use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.
the class BeanFactory method addPreviewGroupsInfo.
public List<SectionBean> addPreviewGroupsInfo(List<SectionBean> secsList, Map<Integer, Map<String, String>> groupsMap) {
if (secsList == null || secsList.isEmpty()) {
return secsList;
}
ItemGroupBean groupBean = new ItemGroupBean();
Map<String, String> groupValues;
String groupLabel = "";
// Find out which groups belong with which section
for (Entry<Integer, Map<String, String>> entry : groupsMap.entrySet()) {
groupValues = entry.getValue();
groupLabel = groupValues.get("group_label");
groupBean = this.initFormGroupFromMap(groupLabel, groupsMap);
for (SectionBean secBean : secsList) {
if (sectionHasGroup(groupLabel, secBean)) {
secBean.getGroups().add(groupBean);
}
}
}
return secsList;
}
use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.
the class DataEntryServlet method reshuffleReasonForChangeHashAndDiscrepancyNotes.
private void reshuffleReasonForChangeHashAndDiscrepancyNotes(List<DisplayItemWithGroupBean> allItems, HttpServletRequest request, EventCRFBean ecb) {
int manualRows = 0;
HashMap<String, Boolean> noteSubmitted = (HashMap<String, Boolean>) request.getSession().getAttribute(DataEntryServlet.NOTE_SUBMITTED);
FormDiscrepancyNotes noteTree = (FormDiscrepancyNotes) request.getSession().getAttribute(CreateDiscrepancyNoteServlet.FLAG_DISCREPANCY_RFC);
ArrayList<DiscrepancyNoteBean> fieldNote = null;
String intendedKey = null;
String replacementKey = null;
if ((noteSubmitted == null || noteSubmitted.size() < 1) && (noteTree == null || noteTree.getFieldNotes() == null || noteTree.getFieldNotes().size() < 1)) {
return;
}
for (int i = 0; i < allItems.size(); i++) {
DisplayItemWithGroupBean diwb = allItems.get(i);
if (diwb.isInGroup()) {
List<DisplayItemGroupBean> dgbs = diwb.getItemGroups();
for (int j = 0; j < dgbs.size(); j++) {
DisplayItemGroupBean digb = dgbs.get(j);
ItemGroupBean igb = digb.getItemGroupBean();
List<DisplayItemBean> dibs = digb.getItems();
if (j == 0) {
// first repeat
for (DisplayItemBean dib : dibs) {
intendedKey = ecb.getId() + "_" + digb.getInputId() + getInputName(dib);
replacementKey = ecb.getId() + "_" + digb.getItemGroupBean().getOid() + "_" + j + getInputName(dib);
if (!replacementKey.equals(intendedKey)) {
if (noteSubmitted.containsKey(intendedKey)) {
noteSubmitted.put(replacementKey, Boolean.TRUE);
noteSubmitted.remove(intendedKey);
}
if (noteTree.getNotes(intendedKey) != null) {
fieldNote = (ArrayList<DiscrepancyNoteBean>) noteTree.getNotes(intendedKey);
if (fieldNote != null && fieldNote.size() > 0) {
noteTree.getFieldNotes().put(replacementKey, fieldNote);
noteTree.getFieldNotes().remove(intendedKey);
}
//not changing here because this hash should not be used
// noteTree.addIdNote(note.getEntityId(), field);
//
}
}
}
} else {
// everything in between
manualRows++;
for (DisplayItemBean dib : dibs) {
intendedKey = ecb.getId() + "_" + digb.getInputId() + getInputName(dib);
replacementKey = ecb.getId() + "_" + digb.getItemGroupBean().getOid() + "_manual" + (j) + getInputName(dib);
if (!replacementKey.equals(intendedKey)) {
if (noteSubmitted != null && noteSubmitted.containsKey(intendedKey)) {
noteSubmitted.put(replacementKey, Boolean.TRUE);
noteSubmitted.remove(intendedKey);
}
if (noteTree != null && noteTree.getNotes(intendedKey) != null) {
fieldNote = (ArrayList<DiscrepancyNoteBean>) noteTree.getNotes(intendedKey);
if (fieldNote != null && fieldNote.size() > 0) {
noteTree.getFieldNotes().put(replacementKey, fieldNote);
noteTree.getFieldNotes().remove(intendedKey);
}
}
}
}
}
LOGGER.debug("removing: " + intendedKey + " and replacing it with " + replacementKey);
}
}
}
request.getSession().setAttribute(DataEntryServlet.NOTE_SUBMITTED, noteSubmitted);
}
use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.
the class ImportCRFDataService method lookupValidationErrors.
public List<DisplayItemBeanWrapper> lookupValidationErrors(HttpServletRequest request, ODMContainer odmContainer, UserAccountBean ub, HashMap<String, String> totalValidationErrors, HashMap<String, String> hardValidationErrors, ArrayList<Integer> permittedEventCRFIds) throws OpenClinicaException {
DisplayItemBeanWrapper displayItemBeanWrapper = null;
HashMap validationErrors = new HashMap();
List<DisplayItemBeanWrapper> wrappers = new ArrayList<DisplayItemBeanWrapper>();
ImportHelper importHelper = new ImportHelper();
FormDiscrepancyNotes discNotes = new FormDiscrepancyNotes();
DiscrepancyValidator discValidator = new DiscrepancyValidator(request, discNotes);
// create a second Validator, this one for hard edit checks
HashMap<String, String> hardValidator = new HashMap<String, String>();
StudyEventDAO studyEventDAO = new StudyEventDAO(ds);
StudyDAO studyDAO = new StudyDAO(ds);
StudyBean studyBean = studyDAO.findByOid(odmContainer.getCrfDataPostImportContainer().getStudyOID());
StudySubjectDAO studySubjectDAO = new StudySubjectDAO(ds);
StudyEventDefinitionDAO sedDao = new StudyEventDefinitionDAO(ds);
HashMap<String, ItemDataBean> blankCheck = new HashMap<String, ItemDataBean>();
String hardValidatorErrorMsgs = "";
ArrayList<SubjectDataBean> subjectDataBeans = odmContainer.getCrfDataPostImportContainer().getSubjectData();
int totalEventCRFCount = 0;
int totalItemDataBeanCount = 0;
for (SubjectDataBean subjectDataBean : subjectDataBeans) {
ArrayList<DisplayItemBean> displayItemBeans = new ArrayList<DisplayItemBean>();
logger.debug("iterating through subject data beans: found " + subjectDataBean.getSubjectOID());
ArrayList<StudyEventDataBean> studyEventDataBeans = subjectDataBean.getStudyEventData();
totalEventCRFCount += studyEventDataBeans.size();
StudySubjectBean studySubjectBean = studySubjectDAO.findByOidAndStudy(subjectDataBean.getSubjectOID(), studyBean.getId());
for (StudyEventDataBean studyEventDataBean : studyEventDataBeans) {
int parentStudyId = studyBean.getParentStudyId();
StudyEventDefinitionBean sedBean = sedDao.findByOidAndStudy(studyEventDataBean.getStudyEventOID(), studyBean.getId(), parentStudyId);
ArrayList<FormDataBean> formDataBeans = studyEventDataBean.getFormData();
logger.debug("iterating through study event data beans: found " + studyEventDataBean.getStudyEventOID());
int ordinal = 1;
try {
ordinal = new Integer(studyEventDataBean.getStudyEventRepeatKey()).intValue();
} catch (Exception e) {
// trying to catch NPEs, because tags can be without the
// repeat key
}
StudyEventBean studyEvent = (StudyEventBean) studyEventDAO.findByStudySubjectIdAndDefinitionIdAndOrdinal(studySubjectBean.getId(), sedBean.getId(), ordinal);
displayItemBeans = new ArrayList<DisplayItemBean>();
for (FormDataBean formDataBean : formDataBeans) {
Map<String, Integer> groupMaxOrdinals = new HashMap<String, Integer>();
displayItemBeanWrapper = null;
CRFVersionDAO crfVersionDAO = new CRFVersionDAO(ds);
EventCRFDAO eventCRFDAO = new EventCRFDAO(ds);
ArrayList<CRFVersionBean> crfVersionBeans = crfVersionDAO.findAllByOid(formDataBean.getFormOID());
ArrayList<ImportItemGroupDataBean> itemGroupDataBeans = formDataBean.getItemGroupData();
if ((crfVersionBeans == null) || (crfVersionBeans.size() == 0)) {
MessageFormat mf = new MessageFormat("");
mf.applyPattern(respage.getString("your_crf_version_oid_did_not_generate"));
Object[] arguments = { formDataBean.getFormOID() };
throw new OpenClinicaException(mf.format(arguments), "");
}
CRFVersionBean crfVersion = crfVersionBeans.get(0);
// if you have a mispelled form oid you get an error here
// need to error out gracefully and post an error
logger.debug("iterating through form beans: found " + crfVersion.getOid());
// may be the point where we cut off item groups etc and
// instead work on sections
EventCRFBean eventCRFBean = eventCRFDAO.findByEventCrfVersion(studyEvent, crfVersion);
EventDefinitionCRFDAO eventDefinitionCRFDAO = new EventDefinitionCRFDAO(ds);
EventDefinitionCRFBean eventDefinitionCRF = eventDefinitionCRFDAO.findByStudyEventIdAndCRFVersionId(studyBean, studyEvent.getId(), crfVersion.getId());
if (eventCRFBean != null) {
if (permittedEventCRFIds.contains(new Integer(eventCRFBean.getId()))) {
for (ImportItemGroupDataBean itemGroupDataBean : itemGroupDataBeans) {
groupMaxOrdinals.put(itemGroupDataBean.getItemGroupOID(), 1);
}
// correctness, tbh
for (ImportItemGroupDataBean itemGroupDataBean : itemGroupDataBeans) {
ArrayList<ItemBean> blankCheckItems = new ArrayList<ItemBean>();
ArrayList<ImportItemDataBean> itemDataBeans = itemGroupDataBean.getItemData();
logger.debug("iterating through group beans: " + itemGroupDataBean.getItemGroupOID());
// put a checker in here
ItemGroupDAO itemGroupDAO = new ItemGroupDAO(ds);
ItemGroupBean testBean = itemGroupDAO.findByOid(itemGroupDataBean.getItemGroupOID());
if (testBean == null) {
// TODO i18n of message
MessageFormat mf = new MessageFormat("");
mf.applyPattern(respage.getString("your_item_group_oid_for_form_oid"));
Object[] arguments = { itemGroupDataBean.getItemGroupOID(), formDataBean.getFormOID() };
throw new OpenClinicaException(mf.format(arguments), "");
}
totalItemDataBeanCount += itemDataBeans.size();
for (ImportItemDataBean importItemDataBean : itemDataBeans) {
logger.debug(" iterating through item data beans: " + importItemDataBean.getItemOID());
ItemDAO itemDAO = new ItemDAO(ds);
ItemFormMetadataDAO itemFormMetadataDAO = new ItemFormMetadataDAO(ds);
List<ItemBean> itemBeans = itemDAO.findByOid(importItemDataBean.getItemOID());
if (!itemBeans.isEmpty()) {
ItemBean itemBean = itemBeans.get(0);
logger.debug(" found " + itemBean.getName());
// throw a null pointer? hopefully not if its been checked...
DisplayItemBean displayItemBean = new DisplayItemBean();
displayItemBean.setItem(itemBean);
ArrayList<ItemFormMetadataBean> metadataBeans = itemFormMetadataDAO.findAllByItemId(itemBean.getId());
logger.debug(" found metadata item beans: " + metadataBeans.size());
int groupOrdinal = 1;
if (itemGroupDataBean.getItemGroupRepeatKey() != null) {
try {
groupOrdinal = new Integer(itemGroupDataBean.getItemGroupRepeatKey()).intValue();
if (groupOrdinal > groupMaxOrdinals.get(itemGroupDataBean.getItemGroupOID())) {
groupMaxOrdinals.put(itemGroupDataBean.getItemGroupOID(), groupOrdinal);
}
} catch (Exception e) {
// do nothing here currently, we are
// looking for a number format
// exception
// from the above.
logger.debug("found npe for group ordinals, line 344!");
}
}
ItemDataBean itemDataBean = createItemDataBean(itemBean, eventCRFBean, importItemDataBean.getValue(), ub, groupOrdinal);
blankCheckItems.add(itemBean);
String newKey = groupOrdinal + "_" + itemGroupDataBean.getItemGroupOID() + "_" + itemBean.getOid() + "_" + subjectDataBean.getSubjectOID();
blankCheck.put(newKey, itemDataBean);
logger.info("adding " + newKey + " to blank checks");
if (!metadataBeans.isEmpty()) {
ItemFormMetadataBean metadataBean = metadataBeans.get(0);
// also possible nullpointer
displayItemBean.setData(itemDataBean);
displayItemBean.setMetadata(metadataBean);
displayItemBean.setEventDefinitionCRF(eventDefinitionCRF);
String eventCRFRepeatKey = studyEventDataBean.getStudyEventRepeatKey();
// if you do indeed leave off this in the XML it will pass but return 'null'
// tbh
attachValidator(displayItemBean, importHelper, discValidator, hardValidator, request, eventCRFRepeatKey, studySubjectBean.getOid());
displayItemBeans.add(displayItemBean);
} else {
MessageFormat mf = new MessageFormat("");
mf.applyPattern(respage.getString("no_metadata_could_be_found"));
Object[] arguments = { importItemDataBean.getItemOID() };
throw new OpenClinicaException(mf.format(arguments), "");
}
} else {
// report the error there
MessageFormat mf = new MessageFormat("");
mf.applyPattern(respage.getString("no_item_could_be_found"));
Object[] arguments = { importItemDataBean.getItemOID() };
throw new OpenClinicaException(mf.format(arguments), "");
}
}
// end item data beans
logger.debug(".. found blank check: " + blankCheck.toString());
for (int i = 1; i <= groupMaxOrdinals.get(itemGroupDataBean.getItemGroupOID()); i++) {
for (ItemBean itemBean : blankCheckItems) {
String newKey = i + "_" + itemGroupDataBean.getItemGroupOID() + "_" + itemBean.getOid() + "_" + subjectDataBean.getSubjectOID();
if (blankCheck.get(newKey) == null) {
// if it already exists, Do Not Add It.
ItemDataBean itemDataCheck = getItemDataDao().findByItemIdAndEventCRFIdAndOrdinal(itemBean.getId(), eventCRFBean.getId(), i);
logger.debug("found item data bean id: " + itemDataCheck.getId() + " for ordinal " + i);
if (itemDataCheck.getId() == 0) {
ItemDataBean blank = createItemDataBean(itemBean, eventCRFBean, "", ub, i);
DisplayItemBean displayItemBean = new DisplayItemBean();
displayItemBean.setItem(itemBean);
displayItemBean.setData(blank);
// displayItemBean.setMetadata(metadataBean);
// set event def crf?
displayItemBean.setEventDefinitionCRF(eventDefinitionCRF);
String eventCRFRepeatKey = studyEventDataBean.getStudyEventRepeatKey();
// if you do indeed leave off this in the XML it will pass but return
// 'null'
// tbh
displayItemBeans.add(displayItemBean);
logger.debug("... adding display item bean");
}
}
logger.debug("found a blank at " + i + ", adding " + blankCheckItems.size() + " blank items");
}
}
// << tbh #5548
blankCheckItems = new ArrayList<ItemBean>();
}
// end item group data beans
}
// matches if on permittedCRFIDs
CRFDAO crfDAO = new CRFDAO(ds);
CRFBean crfBean = crfDAO.findByVersionId(crfVersion.getCrfId());
// seems like an extravagance, but is not contained in crf
// version or event crf bean
validationErrors = discValidator.validate();
// totalValidationErrors.addAll(validationErrors);
for (Object errorKey : validationErrors.keySet()) {
// JN: to avoid duplicate errors
if (!totalValidationErrors.containsKey(errorKey.toString()))
totalValidationErrors.put(errorKey.toString(), validationErrors.get(errorKey).toString());
// assuming that this will be put back in to the core
// method's hashmap, updating statically, tbh 06/2008
logger.debug("+++ adding " + errorKey.toString());
}
logger.debug("-- hard validation checks: --");
for (Object errorKey : hardValidator.keySet()) {
logger.debug(errorKey.toString() + " -- " + hardValidator.get(errorKey));
hardValidationErrors.put(errorKey.toString(), hardValidator.get(errorKey));
// updating here 'statically' tbh 06/2008
hardValidatorErrorMsgs += hardValidator.get(errorKey) + "<br/><br/>";
}
String studyEventId = studyEvent.getId() + "";
String crfVersionId = crfVersion.getId() + "";
logger.debug("creation of wrapper: original count of display item beans " + displayItemBeans.size() + ", count of item data beans " + totalItemDataBeanCount + " count of validation errors " + validationErrors.size() + " count of study subjects " + subjectDataBeans.size() + " count of event crfs " + totalEventCRFCount + " count of hard error checks " + hardValidator.size());
// check if we need to overwrite
DataEntryStage dataEntryStage = eventCRFBean.getStage();
Status eventCRFStatus = eventCRFBean.getStatus();
boolean overwrite = false;
// //JN: Commenting out the following 2 lines, coz the prompt should come in the cases on
if (// eventCRFStatus.equals(Status.UNAVAILABLE) ||
dataEntryStage.equals(DataEntryStage.DOUBLE_DATA_ENTRY_COMPLETE) || dataEntryStage.equals(DataEntryStage.INITIAL_DATA_ENTRY_COMPLETE) || dataEntryStage.equals(DataEntryStage.INITIAL_DATA_ENTRY) || dataEntryStage.equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
overwrite = true;
}
// << tbh, adding extra statuses to prevent appending, 06/2009
// SummaryStatsBean ssBean = new SummaryStatsBean();
// ssBean.setDiscNoteCount(totalValidationErrors);
// ssBean.setEventCrfCount(totalEventCRFCount);
// ssBean.setStudySubjectCount(subjectDataBeans.size());
// // add other stats here, tbh
// not working here, need to do it in a different method,
// tbh
// summary stats added tbh 05/2008
// JN: Changed from validationErrors to totalValidationErrors to create discrepancy notes for
// all
// the
displayItemBeanWrapper = new DisplayItemBeanWrapper(displayItemBeans, true, overwrite, validationErrors, studyEventId, crfVersionId, studyEventDataBean.getStudyEventOID(), studySubjectBean.getLabel(), eventCRFBean.getCreatedDate(), crfBean.getName(), crfVersion.getName(), studySubjectBean.getOid(), studyEventDataBean.getStudyEventRepeatKey());
// JN: Commenting out the following code, since we shouldn't re-initialize at this point, as
// validationErrors would get overwritten and the
// older errors will be overriden. Moving it after the form.
// Removing the comments for now, since it seems to be creating duplicate Discrepancy Notes.
validationErrors = new HashMap();
discValidator = new DiscrepancyValidator(request, discNotes);
// reset to allow for new errors...
}
}
// discValidator = new DiscrepancyValidator(request, discNotes);
if (displayItemBeanWrapper != null && displayItemBeans.size() > 0)
wrappers.add(displayItemBeanWrapper);
}
// after study events
// remove repeats here? remove them below by only forwarding the
// first
// each wrapper represents an Event CRF and a Form, but we don't
// have all events for all forms
// need to not add a wrapper for every event + form combination,
// but instead for every event + form combination which is present
// look at the hack below and see what happens
}
// thrown, tbh 06/2008
if (!hardValidator.isEmpty()) {
// throw new OpenClinicaException(hardValidatorErrorMsgs, "");
}
return wrappers;
}
use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.
the class ResolveDiscrepancyServlet method prepareRequestForResolution.
public boolean prepareRequestForResolution(HttpServletRequest request, DataSource ds, StudyBean currentStudy, DiscrepancyNoteBean note, boolean isCompleted) throws Exception {
String entityType = note.getEntityType().toLowerCase();
int id = note.getEntityId();
if ("subject".equalsIgnoreCase(entityType)) {
StudySubjectDAO ssdao = new StudySubjectDAO(ds);
StudySubjectBean ssb = ssdao.findBySubjectIdAndStudy(id, currentStudy);
request.setAttribute("action", "show");
request.setAttribute("id", String.valueOf(note.getEntityId()));
request.setAttribute("studySubId", String.valueOf(ssb.getId()));
} else if ("studysub".equalsIgnoreCase(entityType)) {
request.setAttribute("action", "show");
request.setAttribute("id", String.valueOf(note.getEntityId()));
} else if ("eventcrf".equalsIgnoreCase(entityType)) {
request.setAttribute("editInterview", "1");
EventCRFDAO ecdao = new EventCRFDAO(ds);
EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(id);
request.setAttribute(TableOfContentsServlet.INPUT_EVENT_CRF_BEAN, ecb);
// If the request is passed along to ViewSectionDataEntryServlet,
// that code needs
// an event crf id; the (ecb.getId()+"") is necessary because
// FormProcessor throws
// a ClassCastException without the casting to a String
request.setAttribute(ViewSectionDataEntryServlet.EVENT_CRF_ID, ecb.getId() + "");
} else if ("studyevent".equalsIgnoreCase(entityType)) {
StudyEventDAO sedao = new StudyEventDAO(ds);
StudyEventBean seb = (StudyEventBean) sedao.findByPK(id);
request.setAttribute(EnterDataForStudyEventServlet.INPUT_EVENT_ID, String.valueOf(id));
request.setAttribute(UpdateStudyEventServlet.EVENT_ID, String.valueOf(id));
request.setAttribute(UpdateStudyEventServlet.STUDY_SUBJECT_ID, String.valueOf(seb.getStudySubjectId()));
} else // this is for item data
if ("itemdata".equalsIgnoreCase(entityType)) {
ItemDataDAO iddao = new ItemDataDAO(ds);
ItemDAO idao = new ItemDAO(ds);
ItemDataBean idb = (ItemDataBean) iddao.findByPK(id);
ItemBean item = (ItemBean) idao.findByPK(idb.getItemId());
ItemGroupMetadataDAO igmdao = new ItemGroupMetadataDAO<>(ds);
EventCRFDAO ecdao = new EventCRFDAO(ds);
EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(idb.getEventCRFId());
FormLayoutDAO fldao = new FormLayoutDAO(ds);
FormLayoutBean formLayout = (FormLayoutBean) fldao.findByPK(ecb.getFormLayoutId());
StudyEventDAO sedao = new StudyEventDAO(ds);
StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
StudySubjectBean ssb = (StudySubjectBean) ssdao.findByPK(ecb.getStudySubjectId());
ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(ds);
ItemFormMetadataBean ifmb = ifmdao.findByItemIdAndCRFVersionId(idb.getItemId(), ecb.getFormLayoutId());
ItemGroupMetadataBean igmBean = (ItemGroupMetadataBean) igmdao.findByItemAndCrfVersion(idb.getItemId(), ecb.getCRFVersionId());
ItemGroupDAO igdao = new ItemGroupDAO<>(ds);
ItemGroupBean igBean = (ItemGroupBean) igdao.findByPK(igmBean.getItemGroupId());
int repeatOrdinal = idb.getOrdinal();
ItemDataBean idata = null;
if (idb != null && idb.isDeleted()) {
return false;
}
if (igmBean.isRepeatingGroup() && repeatOrdinal > 1) {
List<ItemGroupMetadataBean> igms = igmdao.findMetaByGroupAndCrfVersion(igBean.getId(), ecb.getCRFVersionId());
for (int i = 0; i < idb.getOrdinal(); i++) {
for (ItemGroupMetadataBean igm : igms) {
idata = iddao.findByItemIdAndEventCRFIdAndOrdinal(igm.getItemId(), ecb.getId(), i + 1);
if (idata != null && idata.isDeleted()) {
repeatOrdinal--;
break;
}
}
}
}
EnketoUrlService enketoUrlService = (EnketoUrlService) SpringServletAccess.getApplicationContext(context).getBean("enketoUrlService");
StudyEventBean seb = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
// Cache the subject context for use during xform submission
PFormCache cache = PFormCache.getInstance(context);
PFormCacheSubjectContextEntry subjectContext = new PFormCacheSubjectContextEntry();
subjectContext.setStudySubjectOid(ssb.getOid());
subjectContext.setStudyEventDefinitionId(seb.getStudyEventDefinitionId());
subjectContext.setOrdinal(seb.getSampleOrdinal());
subjectContext.setFormLayoutOid(formLayout.getOid());
subjectContext.setUserAccountId(ub.getId());
subjectContext.setItemName(item.getName() + COMMENT);
subjectContext.setItemRepeatOrdinal(repeatOrdinal);
subjectContext.setItemInRepeatingGroup(igmBean.isRepeatingGroup());
subjectContext.setItemRepeatGroupName(igBean.getLayoutGroupPath());
String contextHash = cache.putSubjectContext(subjectContext);
String formUrl = null;
if (ecb.getId() > 0) {
formUrl = enketoUrlService.getEditUrl(contextHash, subjectContext, currentStudy.getOid(), null, null, QUERY_FLAVOR);
} else {
formUrl = enketoUrlService.getInitialDataEntryUrl(contextHash, subjectContext, currentStudy.getOid(), QUERY_FLAVOR);
}
int hashIndex = formUrl.lastIndexOf("#");
String part1 = formUrl;
String part2 = "";
if (hashIndex != -1) {
part1 = formUrl.substring(0, hashIndex);
part2 = formUrl.substring(hashIndex);
}
request.setAttribute(EnketoFormServlet.FORM_URL1, part1);
request.setAttribute(EnketoFormServlet.FORM_URL2, part2);
}
return true;
}
use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.
the class PrintEventCRFServlet method processRequest.
@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
FormProcessor fp = new FormProcessor(request);
StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
// The PrintDataEntry servlet handles this parameter
int eventCRFId = fp.getInt("ecId");
//JN:The following were the the global variables, moved as local.
EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
StudyEventDefinitionDAO sedao = new StudyEventDefinitionDAO(getDataSource());
int defId = fp.getInt("id", true);
boolean isSubmitted = false;
ArrayList<SectionBean> allSectionBeans;
if (defId == 0) {
addPageMessage(respage.getString("please_choose_a_definition_to_view"), request);
forwardPage(Page.LIST_DEFINITION_SERVLET, request, response);
} else {
// definition id
StudyEventDefinitionBean sed = (StudyEventDefinitionBean) sedao.findByPK(defId);
EventDefinitionCRFDAO edao = new EventDefinitionCRFDAO(getDataSource());
ArrayList eventDefinitionCRFs = (ArrayList) edao.findAllByDefinition(defId);
CRFVersionDAO cvdao = new CRFVersionDAO(getDataSource());
CRFDAO cdao = new CRFDAO(getDataSource());
ArrayList defaultVersions = new ArrayList();
for (int i = 0; i < eventDefinitionCRFs.size(); i++) {
EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
ArrayList versions = (ArrayList) cvdao.findAllByCRF(edc.getCrfId());
edc.setVersions(versions);
CRFBean crf = (CRFBean) cdao.findByPK(edc.getCrfId());
// edc.setCrfLabel(crf.getLabel());
edc.setCrfName(crf.getName());
// to show/hide edit action on jsp page
if (crf.getStatus().equals(Status.AVAILABLE)) {
edc.setOwner(crf.getOwner());
}
CRFVersionBean defaultVersion = (CRFVersionBean) cvdao.findByPK(edc.getDefaultVersionId());
//There could be separate EventDefinitionCRF objects with same default version id.
if (defaultVersions.contains(defaultVersion)) {
continue;
}
edc.setDefaultVersionName(defaultVersion.getName());
if (edc.getStatus().isAvailable()) {
defaultVersions.add(defaultVersion);
}
}
// Whether IE6 or IE7 is involved
String isIE = fp.getString("ie");
if ("y".equalsIgnoreCase(isIE)) {
request.setAttribute("isInternetExplorer", "true");
}
int eventDefinitionCRFId = fp.getInt("eventDefinitionCRFId");
// EventDefinitionCRFDao findByStudyEventIdAndCRFVersionId(int
// studyEventId, int crfVersionId)
SectionDAO sdao = new SectionDAO(getDataSource());
CRFVersionDAO crfVersionDAO = new CRFVersionDAO(getDataSource());
CRFDAO crfDao = new CRFDAO(getDataSource());
ArrayList printCrfBeans = new ArrayList();
for (Iterator it = defaultVersions.iterator(); it.hasNext(); ) {
allSectionBeans = new ArrayList<SectionBean>();
ArrayList sectionBeans = new ArrayList();
CRFVersionBean crfVersionBean = (CRFVersionBean) it.next();
// The existing application doesn't print null values, even if they are
// defined in the event definition
// int crfVersionId = fp.getInt("id");
// BWP 2/7/2008>> Find out if the CRF has grouped tables, and if so,
// use
// that dedicated JSP
ItemGroupDAO itemGroupDao = new ItemGroupDAO(getDataSource());
// Find truely grouped tables, not groups with a name of 'Ungrouped'
List<ItemGroupBean> itemGroupBeans = itemGroupDao.findOnlyGroupsByCRFVersionID(crfVersionBean.getId());
CRFBean crfBean = crfDao.findByVersionId(crfVersionBean.getId());
if (itemGroupBeans.size() > 0) {
// get a DisplaySectionBean for each section of the CRF, sort
// them, then
// dispatch the request to a print JSP. The constructor for this
// handler takes
// a boolean value depending on whether data is involved or not
// ('false' in terms of this
// servlet; see PrintDataEntryServlet).
DisplaySectionBeanHandler handler = new DisplaySectionBeanHandler(false, getDataSource(), getServletContext());
handler.setCrfVersionId(crfVersionBean.getId());
handler.setEventCRFId(eventCRFId);
List<DisplaySectionBean> displaySectionBeans = handler.getDisplaySectionBeans();
request.setAttribute("listOfDisplaySectionBeans", displaySectionBeans);
// Make available the CRF names and versions for
// the web page's header
CRFVersionBean crfverBean = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
request.setAttribute("crfVersionBean", crfverBean);
request.setAttribute("crfBean", crfBean);
// Set an attribute signaling that data is not involved
request.setAttribute("dataInvolved", "false");
PrintCRFBean printCrfBean = new PrintCRFBean();
printCrfBean.setDisplaySectionBeans(displaySectionBeans);
printCrfBean.setCrfVersionBean(crfVersionBean);
printCrfBean.setCrfBean(crfBean);
printCrfBean.setEventCrfBean(ecb);
printCrfBeans.add(printCrfBean);
printCrfBean.setGrouped(true);
// IllegalStateException
continue;
}
ecb = new EventCRFBean();
ecb.setCRFVersionId(crfVersionBean.getId());
CRFVersionBean version = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
ArrayList sects = (ArrayList) sdao.findByVersionId(version.getId());
for (int i = 0; i < sects.size(); i++) {
sb = (SectionBean) sects.get(i);
//super.sb = sb;
int sectId = sb.getId();
if (sectId > 0) {
allSectionBeans.add((SectionBean) sdao.findByPK(sectId));
}
}
request.setAttribute(ALL_SECTION_BEANS, allSectionBeans);
request.setAttribute(INPUT_EVENT_CRF, ecb);
sectionBeans = super.getAllDisplayBeans(request);
request.setAttribute(SECTION_BEAN, sb);
DisplaySectionBean dsb = super.getDisplayBean(false, false, request, isSubmitted);
// request.setAttribute("allSections", sectionBeans);
// request.setAttribute("displayAllCRF", "1");
// request.setAttribute(BEAN_DISPLAY, dsb);
// request.setAttribute(BEAN_ANNOTATIONS, ecb.getAnnotations());
// request.setAttribute("sec", sb);
// request.setAttribute("EventCRFBean", super.ecb);
PrintCRFBean printCrfBean = new PrintCRFBean();
printCrfBean.setAllSections(sectionBeans);
printCrfBean.setDisplaySectionBean(dsb);
printCrfBean.setEventCrfBean(ecb);
printCrfBean.setCrfVersionBean(crfVersionBean);
printCrfBean.setCrfBean(crfBean);
printCrfBeans.add(printCrfBean);
printCrfBean.setGrouped(false);
}
String studyName = null;
String siteName = null;
if (currentStudy.getParentStudyId() > 0) {
studyName = currentStudy.getParentStudyName();
siteName = currentStudy.getName();
} else {
studyName = currentStudy.getName();
}
request.setAttribute("printCrfBeans", printCrfBeans);
request.setAttribute("studyName", studyName);
request.setAttribute("site", siteName);
request.setAttribute("eventDefinition", sed.getName());
forwardPage(Page.VIEW_DEFAULT_CRF_VERSIONS_PRINT, request, response);
}
}
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