Examples with ItemGroupBean org.akaza.openclinica.bean.submit.ItemGroupBean used on opensource projects

Example 41 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method showNew.

public void showNew(Integer itemDataId, List<PropertyBean> properties, UserAccountBean ub, RuleSetBean ruleSet) {
    ItemDataBean itemDataBeanA = (ItemDataBean) getItemDataDAO().findByPK(itemDataId);
    EventCRFBean eventCrfBeanA = (EventCRFBean) getEventCRFDAO().findByPK(itemDataBeanA.getEventCRFId());
    ItemGroupMetadataBean itemGroupMetadataBeanA = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemDataBeanA.getItemId(), eventCrfBeanA.getCRFVersionId());
    Boolean isGroupARepeating = isGroupRepeating(itemGroupMetadataBeanA);
    String itemGroupAOrdinal = getExpressionService().getGroupOrdninalCurated(ruleSet.getTarget().getValue());
    for (PropertyBean propertyBean : properties) {
        String oid = propertyBean.getOid();
        ItemOrItemGroupHolder itemOrItemGroup = getItemOrItemGroup(oid);
        // OID is an item
        if (itemOrItemGroup.getItemBean() != null) {
            String expression = getExpressionService().constructFullExpressionIfPartialProvided(propertyBean.getOid(), ruleSet.getTarget().getValue());
            ItemBean itemBeanB = getExpressionService().getItemBeanFromExpression(expression);
            ItemGroupBean itemGroupBeanB = getExpressionService().getItemGroupExpression(expression);
            EventCRFBean eventCrfBeanB = eventCrfBeanA;
            ItemGroupMetadataBean itemGroupMetadataBeanB = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemBeanB.getId(), eventCrfBeanB.getCRFVersionId());
            Boolean isGroupBRepeating = isGroupRepeating(itemGroupMetadataBeanB);
            String itemGroupBOrdinal = getExpressionService().getGroupOrdninalCurated(expression);
            List<ItemDataBean> itemDataBeans = new ArrayList<ItemDataBean>();
            // If A and B are both non repeating groups
            if (!isGroupARepeating && !isGroupBRepeating) {
                ItemDataBean oidBasedItemData = oneToOne(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, 1);
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is not repeating group & B is a repeating group with no index selected
            if (!isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
                List<ItemDataBean> oidBasedItemDatas = oneToMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub);
                itemDataBeans.addAll(oidBasedItemDatas);
            }
            // If A is not repeating group & B is a repeating group with index selected
            if (!isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is repeating group with index & B is a repeating group with index selected
            if (isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is repeating group with index & B is a repeating group with no index selected
            if (isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupAOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            logger.debug("** found item data beans: " + itemDataBeans.toString());
            for (ItemDataBean oidBasedItemData : itemDataBeans) {
                ItemFormMetadataBean itemFormMetadataBean = getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemBeanB.getId(), eventCrfBeanB.getCRFVersionId());
                DynamicsItemFormMetadataBean dynamicsMetadataBean = getDynamicsItemFormMetadataBean(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
                if (dynamicsMetadataBean == null) {
                    showItem(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
                // itemsAlreadyShown.add(new Integer(oidBasedItemData.getId()));
                } else if (dynamicsMetadataBean != null && !dynamicsMetadataBean.isShowItem()) {
                    dynamicsMetadataBean.setShowItem(true);
                    getDynamicsItemFormMetadataDao().saveOrUpdate(dynamicsMetadataBean);
                // itemsAlreadyShown.add(new Integer(oidBasedItemData.getId()));
                } else if (eventCrfBeanA.getStage().equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
                    logger.debug("hit DDE here: idb " + oidBasedItemData.getId());
                    // need a guard clause to guarantee DDE
                    // if we get there, it means that we've hit DDE and the bean exists
                    //setVersion(1);// version 1 = passed DDE
                    dynamicsMetadataBean.setPassedDde(1);
                    getDynamicsItemFormMetadataDao().saveOrUpdate(dynamicsMetadataBean);
                }
            }
        } else // OID is a group
        {
            logger.debug("found item group id 1 " + oid);
            ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            ArrayList sectionBeans = getSectionDAO().findAllByCRFVersionId(eventCrfBeanA.getCRFVersionId());
            for (int i = 0; i < sectionBeans.size(); i++) {
                SectionBean sectionBean = (SectionBean) sectionBeans.get(i);
                // System.out.println("found section " + sectionBean.getId());
                List<ItemGroupMetadataBean> itemGroupMetadataBeans = getItemGroupMetadataDAO().findMetaByGroupAndSection(itemGroupBean.getId(), eventCrfBeanA.getCRFVersionId(), sectionBean.getId());
                for (ItemGroupMetadataBean itemGroupMetadataBean : itemGroupMetadataBeans) {
                    if (itemGroupMetadataBean.getItemGroupId() == itemGroupBean.getId()) {
                        // System.out.println("found item group id 2 " + oid);
                        DynamicsItemGroupMetadataBean dynamicsGroupBean = getDynamicsItemGroupMetadataBean(itemGroupMetadataBean, eventCrfBeanA);
                        if (dynamicsGroupBean == null) {
                            showGroup(itemGroupMetadataBean, eventCrfBeanA);
                        } else if (dynamicsGroupBean != null && !dynamicsGroupBean.isShowGroup()) {
                            dynamicsGroupBean.setShowGroup(true);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        } else if (eventCrfBeanA.getStage().equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
                            //setVersion(1); // version 1 = passed DDE
                            dynamicsGroupBean.setPassedDde(1);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        }
                    }
                }
            }
        }
    }
}

Example 42 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method getItemOrItemGroup.

private ItemOrItemGroupHolder getItemOrItemGroup(String oid) {
    String[] theOid = oid.split(ESCAPED_SEPERATOR);
    if (theOid.length == 2) {
        ItemGroupBean itemGroup = getItemGroupDAO().findByOid(theOid[0].trim());
        if (itemGroup != null) {
            ItemBean item = getItemDAO().findItemByGroupIdandItemOid(itemGroup.getId(), theOid[1].trim());
            if (item != null) {
                // System.out.println("returning two non nulls");
                return new ItemOrItemGroupHolder(item, itemGroup);
            }
        }
    }
    if (theOid.length == 1) {
        ItemGroupBean itemGroup = getItemGroupDAO().findByOid(oid.trim());
        if (itemGroup != null) {
            // System.out.println("returning item group not null");
            return new ItemOrItemGroupHolder(null, itemGroup);
        }
        List<ItemBean> items = getItemDAO().findByOid(oid.trim());
        ItemBean item = items.size() > 0 ? items.get(0) : null;
        if (item != null) {
            // System.out.println("returning item not null");
            return new ItemOrItemGroupHolder(item, null);
        }
    }
    return new ItemOrItemGroupHolder(null, null);
}

Example 43 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class BeanFactory method createGroupBeans.

/**
     * This method creates a List of DisplayItemGroupBeans. The
     * DisplayItemGroupBeans are listed in the order their items are defined in
     * the CRF spreadsheet. These beans include the items that are and are not
     * associated with a group. If an item is defined in a spreadsheet but does
     * not have a group label, that item is included in a DisplayItemGroupBean,
     * but not linked to any groups (i.e., that DisplayItemGroupBean has an
     * empty FormGroupBean object, with an empty String for a group label). For
     * example, if the spreadsheet defines two items first, but does not assign
     * them a group, then those items will make up the first
     * DisplayItemGroupBean. The spreadsheet then might define a <em>group</em>
     * of items followed by more items that are not part of a group. The former
     * items will represent the second DisplayItemGroupBean. The third
     * DisplayItemGroupBean will include the last collection of "orphaned"
     * items, accompanied by an empty FormGroupBean object.
     * 
     * @param itemsMap
     *            A Map containing rows of Item information from the
     *            spreadsheet. The items are in the order they were defined in
     *            the spreadsheet.
     * @param sectionLabel
     *            A String specifying the name of the section we are displaying.
     * @param groupsMap
     *            A Map containing rows of Group information from the
     *            spreadsheet.
     * @param crfName
     *            The name of the CRF, a String.
     * @see org.akaza.openclinica.bean.submit.ItemGroupBean
     * @return A List of DisplayItemGroupBeans
     */
public List<DisplayItemGroupBean> createGroupBeans(Map<Integer, Map<String, String>> itemsMap, Map<Integer, Map<String, String>> groupsMap, String sectionLabel, String crfName) {
    List<DisplayItemGroupBean> groupBeans = new ArrayList<DisplayItemGroupBean>();
    // properly build group beans
    if (groupsMap == null || groupsMap.isEmpty() || sectionLabel == null || sectionLabel.length() < 1 || sectionLabel.equalsIgnoreCase(UNGROUPED) || itemsMap == null || itemsMap.isEmpty()) {
        return groupBeans;
    }
    // First, separate the items into those only associated with this
    // section
    Map<String, String> innermap;
    List<DisplayItemBean> displayItems;
    Map.Entry<Integer, Map<String, String>> me;
    // This Map will hold the DisplayitemBeans that are associated with this
    // section
    Map<Integer, Map<String, String>> newMap = new HashMap<Integer, Map<String, String>>();
    String lab;
    for (Iterator<Map.Entry<Integer, Map<String, String>>> iter = itemsMap.entrySet().iterator(); iter.hasNext(); ) {
        me = iter.next();
        innermap = me.getValue();
        lab = innermap.get("section_label");
        if (lab != null && lab.equalsIgnoreCase(sectionLabel)) {
            newMap.put(me.getKey(), innermap);
        }
    }
    displayItems = this.createDisplayItemBeansFromMap(newMap, crfName);
    // Now, separate the DisplayItemBeans into those associated with groups,
    // and any others that do not have groups
    ItemGroupBean fgBean;
    DisplayItemGroupBean disFgBean;
    String latestGroupLabel;
    boolean validGroupFlag = false;
    int ordinal = 0;
    // the List.
    for (DisplayItemBean disBean : displayItems) {
        latestGroupLabel = disBean.getMetadata().getGroupLabel();
        // to a group. Store it in a FormGroupBean.
        if (latestGroupLabel != null && latestGroupLabel.length() > 0 && !latestGroupLabel.equalsIgnoreCase(UNGROUPED)) {
            // set this flag to true, indicating that the items being
            // processed now
            // are associated with a valid group
            validGroupFlag = true;
            // If lastGroupLabel is not yet stored in the List of
            // DisplayGroupBeans
            // then the beans associated with that label (DisplayGroupBeans
            // and
            // FormGroupBeans) have to be initialized.
            // Otherwise, just store the new displayitembean in the existing
            // FormGroupBean/DisplayFormGroupBean
            disFgBean = getGroupFromLabel(latestGroupLabel, groupBeans);
            // then a new one has to be initialized for this DisplayItemBean
            if (!(disFgBean.getItemGroupBean().getName().length() > 0)) {
                // Get FormGroupBean from group label
                fgBean = initFormGroupFromMap(latestGroupLabel, groupsMap);
                ordinal++;
                fgBean.getMeta().setOrdinal(ordinal);
                disFgBean.setItemGroupBean(fgBean);
                disFgBean.setGroupMetaBean(fgBean.getMeta());
                groupBeans.add(disFgBean);
            }
        } else {
            // if there is no group label associated with the
            // DisplayItemBean, then it
            // does not have a group; it is an "orphaned" item. In this
            // case, create a
            // DisplayFormGroup with a group label signified with an empty
            // string. This
            // "group" will hold the orphaned items. What if there are
            // orphaned items
            // in the spreadsheet that are divided by grouped items? Then
            // these orphaned
            // items have to be in separate DisplayFormGroups. To handle
            // this case, the
            // code checks the validGroupFlag boolean variable. if "true,"
            // indicating that
            // non-orphaned beans have just been processed, then create a
            // new
            // DisplayFormGroup for these orphaned items.
            boolean isFirst = isFirstUngroupedItem(groupBeans);
            if (validGroupFlag || isFirst) {
                disFgBean = new DisplayItemGroupBean();
                fgBean = new ItemGroupBean();
                ordinal++;
                fgBean.getMeta().setOrdinal(ordinal);
                fgBean.setName(UNGROUPED);
                disFgBean.setItemGroupBean(fgBean);
                disFgBean.setGroupMetaBean(fgBean.getMeta());
                groupBeans.add(disFgBean);
            } else {
                // The existing DisplayFormGroupBean for orphaned items
                // is the FormGroupBean containing the highest ordinal, and
                // with a group label
                // containing an empty string
                disFgBean = getLatestDisFormBeanForOrphanedItems(groupBeans);
            }
            validGroupFlag = false;
        }
        disFgBean.getItems().add(disBean);
    }
    return groupBeans;
}

Example 44 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class BeanFactory method createFormGroupBeanFromMap.

public ItemGroupBean createFormGroupBeanFromMap(Map<Integer, Map<String, String>> groupMap) {
    ItemGroupBean fBean = new ItemGroupBean();
    Map<String, String> beanMap;
    Map.Entry<Integer, Map<String, String>> me;
    NumberFormat numFormatter = NumberFormat.getInstance();
    numFormatter.setMaximumFractionDigits(0);
    String tempValue;
    for (Iterator<Map.Entry<Integer, Map<String, String>>> iter = groupMap.entrySet().iterator(); iter.hasNext(); ) {
        me = iter.next();
        beanMap = me.getValue();
        fBean.setName(beanMap.get("group_label"));
        tempValue = beanMap.get("group_repeat_number");
        // exception, but is still unacceptable
        if ("0.0".equalsIgnoreCase(tempValue)) {
            tempValue = "1";
        }
        try {
            fBean.getMeta().setRepeatNum(new Integer(numFormatter.format(Double.parseDouble(tempValue))));
        } catch (NumberFormatException nfe) {
            // BWP 10-13-07
            fBean.getMeta().setRepeatNum(1);
        }
        tempValue = beanMap.get("group_repeat_max");
        // exception, but is still unacceptable
        if ("0.0".equalsIgnoreCase(tempValue)) {
            tempValue = "22000";
        }
        try {
            fBean.getMeta().setRepeatMax(new Integer(numFormatter.format(Double.parseDouble(tempValue))));
        } catch (NumberFormatException nfe) {
            // BWP >>an arbitrarily large number allows infinite repeats; it
            // could also be -1
            fBean.getMeta().setRepeatMax(22000);
        }
        fBean.getMeta().setHeader(beanMap.get("group_header"));
    }
    return fBean;
}

Example 45 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class CRFVersionMetadataUtil method retrieveFormMetadata.

/**
     * Builds and returns an ArrayList of SectionBeans that comprise the metadata of a CRFVersion.
     */
public ArrayList<SectionBean> retrieveFormMetadata(FormLayoutBean formLayout) throws Exception {
    ItemDAO idao = new ItemDAO(dataSource);
    ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(dataSource);
    // tbh, 102007
    SectionDAO sdao = new SectionDAO(dataSource);
    ItemGroupDAO igdao = new ItemGroupDAO(dataSource);
    ItemGroupMetadataDAO igmdao = new ItemGroupMetadataDAO(dataSource);
    ArrayList sections = (ArrayList) sdao.findByLayoutId(formLayout.getId());
    HashMap versionMap = new HashMap();
    for (int i = 0; i < sections.size(); i++) {
        SectionBean section = (SectionBean) sections.get(i);
        versionMap.put(new Integer(section.getId()), section.getItems());
        // YW 08-21-2007, add group metadata
        ArrayList<ItemGroupBean> igs = (ArrayList<ItemGroupBean>) igdao.findGroupByLayoutId(formLayout.getId());
        for (int j = 0; j < igs.size(); ++j) {
            ArrayList<ItemGroupMetadataBean> igms = (ArrayList<ItemGroupMetadataBean>) igmdao.findMetaByGroupAndSection(igs.get(j).getId(), section.getCRFVersionId(), section.getId());
            if (!igms.isEmpty()) {
                // Note, the following logic has been adapted here -
                // "for a given crf version,
                // all the items in the same group have the same group
                // metadata
                // so we can get one of them and set metadata for the
                // group"
                igs.get(j).setMeta(igms.get(0));
                igs.get(j).setItemGroupMetaBeans(igms);
            }
        }
        ((SectionBean) sections.get(i)).setGroups(igs);
    // YW >>
    }
    ArrayList items = idao.findAllItemsByLayoutId(formLayout.getId());
    // then different query will be used
    if (igmdao.versionIncluded(formLayout.getId())) {
        for (int i = 0; i < items.size(); i++) {
            ItemBean item = (ItemBean) items.get(i);
            ItemFormMetadataBean ifm = ifmdao.findByItemIdAndFormLayoutId(item.getId(), formLayout.getId());
            item.setItemMeta(ifm);
            // logger.info("option******" +
            // ifm.getResponseSet().getOptions().size());
            ArrayList its = (ArrayList) versionMap.get(new Integer(ifm.getSectionId()));
            its.add(item);
        }
    } else {
        for (int i = 0; i < items.size(); i++) {
            ItemBean item = (ItemBean) items.get(i);
            ItemFormMetadataBean ifm = ifmdao.findByItemIdAndFormLayoutIdNotInIGM(item.getId(), formLayout.getId());
            item.setItemMeta(ifm);
            // logger.info("option******" +
            // ifm.getResponseSet().getOptions().size());
            ArrayList its = (ArrayList) versionMap.get(new Integer(ifm.getSectionId()));
            its.add(item);
        }
    }
    for (int i = 0; i < sections.size(); i++) {
        SectionBean section = (SectionBean) sections.get(i);
        section.setItems((ArrayList) versionMap.get(new Integer(section.getId())));
    }
    return sections;
}