Examples with ItemGroupBean org.akaza.openclinica.bean.submit.ItemGroupBean used on opensource projects

Example 26 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class PrintAllEventCRFServlet method processRequest.

@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
    FormProcessor fp = new FormProcessor(request);
    SessionManager sm = (SessionManager) request.getSession().getAttribute("sm");
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    ArrayList<SectionBean> allSectionBeans;
    // The PrintDataEntry servlet handles this parameter
    boolean isSubmitted = false;
    StudyEventDefinitionDAO sedao = new StudyEventDefinitionDAO(sm.getDataSource());
    EventDefinitionCRFDAO edao = new EventDefinitionCRFDAO(sm.getDataSource());
    EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
    StudyDAO studyDao = new StudyDAO(sm.getDataSource());
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    ArrayList<StudyEventDefinitionBean> seds = new ArrayList<StudyEventDefinitionBean>();
    seds = sedao.findAllByStudy(currentStudy);
    //        ArrayList eventDefinitionCRFs = (ArrayList) edao.findAllByStudy(site);
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    ArrayList<EventDefinitionCRFBean> edcs = new ArrayList();
    for (StudyEventDefinitionBean sed : seds) {
        int defId = sed.getId();
        edcs.addAll(edcdao.findAllByDefinition(currentStudy, defId));
    }
    Map eventDefinitionDefaultVersions = new LinkedHashMap();
    for (int i = 0; i < edcs.size(); i++) {
        EventDefinitionCRFBean edc = edcs.get(i);
        ArrayList versions = (ArrayList) cvdao.findAllByCRF(edc.getCrfId());
        edc.setVersions(versions);
        CRFBean crf = (CRFBean) cdao.findByPK(edc.getCrfId());
        // edc.setCrfLabel(crf.getLabel());
        edc.setCrfName(crf.getName());
        // to show/hide edit action on jsp page
        if (crf.getStatus().equals(Status.AVAILABLE)) {
            edc.setOwner(crf.getOwner());
        }
        CRFVersionBean defaultVersion = (CRFVersionBean) cvdao.findByPK(edc.getDefaultVersionId());
        StudyEventDefinitionBean studyEventDefinitionBean = (StudyEventDefinitionBean) sedao.findByPK(edc.getStudyEventDefinitionId());
        edc.setDefaultVersionName(defaultVersion.getName());
        if (defaultVersion.getStatus().isAvailable()) {
            List list = (ArrayList) eventDefinitionDefaultVersions.get(studyEventDefinitionBean);
            if (list == null)
                list = new ArrayList();
            list.add(defaultVersion);
            eventDefinitionDefaultVersions.put(studyEventDefinitionBean, list);
        }
    }
    // Whether IE6 or IE7 is involved
    String isIE = fp.getString("ie");
    if ("y".equalsIgnoreCase(isIE)) {
        request.setAttribute("isInternetExplorer", "true");
    }
    SectionDAO sdao = new SectionDAO(sm.getDataSource());
    CRFVersionDAO crfVersionDAO = new CRFVersionDAO(sm.getDataSource());
    CRFDAO crfDao = new CRFDAO(sm.getDataSource());
    Map sedCrfBeans = null;
    for (Iterator it = eventDefinitionDefaultVersions.keySet().iterator(); it.hasNext(); ) {
        if (sedCrfBeans == null)
            sedCrfBeans = new LinkedHashMap();
        StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) it.next();
        List crfVersions = (ArrayList) eventDefinitionDefaultVersions.get(sedBean);
        for (Iterator crfIt = crfVersions.iterator(); crfIt.hasNext(); ) {
            CRFVersionBean crfVersionBean = (CRFVersionBean) crfIt.next();
            allSectionBeans = new ArrayList<SectionBean>();
            ArrayList sectionBeans = new ArrayList();
            ItemGroupDAO itemGroupDao = new ItemGroupDAO(sm.getDataSource());
            // Find truely grouped tables, not groups with a name of 'Ungrouped'
            List<ItemGroupBean> itemGroupBeans = itemGroupDao.findOnlyGroupsByCRFVersionID(crfVersionBean.getId());
            CRFBean crfBean = crfDao.findByVersionId(crfVersionBean.getId());
            if (itemGroupBeans.size() > 0) {
                // get a DisplaySectionBean for each section of the CRF, sort
                // them, then
                // dispatch the request to a print JSP. The constructor for this
                // handler takes
                // a boolean value depending on whether data is involved or not
                // ('false' in terms of this
                // servlet; see PrintDataEntryServlet).
                DisplaySectionBeanHandler handler = new DisplaySectionBeanHandler(false, getDataSource(), getServletContext());
                handler.setCrfVersionId(crfVersionBean.getId());
                //handler.setEventCRFId(eventCRFId);
                List<DisplaySectionBean> displaySectionBeans = handler.getDisplaySectionBeans();
                request.setAttribute("listOfDisplaySectionBeans", displaySectionBeans);
                // Make available the CRF names and versions for
                // the web page's header
                CRFVersionBean crfverBean = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
                request.setAttribute("crfVersionBean", crfverBean);
                request.setAttribute("crfBean", crfBean);
                // Set an attribute signaling that data is not involved
                request.setAttribute("dataInvolved", "false");
                PrintCRFBean printCrfBean = new PrintCRFBean();
                printCrfBean.setDisplaySectionBeans(displaySectionBeans);
                printCrfBean.setCrfVersionBean(crfVersionBean);
                printCrfBean.setCrfBean(crfBean);
                printCrfBean.setEventCrfBean(ecb);
                printCrfBean.setGrouped(true);
                List list = (ArrayList) sedCrfBeans.get(sedBean);
                if (list == null)
                    list = new ArrayList();
                list.add(printCrfBean);
                sedCrfBeans.put(sedBean, list);
                continue;
            }
            ecb = new EventCRFBean();
            ecb.setCRFVersionId(crfVersionBean.getId());
            CRFVersionBean version = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
            ArrayList sects = (ArrayList) sdao.findByVersionId(version.getId());
            for (int i = 0; i < sects.size(); i++) {
                sb = (SectionBean) sects.get(i);
                //                    super.sb = sb;
                int sectId = sb.getId();
                if (sectId > 0) {
                    allSectionBeans.add((SectionBean) sdao.findByPK(sectId));
                }
            }
            request.setAttribute(INPUT_EVENT_CRF, ecb);
            request.setAttribute(SECTION_BEAN, sb);
            request.setAttribute(ALL_SECTION_BEANS, allSectionBeans);
            sectionBeans = super.getAllDisplayBeans(request);
            DisplaySectionBean dsb = super.getDisplayBean(false, false, request, isSubmitted);
            PrintCRFBean printCrfBean = new PrintCRFBean();
            printCrfBean.setAllSections(sectionBeans);
            printCrfBean.setDisplaySectionBean(dsb);
            printCrfBean.setEventCrfBean(ecb);
            printCrfBean.setCrfVersionBean(crfVersionBean);
            printCrfBean.setCrfBean(crfBean);
            printCrfBean.setGrouped(false);
            List list = (ArrayList) sedCrfBeans.get(sedBean);
            if (list == null)
                list = new ArrayList();
            list.add(printCrfBean);
            sedCrfBeans.put(sedBean, list);
        }
    }
    request.setAttribute("sedCrfBeans", sedCrfBeans);
    request.setAttribute("studyName", currentStudy.getName());
    forwardPage(Page.VIEW_ALL_DEFAULT_CRF_VERSIONS_PRINT, request, response);
}

Example 27 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class ViewSectionDataEntryRESTUrlServlet method processRequest.

@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
    FormProcessor fp = new FormProcessor(request);
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    boolean isSubmitted = false;
    EventDefinitionCRFBean edcb = (EventDefinitionCRFBean) request.getAttribute(EVENT_DEF_CRF_BEAN);
    if (!fp.getString("exitTo").equals("")) {
        request.setAttribute("exitTo", request.getContextPath() + "/" + fp.getString("exitTo"));
    }
    int crfVersionId = fp.getInt("crfVersionId", true);
    Integer sectionId = (Integer) request.getAttribute("sectionId");
    if (sectionId == null || sectionId == 0) {
        sectionId = new Integer(1);
    }
    int eventCRFId = fp.getInt(EVENT_CRF_ID, true);
    int studySubjectId = fp.getInt("studySubjectId", true);
    String action = fp.getString("action");
    HttpSession session = request.getSession();
    String fromResolvingNotes = fp.getString("fromResolvingNotes", true);
    if (StringUtil.isBlank(fromResolvingNotes)) {
        session.removeAttribute(ViewNotesServlet.WIN_LOCATION);
        session.removeAttribute(ViewNotesServlet.NOTES_TABLE);
    }
    // Added for
    request.setAttribute("studySubjectId", studySubjectId + "");
    // Mantis
    // Issue
    // 2268
    // Added
    request.setAttribute("crfListPage", fp.getString("crfListPage"));
    // for
    // Mantis
    // Issue
    // 2268
    // Added for
    request.setAttribute("eventId", fp.getString("eventId"));
    // Mantis
    // Issue
    // 2268
    // YW <<
    int sedId = fp.getInt("sedId");
    request.setAttribute("sedId", sedId + "");
    int crfId = fp.getInt("crfId");
    // BWP>> ... try to get crfId from crfVersionId
    if (crfId == 0 && crfVersionId > 0) {
        CRFVersionDAO crfVDao = new CRFVersionDAO(getDataSource());
        CRFVersionBean crvVBean = (CRFVersionBean) crfVDao.findByPK(crfVersionId);
        if (crvVBean != null) {
            crfId = crvVBean.getCrfId();
        }
    }
    // YW >>
    // int eventDefinitionCRFId = fp.getInt("eventDefinitionCRFId");
    Integer eventDefinitionCRFId = (Integer) (request.getAttribute("eventDefinitionCRFId"));
    EventDefinitionCRFDAO eventCrfDao = new EventDefinitionCRFDAO(getDataSource());
    edcb = (EventDefinitionCRFBean) eventCrfDao.findByPK(eventDefinitionCRFId);
    if (eventCRFId == 0 && edcb.getStudyId() != currentStudy.getParentStudyId() && edcb.getStudyId() != currentStudy.getId()) {
        addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_study_contact_sysadmin"), request);
        throw new InsufficientPermissionException(Page.MENU_SERVLET, resexception.getString("not_director"), "1");
    }
    if (crfId == 0 && eventDefinitionCRFId > 0) {
        // eventCrfDao.findByPK(eventDefinitionCRFId);
        if (edcb != null) {
            crfId = edcb.getCrfId();
        }
    }
    request.setAttribute("crfId", crfId + "");
    request.setAttribute("eventDefinitionCRFId", eventDefinitionCRFId + "");
    String printVersion = fp.getString("print");
    // BWP>> this has to be removed for CRFs that do not display an
    // interviewdate
    // for a particular event
    session.removeAttribute("presetValues");
    EventCRFDAO ecdao = new EventCRFDAO(getDataSource());
    SectionDAO sdao = new SectionDAO(getDataSource());
    String age = "";
    if (sectionId == 0 && crfVersionId == 0 && eventCRFId == 0) {
        addPageMessage(respage.getString("please_choose_a_CRF_to_view"), request);
        // forwardPage(Page.SUBMIT_DATA_SERVLET);
        forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
        // >> changed tbh, 06/2009
        return;
    }
    if (studySubjectId > 0) {
        StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
        StudySubjectBean sub = (StudySubjectBean) ssdao.findByPK(studySubjectId);
        request.setAttribute("studySubject", sub);
    }
    if (eventCRFId > 0) {
        // for event crf, the input crfVersionId from url =0
        ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
        StudyEventDAO sedao = new StudyEventDAO(getDataSource());
        StudyEventBean event = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
        // event.getSubjectEventStatus().getName());
        if (event.getSubjectEventStatus().equals(SubjectEventStatus.LOCKED)) {
            request.setAttribute("isLocked", "yes");
        // System.out.println("this event crf is locked");
        } else // @pgawade 28-Aug-2012 Reverted the change no. 2 in
        // https://issuetracker.openclinica.com/view.php?id=12343#c56722
        {
            request.setAttribute("isLocked", "no");
        }
        if (studySubjectId <= 0) {
            studySubjectId = event.getStudySubjectId();
            request.setAttribute("studySubjectId", studySubjectId + "");
        }
        // Get the status/number of item discrepancy notes
        DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
        ArrayList<DiscrepancyNoteBean> allNotes = new ArrayList<DiscrepancyNoteBean>();
        List<DiscrepancyNoteBean> eventCrfNotes = new ArrayList<DiscrepancyNoteBean>();
        List<DiscrepancyNoteThread> noteThreads = new ArrayList<DiscrepancyNoteThread>();
        // if (eventCRFId > 0) {
        // this method finds only parent notes
        allNotes = dndao.findAllTopNotesByEventCRF(eventCRFId);
        // add interviewer.jsp related notes to this Collection
        eventCrfNotes = dndao.findOnlyParentEventCRFDNotesFromEventCRF(ecb);
        if (!eventCrfNotes.isEmpty()) {
            allNotes.addAll(eventCrfNotes);
            // make sure a necessary request attribute "hasNameNote" is set
            // properly
            this.setAttributeForInterviewerDNotes(eventCrfNotes, request);
        }
        // }
        // Create disc note threads out of the various notes
        DiscrepancyNoteUtil dNoteUtil = new DiscrepancyNoteUtil();
        noteThreads = dNoteUtil.createThreadsOfParents(allNotes, getDataSource(), currentStudy, null, -1, true);
        // variables that provide values for the CRF discrepancy note header
        int updatedNum = 0;
        int openNum = 0;
        int closedNum = 0;
        int resolvedNum = 0;
        int notAppNum = 0;
        DiscrepancyNoteBean tempBean;
        for (DiscrepancyNoteThread dnThread : noteThreads) {
            /*
                 * 3014: do not count parent beans, only the last child disc
                 * note of the thread.
                 */
            tempBean = dnThread.getLinkedNoteList().getLast();
            if (tempBean != null) {
                if (ResolutionStatus.UPDATED.equals(tempBean.getResStatus())) {
                    updatedNum++;
                } else if (ResolutionStatus.OPEN.equals(tempBean.getResStatus())) {
                    openNum++;
                } else if (ResolutionStatus.CLOSED.equals(tempBean.getResStatus())) {
                    // if (dn.getParentDnId() > 0){
                    closedNum++;
                // }
                } else if (ResolutionStatus.RESOLVED.equals(tempBean.getResStatus())) {
                    // if (dn.getParentDnId() > 0){
                    resolvedNum++;
                // }
                } else if (ResolutionStatus.NOT_APPLICABLE.equals(tempBean.getResStatus())) {
                    notAppNum++;
                }
            }
        }
        request.setAttribute("updatedNum", updatedNum + "");
        request.setAttribute("openNum", openNum + "");
        request.setAttribute("closedNum", closedNum + "");
        request.setAttribute("resolvedNum", resolvedNum + "");
        request.setAttribute("notAppNum", notAppNum + "");
        DisplayTableOfContentsBean displayBean = TableOfContentsServlet.getDisplayBean(ecb, getDataSource(), currentStudy);
        // Make sure that the interviewDate in the eventCRF is properly
        // formatted
        // for viewSectionDataEntry.jsp --> interviewer.jsp
        // int studyEventId = (Integer)request.getAttribute("studyEvent");
        // SimpleDateFormat formatter = new SimpleDateFormat("MM/dd/yyyy");
        //
        Date tmpDate = displayBean.getEventCRF().getDateInterviewed();
        String formattedInterviewerDate;
        try {
            DateFormat local_df = new SimpleDateFormat(resformat.getString("date_format_string"), ResourceBundleProvider.getLocale());
            formattedInterviewerDate = local_df.format(tmpDate);
        } catch (Exception e) {
            formattedInterviewerDate = "";
        }
        HashMap presetVals = (HashMap) session.getAttribute("presetValues");
        if (presetVals == null) {
            presetVals = new HashMap();
            session.setAttribute("presetValues", presetVals);
        }
        presetVals.put("interviewDate", formattedInterviewerDate);
        request.setAttribute("toc", displayBean);
        ArrayList sections = displayBean.getSections();
        request.setAttribute("sectionNum", sections.size() + "");
        if (!sections.isEmpty()) {
            if (sectionId == 0) {
                SectionBean firstSec = (SectionBean) sections.get(0);
                sectionId = firstSec.getId();
            }
        } else {
            addPageMessage(respage.getString("there_are_no_sections_ins_this_CRF"), request);
            // forwardPage(Page.SUBMIT_DATA_SERVLET);
            forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
            // >> changed tbh, 06/2009
            return;
        }
    } else if (crfVersionId > 0) {
        // for viewing blank CRF
        DisplayTableOfContentsBean displayBean = ViewTableOfContentServlet.getDisplayBean(getDataSource(), crfVersionId);
        request.setAttribute("toc", displayBean);
        ArrayList sections = displayBean.getSections();
        request.setAttribute("sectionNum", sections.size() + "");
        if (!sections.isEmpty()) {
            if (sectionId == 0) {
                SectionBean firstSec = (SectionBean) sections.get(0);
                sectionId = firstSec.getId();
            }
        } else {
            addPageMessage(respage.getString("there_are_no_sections_ins_this_CRF_version"), request);
            if (eventCRFId == 0) {
                forwardPage(Page.CRF_LIST_SERVLET, request, response);
            } else {
                // forwardPage(Page.SUBMIT_DATA_SERVLET);
                forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
            // >> changed tbh, 06/2009
            }
            return;
        }
    }
    sb = (SectionBean) sdao.findByPK(sectionId);
    if (eventCRFId == 0) {
        ecb = new EventCRFBean();
        ecb.setCRFVersionId(sb.getCRFVersionId());
        if (currentStudy.getParentStudyId() > 0) {
            // this is a site,find parent
            StudyDAO studydao = new StudyDAO(getDataSource());
            StudyBean parentStudy = (StudyBean) studydao.findByPK(currentStudy.getParentStudyId());
            request.setAttribute("studyTitle", parentStudy.getName());
            request.setAttribute("siteTitle", currentStudy.getName());
        } else {
            request.setAttribute("studyTitle", currentStudy.getName());
        }
    } else {
        ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
        request.setAttribute(INPUT_EVENT_CRF, ecb);
        request.setAttribute(SECTION_BEAN, sb);
        // This is the StudySubjectBean
        StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
        StudySubjectBean sub = (StudySubjectBean) ssdao.findByPK(ecb.getStudySubjectId());
        // This is the SubjectBean
        SubjectDAO subjectDao = new SubjectDAO(getDataSource());
        int subjectId = sub.getSubjectId();
        int studyId = sub.getStudyId();
        SubjectBean subject = (SubjectBean) subjectDao.findByPK(subjectId);
        // Let us process the age
        if (currentStudy.getStudyParameterConfig().getCollectDob().equals("1")) {
            StudyEventDAO sedao = new StudyEventDAO(getDataSource());
            StudyEventBean se = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
            StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(getDataSource());
            StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
            se.setStudyEventDefinition(sed);
            request.setAttribute("studyEvent", se);
            // YW 11-16-2007 enrollment-date is used for computing age
            age = Utils.getInstacne().processAge(sub.getEnrollmentDate(), subject.getDateOfBirth());
        }
        // Get the study then the parent study
        StudyDAO studydao = new StudyDAO(getDataSource());
        StudyBean study = (StudyBean) studydao.findByPK(studyId);
        if (study.getParentStudyId() > 0) {
            // this is a site,find parent
            StudyBean parentStudy = (StudyBean) studydao.findByPK(study.getParentStudyId());
            request.setAttribute("studyTitle", parentStudy.getName());
            request.setAttribute("siteTitle", study.getName());
        } else {
            request.setAttribute("studyTitle", study.getName());
        }
        request.setAttribute("studySubject", sub);
        request.setAttribute("subject", subject);
        request.setAttribute("age", age);
    }
    // FormBeanUtil formUtil = new FormBeanUtil();
    // DisplaySectionBean newDisplayBean = new DisplaySectionBean();
    boolean hasItemGroup = false;
    // we will look into db to see if any repeating items for this CRF
    // section
    ItemGroupDAO igdao = new ItemGroupDAO(getDataSource());
    List<ItemGroupBean> itemGroups = igdao.findLegitGroupBySectionId(sectionId);
    if (!itemGroups.isEmpty()) {
        hasItemGroup = true;
    }
    // if the List of DisplayFormGroups is empty, then the servlet defers to
    // the prior method
    // of generating a DisplaySectionBean for the application
    DisplaySectionBean dsb;
    // want to get displayBean with grouped and ungrouped items
    request.setAttribute(EVENT_DEF_CRF_BEAN, edcb);
    request.setAttribute(INPUT_EVENT_CRF, ecb);
    request.setAttribute(SECTION_BEAN, sb);
    dsb = super.getDisplayBean(hasItemGroup, false, request, isSubmitted);
    FormDiscrepancyNotes discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
    if (discNotes == null) {
        discNotes = new FormDiscrepancyNotes();
        session.setAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME, discNotes);
    }
    /*
         * if (hasItemGroup) { //
         * dsb.setDisplayItemGroups(newDisplayBean.getDisplayItemGroups());
         * request.setAttribute("new_table", true); }
         */
    // If the Horizontal type table will be used, then set the
    // DisplaySectionBean's
    // DisplayFormGroups List to the ones we have just generated
    // @pgawade 30-May-2012 Fix for issue 13963 - added an extra parameter
    // 'isSubmitted' to method createItemWithGroups
    List<DisplayItemWithGroupBean> displayItemWithGroups = super.createItemWithGroups(dsb, hasItemGroup, eventDefinitionCRFId, request, isSubmitted);
    dsb.setDisplayItemGroups(displayItemWithGroups);
    super.populateNotesWithDBNoteCounts(discNotes, dsb, request);
    if (fp.getString("fromViewNotes") != null && "1".equals(fp.getString("fromViewNotes"))) {
        request.setAttribute("fromViewNotes", fp.getString("fromViewNotes"));
    } else {
        session.removeAttribute("viewNotesURL");
    }
    if ("saveNotes".equalsIgnoreCase(action)) {
        LOGGER.info("33333how many group rows:" + dsb.getDisplayItemGroups().size());
        // let's save notes for the blank items
        DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
        discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
        for (int i = 0; i < dsb.getDisplayItemGroups().size(); i++) {
            DisplayItemWithGroupBean diwb = dsb.getDisplayItemGroups().get(i);
            if (diwb.isInGroup()) {
                List<DisplayItemGroupBean> dgbs = diwb.getItemGroups();
                LOGGER.info("dgbs size: " + dgbs.size());
                for (int j = 0; j < dgbs.size(); j++) {
                    DisplayItemGroupBean displayGroup = dgbs.get(j);
                    List<DisplayItemBean> items = displayGroup.getItems();
                    LOGGER.info("item size: " + items.size());
                    for (DisplayItemBean displayItem : items) {
                        String inputName = getGroupItemInputName(displayGroup, j, displayItem);
                        LOGGER.info("inputName:" + inputName);
                        LOGGER.info("item data id:" + displayItem.getData().getId());
                        AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, displayItem.getData().getId(), "itemData", currentStudy);
                    }
                }
            } else {
                DisplayItemBean dib = diwb.getSingleItem();
                // TODO work on this line
                String inputName = getInputName(dib);
                AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, dib.getData().getId(), DiscrepancyNoteBean.ITEM_DATA, currentStudy);
                ArrayList childItems = dib.getChildren();
                for (int j = 0; j < childItems.size(); j++) {
                    DisplayItemBean child = (DisplayItemBean) childItems.get(j);
                    inputName = getInputName(child);
                    AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, dib.getData().getId(), DiscrepancyNoteBean.ITEM_DATA, currentStudy);
                }
            }
        }
        addPageMessage("Discrepancy notes are saved successfully.", request);
        request.setAttribute("id", studySubjectId + "");
        forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET, request, response);
        // "ViewStudySubject?id=" + studySubjectId));
        return;
    } else {
        request.setAttribute(BEAN_DISPLAY, dsb);
        request.setAttribute(BEAN_ANNOTATIONS, ecb.getAnnotations());
        request.setAttribute("sec", sb);
        request.setAttribute("EventCRFBean", ecb);
        int tabNum = 1;
        if ("".equalsIgnoreCase(fp.getString("tabId"))) {
            tabNum = 1;
        } else {
            tabNum = fp.getInt("tabId");
        }
        request.setAttribute("tabId", new Integer(tabNum).toString());
        // 2808: Signal interviewer.jsp that the containing page is
        // viewSectionData,
        // for the purpose of suppressing discrepancy note icons for the
        // interview date and name fields
        request.setAttribute(ENCLOSING_PAGE, "viewSectionData");
        if ("yes".equalsIgnoreCase(printVersion)) {
            forwardPage(Page.VIEW_SECTION_DATA_ENTRY_PRINT, request, response);
        } else {
            forwardPage(Page.VIEW_SECTION_DATA_ENTRY, request, response);
        }
    }
}

Example 28 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class DataEntryServlet method loadFormValueForItemGroup.

/**
     * This methods will create an array of DisplayItemGroupBean, which contains multiple rows for an item group on the data entry form.
     *
     * @param digb
     *            The Item group which has multiple data rows
     * @param dbGroups
     *            The original array got from DB which contains multiple data rows
     * @param formGroups
     *            The new array got from front end which contains multiple data rows
     * @param request TODO
     * @return new constructed formGroups, compare to dbGroups, some rows are update, some new ones are added and some are removed
     */
protected List<DisplayItemGroupBean> loadFormValueForItemGroup(DisplayItemGroupBean digb, List<DisplayItemGroupBean> dbGroups, List<DisplayItemGroupBean> formGroups, int eventDefCRFId, HttpServletRequest request) {
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    int repeatMax = digb.getGroupMetaBean().getRepeatMax();
    FormProcessor fp = new FormProcessor(request);
    ItemDAO idao = new ItemDAO(getDataSource());
    List<ItemBean> itBeans = idao.findAllItemsByGroupId(digb.getItemGroupBean().getId(), sb.getCRFVersionId());
    LOGGER.debug("+++ starting to review groups: " + repeatMax);
    long timeCheck = System.currentTimeMillis();
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    // adding this code from below, since we want to pass a null values list
    // in all cases of getDisplayBeansFromItems().
    // For adding null values to display items
    FormBeanUtil formBeanUtil = new FormBeanUtil();
    List<String> nullValuesList = new ArrayList<String>();
    // BWP>> Get a List<String> of any null values such as NA or NI
    // method returns null values as a List<String>
    nullValuesList = formBeanUtil.getNullValuesByEventCRFDefId(eventDefCRFId, getDataSource());
    // >>BWP
    // logger.trace("+++ starting to review groups 2: " + repeatMax);
    long two = System.currentTimeMillis() - timeCheck;
    // logger.trace("time 2: " + two + "ms");
    // >>TBH below dual for loops need a breaker to avoid a performance hit
    int firstLoopBreak = 0;
    int secondLoopBreak = 0;
    ItemDataDAO iddao = new ItemDataDAO(getDataSource(), locale);
    int maxOrdinal = iddao.getMaxOrdinalForGroup(ecb, sb, digb.getItemGroupBean());
    repeatMax = (repeatMax < maxOrdinal) ? maxOrdinal : repeatMax;
    for (int i = 0; i < repeatMax; i++) {
        DisplayItemGroupBean formGroup = new DisplayItemGroupBean();
        formGroup.setItemGroupBean(digb.getItemGroupBean());
        formGroup.setGroupMetaBean(runDynamicsCheck(digb.getGroupMetaBean(), request));
        ItemGroupBean igb = digb.getItemGroupBean();
        // want to do deep copy here, so always get a fresh copy for items,
        // may use other better way to do, like clone
        List<DisplayItemBean> dibs = FormBeanUtil.getDisplayBeansFromItems(itBeans, getDataSource(), ecb, sb.getId(), nullValuesList, getServletContext());
        // and then get newly created rows later, tbh 01/2010
        if (fp.getStartsWith(igb.getOid() + "_manual" + i + "input")) {
            formGroup.setOrdinal(i);
            formGroup.setFormInputOrdinal(i);
            formGroup.setAuto(false);
            formGroup.setInputId(igb.getOid() + "_manual" + i);
            LOGGER.debug("1: set auto to false for " + igb.getOid() + " " + i);
            dibs = processInputForGroupItem(fp, dibs, i, digb, false);
            formGroup.setItems(dibs);
            formGroups.add(formGroup);
        } else if (!StringUtil.isBlank(fp.getString(igb.getOid() + "_manual" + i + ".newRow"))) {
            // ||
            // (fp.getStartsWith(igb.getOid() + "_manual" + i + "input"))) {
            // the ordinal is the number got from [ ] and submitted by
            // repetition javascript
            formGroup.setOrdinal(i);
            formGroup.setFormInputOrdinal(i);
            formGroup.setInputId(igb.getOid() + "_manual" + i + ".newRow");
            formGroup.setAuto(false);
            LOGGER.debug("2: set auto to false for " + igb.getOid() + " " + i);
            dibs = processInputForGroupItem(fp, dibs, i, digb, false);
            formGroup.setItems(dibs);
            formGroups.add(formGroup);
        } else {
            firstLoopBreak++;
        }
        if (firstLoopBreak > 14) {
            LOGGER.debug("break first loop");
            break;
        }
    }
    // end of for (int i = 0; i < repeatMax; i++)
    // >>TBH remove the above eventually, repeat some work here?
    LOGGER.trace("+++ starting to review groups 3: " + repeatMax);
    two = System.currentTimeMillis() - timeCheck;
    LOGGER.trace("time 3: " + two + "ms");
    // had the call to form bean utils here, tbh
    for (int i = 0; i < repeatMax; i++) {
        DisplayItemGroupBean formGroup = new DisplayItemGroupBean();
        formGroup.setItemGroupBean(digb.getItemGroupBean());
        //            try {
        //                // set isShown here, tbh 04/2010
        //                boolean showGroup = getItemMetadataService().isGroupShown(digb.getGroupMetaBean().getId(), ecb);
        //                logger.debug("found show group for group meta bean " + digb.getGroupMetaBean().getId() + ": " + showGroup);
        //                if (showGroup) {
        //                    digb.getGroupMetaBean().setShowGroup(showGroup);
        //                    // we are only hiding, not showing (for now) tbh
        //                }
        //                // << tbh 04/2010
        //            } catch (OpenClinicaException oce) {
        //                // do nothing for right now, just store the bean
        //                logger.debug("throws an OCE for " + digb.getGroupMetaBean().getId());
        //            }
        formGroup.setGroupMetaBean(runDynamicsCheck(digb.getGroupMetaBean(), request));
        ItemGroupBean igb = digb.getItemGroupBean();
        // adding this code from below, since we want to pass a null values
        // list
        // in all cases of getDisplayBeansFromItems().
        // For adding null values to display items
        // FormBeanUtil formBeanUtil = new FormBeanUtil();
        // List<String> nullValuesList = new ArrayList<String>();
        // BWP>> Get a List<String> of any null values such as NA or NI
        // method returns null values as a List<String>
        // >>BWP
        // want to do deep copy here, so always get a fresh copy for items,
        // may use other better way to do, like clone
        // moved it back down here to fix another bug, tbh 12-3-2007
        List<DisplayItemBean> dibs = FormBeanUtil.getDisplayBeansFromItems(itBeans, getDataSource(), ecb, sb.getId(), nullValuesList, getServletContext());
        LOGGER.trace("+++count for dibs after deep copy: " + dibs.size());
        two = System.currentTimeMillis() - timeCheck;
        // created by rep model(add button)
        if (fp.getStartsWith(igb.getOid() + "_" + i + "input")) {
            formGroup.setInputId(igb.getOid() + "_" + i);
            if (i == 0) {
                // ordinal that will be saved into
                formGroup.setOrdinal(i);
            // DB
            } else {
                // from 0 again, the
                formGroup.setFormInputOrdinal(i);
            // ordinal from front
            // end page, needs to be
            // reprocessed
            }
            formGroup.setAuto(true);
            LOGGER.debug("1: set auto to TRUE for " + igb.getOid() + " " + i);
            dibs = processInputForGroupItem(fp, dibs, i, digb, true);
            LOGGER.trace("+++ group ordinal: " + i + " igb name " + igb.getName());
            formGroup.setItems(dibs);
            formGroups.add(formGroup);
        } else if (!StringUtil.isBlank(fp.getString(igb.getOid() + "_" + i + ".newRow"))) {
            // || (fp.getStartsWith(igb.getOid() + "_" + i + "input"))) {
            // the ordinal is the number got from [ ] and submitted by
            // repetition javascript
            formGroup.setInputId(igb.getOid() + "_" + i);
            if (i == 0) {
                // ordinal that will be saved into
                formGroup.setOrdinal(i);
            // DB
            } else {
                // from 0 again, the
                formGroup.setFormInputOrdinal(i);
            // ordinal from front
            // end page, needs to be
            // reprocessed
            }
            // String fieldName = igb.getOid() + "_" + i + this.getInputName(dib);
            // if (!StringUtil.isBlank(fp.getString(fieldName))) {
            // if (i != repeatMax) {
            // formGroup.setAuto(false);
            // logger.debug("set auto to false for " + igb.getOid() + " " + i);
            // } else {
            formGroup.setAuto(true);
            LOGGER.debug("2: set auto to TRUE for " + igb.getOid() + " " + i);
            dibs = processInputForGroupItem(fp, dibs, i, digb, true);
            LOGGER.trace("+++ group ordinal: " + i + " igb name " + igb.getName());
            formGroup.setItems(dibs);
            formGroups.add(formGroup);
        } else {
            secondLoopBreak++;
        }
        if (secondLoopBreak > 14) {
            LOGGER.debug("break second loop");
            break;
        }
    }
    // end of for (int i = 0; i < repeatMax; i++)
    LOGGER.debug("first loop: " + firstLoopBreak);
    LOGGER.debug("second loop: " + secondLoopBreak);
    LOGGER.trace("+++ starting to review groups 4: " + repeatMax);
    two = System.currentTimeMillis() - timeCheck;
    LOGGER.trace("time 4: " + two + "ms");
    // checks how many rows are manually created, not added by repetition
    // model
    int manualRows = getManualRows(formGroups);
    // for (int j = 0; j < formGroups.size(); j++) {
    // DisplayItemGroupBean formItemGroup = formGroups.get(j);
    // // logger.trace("begin formGroup Ordinal:" +
    // // formItemGroup.getOrdinal());
    // if (formItemGroup.isAuto() == false) {
    // manualRows = manualRows + 1;
    // }
    // }
    LOGGER.debug(" manual rows " + manualRows + " formGroup size " + formGroups.size());
    request.setAttribute("manualRows", new Integer(manualRows));
    // reset ordinal for the auto-created rows except for the first row
    for (int j = 0; j < formGroups.size(); j++) {
        DisplayItemGroupBean formItemGroup = formGroups.get(j);
        if (formItemGroup.isAuto() && formItemGroup.getFormInputOrdinal() > 0) {
            LOGGER.trace("+++ formInputOrdinal() " + formItemGroup.getFormInputOrdinal());
            // rows included in the model: first row, last existing row and
            // new rows
            // the rows in between are manually added
            // set the correct ordinal that will be saved into DB
            // the rows generated by model starts from 0, need to add the
            // number of manual rows to
            // get the correct ordinals, otherwise, we will have duplicate
            // ordinals like two ordinal 0
            formItemGroup.setOrdinal(formItemGroup.getFormInputOrdinal() + manualRows);
        }
    }
    LOGGER.trace("+++ starting to review groups 5: " + repeatMax);
    two = System.currentTimeMillis() - timeCheck;
    LOGGER.trace("time 5: " + two + "ms");
    // sort all the rows by ordinal
    Collections.sort(formGroups);
    LOGGER.trace("group row size:" + formGroups.size());
    // suppose we have 3 rows of data from db, the orginal order is 0,1,2,
    // repetition model will submit row number in [ ] like the following:
    // 0,1,2.. consecutive numbers, means no row removed in between
    // 0,1,3,4.. the 2rd row is removed, 3 and 4 are new rows
    int previous = -1;
    for (int j = 0; j < formGroups.size(); j++) {
        DisplayItemGroupBean formItemGroup = formGroups.get(j);
        LOGGER.trace("formGroup Ordinal:" + formItemGroup.getOrdinal());
        // tbh 08/2009
        if (formItemGroup.getOrdinal() == previous) {
            LOGGER.debug("found a match btw previous and ordinal");
            formItemGroup.setEditFlag("edit");
            formItemGroup.setOrdinal(previous + 1);
        // dbGroups.get(j).setEditFlag("edit");
        }
        // << tbh 08/2009
        if (formItemGroup.getOrdinal() > dbGroups.size() - 1) {
            formItemGroup.setEditFlag("add");
        } else {
            for (int i = 0; i < dbGroups.size(); i++) {
                DisplayItemGroupBean dbItemGroup = dbGroups.get(i);
                if (formItemGroup.getOrdinal() == i) {
                    // display, so need to insert this row, not update
                    if ("initial".equalsIgnoreCase(dbItemGroup.getEditFlag())) {
                        formItemGroup.setEditFlag("add");
                    } else {
                        dbItemGroup.setEditFlag("edit");
                        // need to set up item data id in order to update
                        for (DisplayItemBean dib : dbItemGroup.getItems()) {
                            ItemDataBean data = dib.getData();
                            for (DisplayItemBean formDib : formItemGroup.getItems()) {
                                if (formDib.getItem().getId() == dib.getItem().getId()) {
                                    formDib.getData().setId(data.getId());
                                    // this will save the data from IDE
                                    // complete, used only for DDE
                                    formDib.setDbData(dib.getData());
                                    // tbh removed below line so as not to
                                    // log so much, 112007
                                    LOGGER.debug("+++ +++ form dib get data set id " + data.getId());
                                    break;
                                }
                            }
                        }
                        formItemGroup.setEditFlag("edit");
                    }
                    // else
                    break;
                }
            }
        }
        // else
        previous = formItemGroup.getOrdinal();
    }
    LOGGER.trace("+++ === DB group row:" + dbGroups.size());
    LOGGER.trace("+++ === DB group contents: " + dbGroups.toString());
    // cannot get it.-jxu
    for (int i = 0; i < dbGroups.size(); i++) {
        DisplayItemGroupBean dbItemGroup = dbGroups.get(i);
        LOGGER.trace("+++ found edit flag of " + dbItemGroup.getEditFlag() + " for #" + dbItemGroup.getOrdinal());
        // logger.debug("+++ found edit flag of " + dbItemGroup.getEditFlag() + " for #" + dbItemGroup.getOrdinal() + ": " + i);
        if (!"edit".equalsIgnoreCase(dbItemGroup.getEditFlag()) && !"initial".equalsIgnoreCase(dbItemGroup.getEditFlag())) {
            // >> tbh if the group is not shown, we should not touch it 05/2010
            if (dbItemGroup.getGroupMetaBean().isShowGroup()) {
                LOGGER.trace("+++ one row removed, edit flag was " + dbItemGroup.getEditFlag());
                LOGGER.debug("+++ one row removed, edit flag was " + dbItemGroup.getEditFlag());
                dbItemGroup.setEditFlag("remove");
            }
        // << tbh
        }
    }
    LOGGER.debug("+++ about to return form groups: " + formGroups.toString());
    for (int j = 0; j < formGroups.size(); j++) {
        DisplayItemGroupBean formGroup = formGroups.get(j);
        formGroup.setIndex(j);
    }
    return formGroups;
}

Example 29 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class DataEntryServlet method checkGroups.

/**
     * Tries to check if a seciton has item groups
     * @param fp TODO
     * @param ecb TODO
     *
     * @return
     */
protected boolean checkGroups(FormProcessor fp, EventCRFBean ecb) {
    int sectionId = fp.getInt(INPUT_SECTION_ID, true);
    SectionDAO sdao = new SectionDAO(getDataSource());
    if (sectionId <= 0) {
        ArrayList sections = sdao.findAllByCRFVersionId(ecb.getCRFVersionId());
        for (int i = 0; i < sections.size(); i++) {
            SectionBean sb = (SectionBean) sections.get(i);
            // find the first section of this CRF
            sectionId = sb.getId();
            break;
        }
    }
    // we will look into db to see if any repeating items for this CRF
    // section
    ItemGroupDAO igdao = new ItemGroupDAO(getDataSource());
    // find any item group which doesn't equal to 'Ungrouped'
    ItemGroupBean itemGroup = igdao.findTopOneGroupBySectionId(sectionId);
    if (itemGroup != null && itemGroup.getId() > 0) {
        LOGGER.trace("This section has group");
        return true;
    }
    return false;
}

Example 30 with ItemGroupBean

use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.

the class DataEntryServlet method reshuffleErrorGroupNamesKK.

private HashMap reshuffleErrorGroupNamesKK(HashMap errors, List<DisplayItemWithGroupBean> allItems, HttpServletRequest request) {
    int manualRows = 0;
    if (errors == null || errors.size() < 1) {
        return errors;
    }
    for (int i = 0; i < allItems.size(); i++) {
        DisplayItemWithGroupBean diwb = allItems.get(i);
        if (diwb.isInGroup()) {
            List<DisplayItemGroupBean> dgbs = diwb.getItemGroups();
            for (int j = 0; j < dgbs.size(); j++) {
                DisplayItemGroupBean digb = dgbs.get(j);
                ItemGroupBean igb = digb.getItemGroupBean();
                List<DisplayItemBean> dibs = digb.getItems();
                if (j == 0) {
                    // first repeat
                    for (DisplayItemBean dib : dibs) {
                        String intendedKey = digb.getInputId() + getInputName(dib);
                        String replacementKey = digb.getItemGroupBean().getOid() + "_" + j + getInputName(dib);
                        if (!replacementKey.equals(intendedKey) && errors.containsKey(intendedKey)) {
                            // String errorMessage = (String)errors.get(intendedKey);
                            errors.put(replacementKey, errors.get(intendedKey));
                            errors.remove(intendedKey);
                            LOGGER.debug("removing: " + intendedKey + " and replacing it with " + replacementKey);
                        }
                    }
                } else {
                    // everything in between
                    manualRows++;
                    for (DisplayItemBean dib : dibs) {
                        String intendedKey = digb.getInputId() + getInputName(dib);
                        String replacementKey = digb.getItemGroupBean().getOid() + "_manual" + j + getInputName(dib);
                        if (!replacementKey.equals(intendedKey) && errors.containsKey(intendedKey)) {
                            // String errorMessage = (String)errors.get(intendedKey);
                            errors.put(replacementKey, errors.get(intendedKey));
                            errors.remove(intendedKey);
                            LOGGER.debug("removing: " + intendedKey + " and replacing it with " + replacementKey);
                        }
                    }
                }
            }
        }
    }
    request.setAttribute("manualRows", new Integer(manualRows));
    return errors;
}