use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.
the class FormBeanUtil method createGroupBeansForNongroupedItems.
/**
* This method is designed to make it easier to order grouped and nongrouped
* items on a CRF. This method generates a List of DisplayItemGroupBeans
* representing the items that are not formally part of a group-type
* horizontal table (they have a name in the database of 'Ungrouped' ). The
* DisplayItemGroupBeans are ordered according to the position of the items
* on the CRF, compared with the CRF items that are in groups. When this
* List is combined with a List of DisplayItemGroupBeans representing
* *grouped* items, the combined List can be sorted and displayed in the
* proper order on a CRF.
*
* @param allItems
* A List of the ItemFormMetadataBeans associated with the CRF.
* @param displayFormBeans
* The List of DisplayItemGroupBeans
* @param sectionId
* The section ID associated with the items
* @param dataSource
* The DataSource used to acquire the DAO-related connections
* @param nullValuesList
* The list of any "null values" associated with the items (like
* "not applicable")
* @return An ArrayList of DisplayItemGroupBeans for 'Ungrouped' items.
*/
private List<DisplayItemGroupBean> createGroupBeansForNongroupedItems(List<ItemFormMetadataBean> allItems, List<DisplayItemGroupBean> displayFormBeans, int sectionId, DataSource dataSource, List<String> nullValuesList, EventCRFBean eventCrfBean, ServletContext context) {
// This will hold the List of placeholder groupBeans for orphaned items
List<DisplayItemGroupBean> groupBeans = new ArrayList<DisplayItemGroupBean>();
// Now create a Map that maps the item to the group ordinal
// (e.g., 1) or 0 (non-group),
// as a convenient way to position an item on a CRF
// and associate an item with the ordinal of its group.
// The inner Map maps the ItemFormMetadataBean to its group ordinal;
// The Integer index to this Map represents the order of the item on the
// CRF.
SortedMap<Integer, Map<ItemFormMetadataBean, Integer>> groupMapping = new TreeMap<Integer, Map<ItemFormMetadataBean, Integer>>();
Map<ItemFormMetadataBean, Integer> innerMap;
int counter = 0;
int tmpOrdinal;
for (ItemFormMetadataBean imetaBean : allItems) {
innerMap = new HashMap<ItemFormMetadataBean, Integer>();
if (isGrouped(imetaBean, displayFormBeans)) {
tmpOrdinal = getGroupOrdinal(imetaBean, displayFormBeans);
innerMap.put(imetaBean, tmpOrdinal);
} else {
innerMap.put(imetaBean, 0);
}
groupMapping.put(++counter, innerMap);
}
// The groupMapping Map maps the index position of the item on the CRF
// form (1,2,3...) to
// the ItemFormMetadataBean and its associated group ordinal, if it has
// one
// If the ordinal is 0, then the associated ItemFormMetadataBean
// represents an
// ungrouped or orphaned item
DisplayItemGroupBean nongroupedBean;
ItemGroupBean itemGroup = new ItemGroupBean();
ItemGroupMetadataBean metaBean = new ItemGroupMetadataBean();
metaBean.setName(UNGROUPED);
List<DisplayItemBean> items;
// Now cycle through the groupMapping and create default groups or
// DisplayItemGroupBeans, in order, for
// the orphaned items.
// A DisplayItemGroupBean is only created and stored in the returned
// List
// if its contents or associated items are nongrouped.
// This int tracks the ordinal associated with each grouped item's
// associated
// DisplayItemGroupBean
// as that item is incremented
int ordinalTracker = 0;
// This int is set to the latest DisplayItemGroupBean ordinal containing
// nongrouped beans, so that it can be incremented and used to change
// the ordinal of any DisplayItemGroupBeans (containing *grouped* items)
// that follow this bean on the CRF
// int nonGroupOrdinal=0;
Map.Entry<Integer, Map<ItemFormMetadataBean, Integer>> entry;
Map<ItemFormMetadataBean, Integer> beanMap;
nongroupedBean = new DisplayItemGroupBean();
ItemFormMetadataBean tempItemMeta;
int tempOrdinal;
// a flag indicating that the last item handled was an orphaned one
// so that if the next item is grouped, that's a signal to store the
// new itemgroupbean just created for orphaned items in in the
// itemgroupbean List.
boolean isOrphaned = false;
// any of the orphaned items
for (Iterator<Map.Entry<Integer, Map<ItemFormMetadataBean, Integer>>> iter = groupMapping.entrySet().iterator(); iter.hasNext(); ) {
entry = iter.next();
// the ItemFormMetadataBean and any
beanMap = entry.getValue();
// group ordinal
// the
tempItemMeta = beanMap.keySet().iterator().next();
// ItemFormMetadataBean
// If this value is 0, the item is orphaned; if > 0 the item is
// grouped
// and doesn't need a new itemgroupbean
tempOrdinal = beanMap.get(tempItemMeta);
// ordinalTracker != 0
if (tempOrdinal == 0) {
if (ordinalTracker == 0 || !isOrphaned) {
// initialize a new group for the item
nongroupedBean = new DisplayItemGroupBean();
itemGroup = new ItemGroupBean();
itemGroup.setName(UNGROUPED);
nongroupedBean.setItemGroupBean(itemGroup);
// set this flag, so that if the next item is orphaned, then
// the code can place it in the existing itemgroupbean
isOrphaned = true;
ordinalTracker++;
nongroupedBean.setOrdinal(ordinalTracker);
// nonGroupOrdinal=nongroupedBean.getOrdinal();
// nonGroupOrdinal= ordinalTracker;
}
// Add the item as a displayitem to the itemgroupbean
nongroupedBean.getItems().add(getDisplayBeanFromSingleItem(tempItemMeta, sectionId, dataSource, eventCrfBean, nullValuesList, context));
} else {
// been created; therefore, store it in the List.
if (isOrphaned) {
groupBeans.add(nongroupedBean);
// We also know that the ordinal has changed, because a
// nongroupedBean
// has been created
ordinalTracker++;
incrementOrdinal(tempItemMeta, displayFormBeans, ordinalTracker);
} else {
ordinalTracker = getGroupOrdinal(tempItemMeta, displayFormBeans);
}
isOrphaned = false;
}
}
// is leftover and must be added to the List
if (isOrphaned) {
groupBeans.add(nongroupedBean);
}
return groupBeans;
}
use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.
the class FormBeanUtil method createDisplaySectionWithItemGroups.
/**
* Create a DisplaySectionBean with a list of ItemGroupBeans. NOTE:
* unGrouped Items are not included
*
* @param study
* The StudyBean
* @param sectionId
* The Section ID associated with the Items, which end up
* providing the content of the tables.
* @param crfVersionId
* The CRF version ID associated with the Items.
* @param studyEventId
* The Study Event ID associated with the CRF Version ID.
* @param sm
* A SessionManager, from which DataSources are acquired for the
* DAO objects.
* @return A DisplaySectionBean.
*/
public DisplaySectionBean createDisplaySectionWithItemGroups(StudyBean study, int sectionId, EventCRFBean eventCrfBean, int studyEventId, SessionManager sm, int eventDefinitionCRFId, ServletContext context) {
DisplaySectionBean dBean = new DisplaySectionBean();
ItemGroupDAO formGroupDAO = new ItemGroupDAO(sm.getDataSource());
ItemGroupMetadataDAO igMetaDAO = new ItemGroupMetadataDAO(sm.getDataSource());
ItemDAO itemDao = new ItemDAO(sm.getDataSource());
ItemFormMetadataDAO metaDao = new ItemFormMetadataDAO(sm.getDataSource());
List<ItemGroupBean> arrList = formGroupDAO.findLegitGroupBySectionId(sectionId);
// all items associated with the section, including those not in a group
List<ItemFormMetadataBean> allMetas = new ArrayList<ItemFormMetadataBean>();
try {
allMetas = metaDao.findAllBySectionId(sectionId);
} catch (OpenClinicaException oce) {
logger.info("oce.getOpenClinicaMessage() = " + oce.getOpenClinicaMessage());
}
// Collections.sort(allMetas);
if (arrList.isEmpty())
return dBean;
// Find out whether there are any checkboxes/radios/select elements
// and if so, get any null values
// associated with them
List<String> nullValuesList = new ArrayList<String>();
boolean itemsHaveChecksRadios = itemsIncludeChecksRadiosSelects(allMetas);
// "+eventDefinitionCRFId);
if (eventDefinitionCRFId <= 0) {
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
EventDefinitionCRFBean edcBean = edcdao.findByStudyEventIdAndCRFVersionId(study, studyEventId, eventCrfBean.getCRFVersionId());
eventDefinitionCRFId = edcBean.getId();
}
// "+eventDefinitionCRFId);
if (itemsHaveChecksRadios && eventDefinitionCRFId > 0) {
// method returns null values as a List<String>
nullValuesList = this.getNullValuesByEventCRFDefId(eventDefinitionCRFId, sm.getDataSource());
}
// Get the items associated with each group
List<ItemBean> itBeans;
List<DisplayItemBean> displayItems;
List<DisplayItemGroupBean> displayFormBeans = new ArrayList<DisplayItemGroupBean>();
DisplayItemGroupBean displayItemGBean;
for (ItemGroupBean itemGroup : arrList) {
itBeans = itemDao.findAllItemsByGroupId(itemGroup.getId(), eventCrfBean.getCRFVersionId());
List<ItemGroupMetadataBean> metadata = igMetaDAO.findMetaByGroupAndSection(itemGroup.getId(), eventCrfBean.getCRFVersionId(), sectionId);
if (!metadata.isEmpty()) {
// for a given crf version, all the items in the same group
// have the same group metadata
// so we can get one of them and set metadata for the group
ItemGroupMetadataBean meta = metadata.get(0);
itemGroup.setMeta(meta);
}
// include arrayList parameter until I determine difference in
// classes
displayItems = getDisplayBeansFromItems(itBeans, sm.getDataSource(), eventCrfBean, sectionId, nullValuesList, context);
displayItemGBean = this.createDisplayFormGroup(displayItems, itemGroup);
displayFormBeans.add(displayItemGBean);
}
// We still have to sort these display item group beans on their
// ItemGroupMetadataBean?
// then number their ordinals accordingly
Collections.sort(displayFormBeans, new Comparator<DisplayItemGroupBean>() {
public int compare(DisplayItemGroupBean displayItemGroupBean, DisplayItemGroupBean displayItemGroupBean1) {
return displayItemGroupBean.getGroupMetaBean().compareTo(displayItemGroupBean1.getGroupMetaBean());
}
});
// Now provide the display item group beans with an ordinal
int digOrdinal = 0;
for (DisplayItemGroupBean digBean : displayFormBeans) {
digBean.setOrdinal(++digOrdinal);
}
dBean.setDisplayFormGroups(displayFormBeans);
return dBean;
}
use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.
the class FormBeanUtil method createDisplaySectionBWithFormGroups.
/**
* Create a DisplaySectionBean with a list of ItemGroupBeans. This List will
* include any ItemGroupBeans that are associated with ungrouped items; in
* other words, the DisplaySectionBean will represent a section that has
* both ungrouped and grouped tables.
*
* @param sectionId
* The Section ID associated with the Items, which end up
* providing the content of the tables.
* @param crfVersionId
* The CRF version ID associated with the Items.
* @param dataSource
* @param eventCRFDefId
* The id for the Event CRF Definition.
* @return A DisplaySectionBean with sorted ItemGroupBeans, meaning the
* ItemGroupBeans should be listed in the order that they appear on
* the CRF section.
* @return A DisplaySectionBean representing a CRF section.
*/
public DisplaySectionBean createDisplaySectionBWithFormGroups(int sectionId, int crfVersionId, DataSource dataSource, int eventCRFDefId, EventCRFBean eventCrfBean, ServletContext context) {
DisplaySectionBean displaySectionBean = new DisplaySectionBean();
ItemGroupDAO formGroupDAO = new ItemGroupDAO(dataSource);
ItemGroupMetadataDAO igMetaDAO = new ItemGroupMetadataDAO(dataSource);
ItemDAO itemDao = new ItemDAO(dataSource);
ItemFormMetadataDAO metaDao = new ItemFormMetadataDAO(dataSource);
SectionDAO sectionDao = new SectionDAO(dataSource);
// Give the DisplaySectionBean a legitimate SectionBean
SectionBean secBean = (SectionBean) sectionDao.findByPK(sectionId);
displaySectionBean.setSection(secBean);
// changed from: findGroupBySectionId
List<ItemGroupBean> itemGroupBeans = formGroupDAO.findLegitGroupAllBySectionId(sectionId);
// all items associated with the section, including those not in a group
List<ItemFormMetadataBean> allMetas = new ArrayList<ItemFormMetadataBean>();
try {
allMetas = metaDao.findAllBySectionId(sectionId);
} catch (OpenClinicaException oce) {
logger.info("oce.getOpenClinicaMessage() = " + oce.getOpenClinicaMessage());
}
// Sort these items according to their position on the CRF; their
// ordinal
Collections.sort(allMetas);
// The DisplayItemGroupBean(s) for "nongrouped" items
List<DisplayItemGroupBean> nonGroupBeans = null;
// if(itemGroupBeans.isEmpty()) return displaySectionBean;
// Find out whether there are any checkboxes/radios/select elements
// and if so, get any null values
// associated with them
List<String> nullValuesList = new ArrayList<String>();
boolean itemsHaveChecksRadios = itemsIncludeChecksRadiosSelects(allMetas);
if (itemsHaveChecksRadios && eventCRFDefId > 0) {
// method returns null values as a List<String>
nullValuesList = this.getNullValuesByEventCRFDefId(eventCRFDefId, dataSource);
}
// Get the items associated with each group
List<ItemBean> itBeans;
List<DisplayItemBean> displayItems;
List<DisplayItemGroupBean> displayFormBeans = new ArrayList<DisplayItemGroupBean>();
DisplayItemGroupBean displayItemGBean;
for (ItemGroupBean itemGroup : itemGroupBeans) {
itBeans = itemDao.findAllItemsByGroupId(itemGroup.getId(), crfVersionId);
logger.debug("just ran find all by group id " + itemGroup.getId() + " found " + itBeans.size() + " item beans");
List<ItemGroupMetadataBean> metadata = igMetaDAO.findMetaByGroupAndSection(itemGroup.getId(), crfVersionId, sectionId);
if (!metadata.isEmpty()) {
// for a given crf version, all the items in the same group
// have the same group metadata info
// so we can get one of the metadata and set the metadata for
// the group
ItemGroupMetadataBean meta = metadata.get(0);
itemGroup.setMeta(meta);
}
displayItems = getDisplayBeansFromItems(itBeans, dataSource, eventCrfBean, sectionId, nullValuesList, context);
displayItemGBean = this.createDisplayFormGroup(displayItems, itemGroup);
displayFormBeans.add(displayItemGBean);
}
// We still have to sort these display item group beans on their
// ItemGroupMetadataBean?
// then number their ordinals accordingly
Collections.sort(displayFormBeans, new Comparator<DisplayItemGroupBean>() {
public int compare(DisplayItemGroupBean displayItemGroupBean, DisplayItemGroupBean displayItemGroupBean1) {
return displayItemGroupBean.getGroupMetaBean().compareTo(displayItemGroupBean1.getGroupMetaBean());
}
});
// Now provide the display item group beans with an ordinal
int digOrdinal = 0;
for (DisplayItemGroupBean digBean : displayFormBeans) {
digBean.setOrdinal(++digOrdinal);
}
// find out whether there are any ungrouped items by comparing the
// number of
// grouped items to allMetas.size()
// List<DisplayItemGroupBean> nonGroupBeans=null;
int tempCount = 0;
for (DisplayItemGroupBean groupBean : displayFormBeans) {
tempCount += groupBean.getItems().size();
}
if (tempCount < allMetas.size()) {
nonGroupBeans = createGroupBeansForNongroupedItems(allMetas, displayFormBeans, sectionId, dataSource, nullValuesList, eventCrfBean, context);
}
if (nonGroupBeans != null) {
displayFormBeans.addAll(nonGroupBeans);
}
// sort the list according to the ordinal of the contained
// DisplayItemGroupBeans
Collections.sort(displayFormBeans, new Comparator<DisplayItemGroupBean>() {
public int compare(DisplayItemGroupBean disFormGroupBean, DisplayItemGroupBean disFormGroupBean1) {
Integer compInt = disFormGroupBean1.getOrdinal();
Integer compInt2 = disFormGroupBean.getOrdinal();
return compInt2.compareTo(compInt);
}
});
displaySectionBean.setDisplayFormGroups(displayFormBeans);
return displaySectionBean;
}
use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.
the class FormBeanUtil method createDisplaySectionBeanWithItemGroups.
/**
* Create a DisplaySectionBean with a list of FormGroupBeans.
*
* @param crfVersionId
* The CRF version ID associated with the Items.
* @param sectionBean
* The SectionBean with an ID associated with the Items, which
* end up providing the content of the tables.
* @param sm
* A SessionManager, from which DataSources are acquired for the
* DAO objects.
* @return A DisplaySectionBean.
*/
public DisplaySectionBean createDisplaySectionBeanWithItemGroups(int sectionId, EventCRFBean eventCrfBean, SectionBean sectionBean, SessionManager sm, ServletContext context) {
DisplaySectionBean dBean = new DisplaySectionBean();
ItemGroupDAO formGroupDAO = new ItemGroupDAO(sm.getDataSource());
ItemGroupMetadataDAO igMetaDAO = new ItemGroupMetadataDAO(sm.getDataSource());
ItemDAO itemDao = new ItemDAO(sm.getDataSource());
// Get all items associated with this crfVersion ID; divide them up into
// items with a group, and those without a group.
// get all items associated with a section id, then split them up into
// grouped
// and non-grouped items
List<ItemBean> allItems = itemDao.findAllParentsBySectionId(sectionId);
// Get a List of FormGroupBeans for each group associated with
// this crfVersionId.
// List<ItemGroupBean> arrList =
// formGroupDAO.findGroupByCRFVersionIDMap(crfVersionId);
List<ItemGroupBean> arrList = formGroupDAO.findLegitGroupBySectionId(sectionId);
if (arrList.isEmpty())
return dBean;
// Get the items associated with each group
List<ItemBean> itBeans;
List<DisplayItemBean> displayItems;
List<DisplayItemGroupBean> displayFormBeans = new ArrayList<DisplayItemGroupBean>();
DisplayItemGroupBean displayFormGBean;
for (ItemGroupBean itemGroup : arrList) {
itBeans = itemDao.findAllItemsByGroupId(itemGroup.getId(), eventCrfBean.getCRFVersionId());
List<ItemGroupMetadataBean> metadata = igMetaDAO.findMetaByGroupAndSection(itemGroup.getId(), eventCrfBean.getCRFVersionId(), sectionId);
// this requirement
if (!metadata.isEmpty()) {
// for a given crf version, all the items in the same group have
// the same group metadata
// so we can get one of them and set metadata for the group
ItemGroupMetadataBean meta = metadata.get(0);
itemGroup.setMeta(meta);
}
// TODO: the last arg is a list of null value strings
displayItems = getDisplayBeansFromItems(itBeans, sm.getDataSource(), eventCrfBean, sectionBean.getId(), null, context);
displayFormGBean = this.createDisplayFormGroup(displayItems, itemGroup);
displayFormBeans.add(displayFormGBean);
}
// sort the list according to the ordinal of the contained
// FormGroupBeans
Collections.sort(displayFormBeans, new Comparator<DisplayItemGroupBean>() {
public int compare(DisplayItemGroupBean disFormGroupBean, DisplayItemGroupBean disFormGroupBean1) {
return disFormGroupBean.getGroupMetaBean().getOrdinal().compareTo(disFormGroupBean1.getGroupMetaBean().getOrdinal());
}
});
dBean.setDisplayFormGroups(displayFormBeans);
return dBean;
}
use of org.akaza.openclinica.bean.submit.ItemGroupBean in project OpenClinica by OpenClinica.
the class ImportCRFDataService method validateStudyMetadata.
/*
* meant to answer the following questions 3.a. is that study subject in that study? 3.b. is that study event def in
* that study? 3.c. is that site in that study? 3.d. is that crf version in that study event def? 3.e. are those
* item groups in that crf version? 3.f. are those items in that item group?
*/
public List<String> validateStudyMetadata(ODMContainer odmContainer, int currentStudyId) {
List<String> errors = new ArrayList<String>();
MessageFormat mf = new MessageFormat("");
// throw new OpenClinicaException(mf.format(arguments), "");
try {
StudyDAO studyDAO = new StudyDAO(ds);
String studyOid = odmContainer.getCrfDataPostImportContainer().getStudyOID();
StudyBean studyBean = studyDAO.findByOid(studyOid);
if (studyBean == null) {
mf.applyPattern(respage.getString("your_study_oid_does_not_reference_an_existing"));
Object[] arguments = { studyOid };
errors.add(mf.format(arguments));
// errors.add("Your Study OID " + studyOid + " does not
// reference an existing Study or Site in the database. Please
// check it and try again.");
// throw an error here because getting the ID would be difficult
// otherwise
logger.debug("unknown study OID");
throw new OpenClinicaException("Unknown Study OID", "");
} else if (studyBean.getId() != currentStudyId) {
mf.applyPattern(respage.getString("your_current_study_is_not_the_same_as"));
Object[] arguments = { studyBean.getName() };
//
// errors.add("Your current study is not the same as the Study "
// + studyBean.getName()
// + ", for which you are trying to enter data. Please log out
// of your current study and into the study for which the data
// is keyed.");
errors.add(mf.format(arguments));
}
ArrayList<SubjectDataBean> subjectDataBeans = odmContainer.getCrfDataPostImportContainer().getSubjectData();
StudySubjectDAO studySubjectDAO = new StudySubjectDAO(ds);
StudyEventDefinitionDAO studyEventDefinitionDAO = new StudyEventDefinitionDAO(ds);
CRFVersionDAO crfVersionDAO = new CRFVersionDAO(ds);
ItemGroupDAO itemGroupDAO = new ItemGroupDAO(ds);
ItemDAO itemDAO = new ItemDAO(ds);
if (subjectDataBeans != null) {
// report all available errors, tbh
for (SubjectDataBean subjectDataBean : subjectDataBeans) {
String oid = subjectDataBean.getSubjectOID();
StudySubjectBean studySubjectBean = studySubjectDAO.findByOidAndStudy(oid, studyBean.getId());
if (studySubjectBean == null) {
mf.applyPattern(respage.getString("your_subject_oid_does_not_reference"));
Object[] arguments = { oid };
errors.add(mf.format(arguments));
// errors.add("Your Subject OID " + oid + " does not
// reference an existing Subject in the Study.");
logger.debug("logged an error with subject oid " + oid);
}
ArrayList<StudyEventDataBean> studyEventDataBeans = subjectDataBean.getStudyEventData();
if (studyEventDataBeans != null) {
for (StudyEventDataBean studyEventDataBean : studyEventDataBeans) {
String sedOid = studyEventDataBean.getStudyEventOID();
StudyEventDefinitionBean studyEventDefintionBean = studyEventDefinitionDAO.findByOidAndStudy(sedOid, studyBean.getId(), studyBean.getParentStudyId());
if (studyEventDefintionBean == null) {
mf.applyPattern(respage.getString("your_study_event_oid_for_subject_oid"));
Object[] arguments = { sedOid, oid };
errors.add(mf.format(arguments));
// errors.add("Your Study Event OID " + sedOid +
// " for Subject OID " + oid
// + " does not reference an existing Study
// Event in the Study.");
logger.debug("logged an error with se oid " + sedOid + " and subject oid " + oid);
}
ArrayList<FormDataBean> formDataBeans = studyEventDataBean.getFormData();
if (formDataBeans != null) {
for (FormDataBean formDataBean : formDataBeans) {
String formOid = formDataBean.getFormOID();
ArrayList<CRFVersionBean> crfVersionBeans = crfVersionDAO.findAllByOid(formOid);
// right now just check nulls
if (crfVersionBeans != null) {
for (CRFVersionBean crfVersionBean : crfVersionBeans) {
if (crfVersionBean == null) {
mf.applyPattern(respage.getString("your_crf_version_oid_for_study_event_oid"));
Object[] arguments = { formOid, sedOid };
errors.add(mf.format(arguments));
// errors.add("Your CRF Version
// OID " + formOid + " for Study
// Event OID " + sedOid
// + " does not reference a
// proper CRF Version in that
// Study Event.");
logger.debug("logged an error with form " + formOid + " and se oid " + sedOid);
}
}
} else {
mf.applyPattern(respage.getString("your_crf_version_oid_did_not_generate"));
Object[] arguments = { formOid };
errors.add(mf.format(arguments));
// errors.add("Your CRF Version OID " +
// formOid
// + " did not generate any results in
// the database. Please check it and try
// again.");
}
ArrayList<ImportItemGroupDataBean> itemGroupDataBeans = formDataBean.getItemGroupData();
if (itemGroupDataBeans != null) {
for (ImportItemGroupDataBean itemGroupDataBean : itemGroupDataBeans) {
String itemGroupOID = itemGroupDataBean.getItemGroupOID();
List<ItemGroupBean> itemGroupBeans = itemGroupDAO.findAllByOid(itemGroupOID);
if (itemGroupBeans != null) {
logger.debug("number of item group beans: " + itemGroupBeans.size());
logger.debug("item group oid: " + itemGroupOID);
for (ItemGroupBean itemGroupBean : itemGroupBeans) {
if (itemGroupBean == null) {
mf.applyPattern(respage.getString("your_item_group_oid_for_form_oid"));
Object[] arguments = { itemGroupOID, formOid };
errors.add(mf.format(arguments));
// errors.add("Your Item
// Group OID " +
// itemGroupOID + " for
// Form OID " + formOid
// + " does not
// reference a proper
// Item Group in that
// CRF Version.");
}
}
} else {
mf.applyPattern(respage.getString("the_item_group_oid_did_not"));
Object[] arguments = { itemGroupOID };
errors.add(mf.format(arguments));
// errors.add("The Item Group
// OID " + itemGroupOID
// + " did not generate any
// results in the database,
// please check it and try
// again.");
}
ArrayList<ImportItemDataBean> itemDataBeans = itemGroupDataBean.getItemData();
if (itemDataBeans != null) {
for (ImportItemDataBean itemDataBean : itemDataBeans) {
String itemOID = itemDataBean.getItemOID();
List<ItemBean> itemBeans = itemDAO.findByOid(itemOID);
if (itemBeans != null) {
logger.debug("found itembeans: ");
for (ItemBean itemBean : itemBeans) {
if (itemBean == null) {
mf.applyPattern(respage.getString("your_item_oid_for_item_group_oid"));
Object[] arguments = { itemOID, itemGroupOID };
errors.add(mf.format(arguments));
// errors.add(
// "Your
// Item OID " +
// itemOID + "
// for Item
// Group OID " +
// itemGroupOID
// + " does not
// reference a
// proper Item
// in the Item
// Group.");
} else {
logger.debug("found " + itemBean.getOid() + ", passing");
}
}
}
}
} else {
mf.applyPattern(respage.getString("the_item_group_oid_did_not_contain_item_data"));
Object[] arguments = { itemGroupOID };
errors.add(mf.format(arguments));
// errors.add("The Item Group
// OID " + itemGroupOID
// + " did not contain any Item
// Data in the XML file, please
// check it and try again.");
}
}
} else {
mf.applyPattern(respage.getString("your_study_event_contains_no_form_data"));
Object[] arguments = { sedOid };
errors.add(mf.format(arguments));
// errors.add("Your Study Event " +
// sedOid
// + " contains no Form Data, or the
// Form OIDs are incorrect. Please check
// it and try again.");
}
}
}
}
}
}
}
} catch (OpenClinicaException oce) {
} catch (NullPointerException npe) {
logger.debug("found a nullpointer here");
}
// if errors == null you pass, if not you fail
return errors;
}
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