " + sectionBean.getId());
                List<ItemGroupMetadataBean> itemGroupMetadataBeans = getItemGroupMetadataDAO().findMetaByGroupAndSection(itemGroupBean.getId(), eventCrfBeanA.getCRFVersionId(), sectionBean.getId());
                for (ItemGroupMetadataBean itemGroupMetadataBean : itemGroupMetadataBeans) {
                    if (itemGroupMetadataBean.getItemGroupId() == itemGroupBean.getId()) {
                        // System.out.println("found item group id 2 " + oid);
                        DynamicsItemGroupMetadataBean dynamicsGroupBean = getDynamicsItemGroupMetadataBean(itemGroupMetadataBean, eventCrfBeanA);
                        if (dynamicsGroupBean == null) {
                            showGroup(itemGroupMetadataBean, eventCrfBeanA);
                        } else if (dynamicsGroupBean != null && !dynamicsGroupBean.isShowGroup()) {
                            dynamicsGroupBean.setShowGroup(true);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        }
                    }
                }
            }
        }
    }
}

Example 17 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method hideNew.

public void hideNew(Integer itemDataId, List<PropertyBean> properties, UserAccountBean ub, RuleSetBean ruleSet) {
    ItemDataBean itemDataBeanA = (ItemDataBean) getItemDataDAO().findByPK(itemDataId);
    EventCRFBean eventCrfBeanA = (EventCRFBean) getEventCRFDAO().findByPK(itemDataBeanA.getEventCRFId());
    ItemGroupMetadataBean itemGroupMetadataBeanA = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemDataBeanA.getItemId(), eventCrfBeanA.getCRFVersionId());
    Boolean isGroupARepeating = isGroupRepeating(itemGroupMetadataBeanA);
    String itemGroupAOrdinal = getExpressionService().getGroupOrdninalCurated(ruleSet.getTarget().getValue());
    for (PropertyBean propertyBean : properties) {
        String oid = propertyBean.getOid();
        ItemOrItemGroupHolder itemOrItemGroup = getItemOrItemGroup(oid);
        // OID is an item
        if (itemOrItemGroup.getItemBean() != null) {
            String expression = getExpressionService().constructFullExpressionIfPartialProvided(propertyBean.getOid(), ruleSet.getTarget().getValue());
            ItemBean itemBeanB = getExpressionService().getItemBeanFromExpression(expression);
            ItemGroupBean itemGroupBeanB = getExpressionService().getItemGroupExpression(expression);
            EventCRFBean eventCrfBeanB = eventCrfBeanA;
            ItemGroupMetadataBean itemGroupMetadataBeanB = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemBeanB.getId(), eventCrfBeanB.getCRFVersionId());
            Boolean isGroupBRepeating = isGroupRepeating(itemGroupMetadataBeanB);
            String itemGroupBOrdinal = getExpressionService().getGroupOrdninalCurated(expression);
            List<ItemDataBean> itemDataBeans = new ArrayList<ItemDataBean>();
            // If A and B are both non repeating groups
            if (!isGroupARepeating && !isGroupBRepeating) {
                ItemDataBean oidBasedItemData = oneToOne(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, 1);
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is not repeating group & B is a repeating group with no index selected
            if (!isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
                List<ItemDataBean> oidBasedItemDatas = oneToMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub);
                itemDataBeans.addAll(oidBasedItemDatas);
            }
            // If A is not repeating group & B is a repeating group with index selected
            if (!isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is repeating group with index & B is a repeating group with index selected
            if (isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is repeating group with index & B is a repeating group with no index selected
            if (isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupAOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            for (ItemDataBean oidBasedItemData : itemDataBeans) {
                ItemFormMetadataBean itemFormMetadataBean = getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemOrItemGroup.getItemBean().getId(), eventCrfBeanA.getCRFVersionId());
                DynamicsItemFormMetadataBean dynamicsMetadataBean = getDynamicsItemFormMetadataBean(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
                if (dynamicsMetadataBean == null && oidBasedItemData.getValue().equals("")) {
                    hideNewItem(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
                } else if (dynamicsMetadataBean != null && dynamicsMetadataBean.isShowItem() && oidBasedItemData.getValue().equals("")) {
                    // tbh #5287: add an additional check here to see if it should be hidden
                    dynamicsMetadataBean.setShowItem(false);
                    getDynamicsItemFormMetadataDao().saveOrUpdate(dynamicsMetadataBean);
                }
            }
        } else // OID is a group
        {
            // ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            // below taken from showNew and reversed, tbh 07/2010
            logger.debug("found item group id 1 " + oid);
            ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            ArrayList sectionBeans = getSectionDAO().findAllByCRFVersionId(eventCrfBeanA.getCRFVersionId());
            for (int i = 0; i < sectionBeans.size(); i++) {
                SectionBean sectionBean = (SectionBean) sectionBeans.get(i);
                // System.out.println("found section " + sectionBean.getId());
                List<ItemGroupMetadataBean> itemGroupMetadataBeans = getItemGroupMetadataDAO().findMetaByGroupAndSection(itemGroupBean.getId(), eventCrfBeanA.getCRFVersionId(), sectionBean.getId());
                for (ItemGroupMetadataBean itemGroupMetadataBean : itemGroupMetadataBeans) {
                    if (itemGroupMetadataBean.getItemGroupId() == itemGroupBean.getId()) {
                        // System.out.println("found item group id 2 " + oid);
                        DynamicsItemGroupMetadataBean dynamicsGroupBean = getDynamicsItemGroupMetadataBean(itemGroupMetadataBean, eventCrfBeanA);
                        if (dynamicsGroupBean == null) {
                            hideGroup(itemGroupMetadataBean, eventCrfBeanA);
                        } else if (dynamicsGroupBean != null && !dynamicsGroupBean.isShowGroup()) {
                            dynamicsGroupBean.setShowGroup(false);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        // TODO is below required in hide?
                        } else if (eventCrfBeanA.getStage().equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
                            //setVersion(1); // version 1 = passed DDE
                            dynamicsGroupBean.setPassedDde(1);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        }
                    }
                }
            }
        }
    }
// tbh #5287: reset the check to make sure items that have been shown are not re-hidden
// resetItemCounter();
}

Example 18 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method insert.

private void insert(Integer itemDataId, List<PropertyBean> properties, UserAccountBean ub, RuleSetBean ruleSet, Status itemDataStatus, List<StratificationFactorBean> stratificationFactorBeans) {
    ItemDataBean itemDataBeanA = (ItemDataBean) getItemDataDAO().findByPK(itemDataId);
    EventCRFBean eventCrfBeanA = (EventCRFBean) getEventCRFDAO().findByPK(itemDataBeanA.getEventCRFId());
    StudyEventBean studyEventBeanA = (StudyEventBean) getStudyEventDAO().findByPK(eventCrfBeanA.getStudyEventId());
    ItemGroupMetadataBean itemGroupMetadataBeanA = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemDataBeanA.getItemId(), eventCrfBeanA.getCRFVersionId());
    Boolean isGroupARepeating = isGroupRepeating(itemGroupMetadataBeanA);
    String itemGroupAOrdinal = getExpressionService().getGroupOrdninalCurated(ruleSet.getTarget().getValue());
    for (PropertyBean propertyBean : properties) {
        String expression = getExpressionService().constructFullExpressionIfPartialProvided(propertyBean.getOid(), ruleSet.getTarget().getValue());
        ItemBean itemBeanB = getExpressionService().getItemBeanFromExpression(expression);
        ItemGroupBean itemGroupBeanB = getExpressionService().getItemGroupExpression(expression);
        ItemGroupMetadataBean itemGroupMetadataBeanB = null;
        Boolean isGroupBRepeating = null;
        String itemGroupBOrdinal = null;
        EventCRFBean eventCrfBeanB = null;
        Boolean isItemInSameForm = getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemBeanB.getId(), eventCrfBeanA.getCRFVersionId()).getId() != 0 ? true : false;
        // Item Does not below to same form
        if (!isItemInSameForm) {
            List<EventCRFBean> eventCrfs = getEventCRFDAO().findAllByStudyEventAndCrfOrCrfVersionOid(studyEventBeanA, getExpressionService().getCrfOid(expression));
            if (eventCrfs.size() == 0) {
                CRFVersionBean crfVersion = getExpressionService().getCRFVersionFromExpression(expression);
                CRFBean crf = getExpressionService().getCRFFromExpression(expression);
                int crfVersionId = 0;
                EventDefinitionCRFBean eventDefinitionCRFBean = getEventDefinitionCRfDAO().findByStudyEventDefinitionIdAndCRFId(studyEventBeanA.getStudyEventDefinitionId(), crf.getId());
                if (eventDefinitionCRFBean.getId() != 0) {
                    crfVersionId = crfVersion != null ? crfVersion.getId() : eventDefinitionCRFBean.getDefaultVersionId();
                }
                // Create new event crf
                eventCrfBeanB = eventCrfBeanA.copy();
                eventCrfBeanB.setStatus(Status.AVAILABLE);
                eventCrfBeanB.setId(0);
                eventCrfBeanB.setCRFVersionId(crfVersionId);
                eventCrfBeanB = (EventCRFBean) getEventCRFDAO().create(eventCrfBeanB);
            } else {
                eventCrfBeanB = eventCrfs.get(0);
            }
        }
        if (isItemInSameForm) {
            eventCrfBeanB = eventCrfBeanA;
        }
        itemGroupMetadataBeanB = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemBeanB.getId(), eventCrfBeanB.getCRFVersionId());
        isGroupBRepeating = isGroupRepeating(itemGroupMetadataBeanB);
        itemGroupBOrdinal = getExpressionService().getGroupOrdninalCurated(expression);
        // If A and B are both non repeating groups
        if (!isGroupARepeating && !isGroupBRepeating) {
            ItemDataBean oidBasedItemData = oneToOne(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, 1);
            oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
            if (itemDataStatus != null)
                oidBasedItemData.setStatus(itemDataStatus);
            getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
        }
        // If A is not repeating group & B is a repeating group with no index selected
        if (!isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
            List<ItemDataBean> oidBasedItemDatas = oneToMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub);
            for (ItemDataBean oidBasedItemData : oidBasedItemDatas) {
                oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
                if (itemDataStatus != null)
                    oidBasedItemData.setStatus(itemDataStatus);
                getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
            }
        }
        // If A is not repeating group & B is a repeating group with index selected
        if (!isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
            ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
            oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
            if (itemDataStatus != null)
                oidBasedItemData.setStatus(itemDataStatus);
            getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
        }
        // If A is repeating/ non repeating group & B is a repeating group with index selected as END
        if (isGroupBRepeating && itemGroupBOrdinal.equals("END")) {
            ItemDataBean oidBasedItemData = oneToEndMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub);
            oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
            if (itemDataStatus != null)
                oidBasedItemData.setStatus(itemDataStatus);
            getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
        }
        // If A is repeating group with index & B is a repeating group with index selected
        if (isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("") && !itemGroupBOrdinal.equals("END")) {
            ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
            oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
            if (itemDataStatus != null)
                oidBasedItemData.setStatus(itemDataStatus);
            getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
        }
        // If A is repeating group with index & B is a repeating group with no index selected
        if (isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
            ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupAOrdinal));
            oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA, stratificationFactorBeans));
            if (itemDataStatus != null)
                oidBasedItemData.setStatus(itemDataStatus);
            getItemDataDAO().updateValue(oidBasedItemData, getDateFormat(propertyBean));
        }
    //            // If A is repeating group with index & B is none-repeating group
    //            if (isGroupARepeating && !isGroupBRepeating ) {
    //                ItemDataBean oidBasedItemData =
    //                        oneToOne(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, 1);
    //
    //                oidBasedItemData.setValue(getValue(propertyBean, ruleSet, eventCrfBeanA));
    //                getItemDataDAO().updateValue(oidBasedItemData, "yyyy-MM-dd");
    //            }
    }
}

Example 19 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class ExpressionService method isExpressionValidOLD.

/**
     * Given a Complete Expression check business logic validity of each
     * component. Will throw OpenClinicaSystemException with correct
     * explanation. This might allow immediate communication of message to user
     * .
     * 
     * @param expression
     */
@Deprecated
public void isExpressionValidOLD(String expression) {
    StudyEventDefinitionBean studyEventDefinition = getStudyEventDefinitionFromExpression(expression);
    CRFBean crf = getCRFFromExpression(expression);
    if (studyEventDefinition == null || crf == null)
        throw new OpenClinicaSystemException("OCRERR_0020");
    EventDefinitionCRFBean eventDefinitionCrf = getEventDefinitionCRFDao().findByStudyEventDefinitionIdAndCRFId(this.expressionWrapper.getStudyBean(), studyEventDefinition.getId(), crf.getId());
    if (eventDefinitionCrf == null || eventDefinitionCrf.getId() == 0 || eventDefinitionCrf.getStatus() != Status.AVAILABLE)
        throw new OpenClinicaSystemException("OCRERR_0021");
    ItemGroupBean itemGroup = getItemGroupExpression(expression, crf);
    if (itemGroup == null)
        throw new OpenClinicaSystemException("OCRERR_0022");
    ItemBean item = getItemExpression(expression, itemGroup);
    if (item == null)
        throw new OpenClinicaSystemException("OCRERR_0023");
    logger.debug("Study Event Definition ID : " + studyEventDefinition.getId());
    logger.debug("Crf ID : " + crf.getId());
    logger.debug("Event Definition CRF ID : " + eventDefinitionCrf.getId());
    logger.debug("Item ID : " + item.getId());
}

Example 20 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class ExpressionService method getItemGroupExpression.

public ItemGroupBean getItemGroupExpression(String expression, CRFBean crf) {
    logger.debug("Expression : " + expression);
    logger.debug("Expression : " + getItemGroupOidFromExpression(expression));
    ItemGroupBean itemGroup = getItemGroupDao().findByOidAndCrf(getItemGroupOidFromExpression(expression), crf.getId());
    return itemGroup;
}