Examples with Transform org.baderlab.csplugins.enrichmentmap.view.heatmap.HeatMapParams.Transform used on opensource projects

Example 1 with Transform

use of org.baderlab.csplugins.enrichmentmap.view.heatmap.HeatMapParams.Transform in project EnrichmentMapApp by BaderLab.

the class HeatMapMainPanel method createToolbarPanel.

private JPanel createToolbarPanel() {
    gradientLegendPanel = new GradientLegendPanel(table);
    showValuesCheck = new JCheckBox("Show Values");
    JLabel operatorLabel = new JLabel("Genes:");
    operatorCombo = new JComboBox<>();
    JLabel normLabel = new JLabel("Expressions:");
    normCombo = new JComboBox<>();
    SwingUtil.makeSmall(operatorLabel, operatorCombo, normLabel, normCombo, showValuesCheck);
    operatorCombo.addItem(new ComboItem<>(Operator.UNION, "Union"));
    operatorCombo.addItem(new ComboItem<>(Operator.INTERSECTION, "Intersection"));
    operatorCombo.setSelectedItem(ComboItem.of(Operator.UNION));
    normCombo.addItem(new ComboItem<>(Transform.AS_IS, "Expression Values"));
    normCombo.addItem(new ComboItem<>(Transform.ROW_NORMALIZE, "Row Normalize"));
    normCombo.addItem(new ComboItem<>(Transform.LOG_TRANSFORM, "Log Transform"));
    normCombo.addItem(new ComboItem<>(Transform.COMPRESS_MEDIAN, "Compress (Median)"));
    normCombo.addItem(new ComboItem<>(Transform.COMPRESS_MIN, "Compress (Min)"));
    normCombo.addItem(new ComboItem<>(Transform.COMPRESS_MAX, "Compress (Max)"));
    normCombo.setSelectedItem(ComboItem.of(Transform.COMPRESS_MEDIAN));
    operatorCombo.addActionListener(operatorActionListener = e -> updateSetting_Operator(getOperator()));
    normCombo.addActionListener(normActionListener = e -> updateSetting_Transform(getTransform()));
    showValuesCheck.addActionListener(showValueActionListener = e -> updateSetting_ShowValues(isShowValues()));
    JButton plusButton = SwingUtil.createIconButton(iconManager, IconManager.ICON_PLUS, "Add Rankings...");
    JButton gearButton = SwingUtil.createIconButton(iconManager, IconManager.ICON_GEAR, "Settings");
    JButton menuButton = SwingUtil.createIconButton(iconManager, IconManager.ICON_EXTERNAL_LINK, "Export");
    LookAndFeelUtil.equalizeSize(gearButton, menuButton);
    plusButton.addActionListener(e -> addRankings());
    gearButton.addActionListener(e -> settingsPanel.popup(gearButton));
    menuButton.addActionListener(this::showExportMenu);
    JPanel panel = new JPanel();
    GroupLayout layout = new GroupLayout(panel);
    panel.setLayout(layout);
    layout.setAutoCreateContainerGaps(false);
    layout.setAutoCreateGaps(!LookAndFeelUtil.isAquaLAF());
    layout.setHorizontalGroup(layout.createSequentialGroup().addComponent(gradientLegendPanel, 180, 180, 180).addGap(0, 0, Short.MAX_VALUE).addComponent(operatorLabel).addComponent(operatorCombo, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addGap(5).addComponent(normLabel).addComponent(normCombo, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addGap(5).addComponent(showValuesCheck).addGap(5).addComponent(plusButton).addComponent(gearButton).addComponent(menuButton));
    layout.setVerticalGroup(layout.createParallelGroup(Alignment.BASELINE).addComponent(gradientLegendPanel).addComponent(operatorLabel).addComponent(operatorCombo).addComponent(normLabel).addComponent(normCombo).addComponent(showValuesCheck).addComponent(plusButton).addComponent(gearButton).addComponent(menuButton));
    panel.setOpaque(false);
    return panel;
}

Example 2 with Transform

use of org.baderlab.csplugins.enrichmentmap.view.heatmap.HeatMapParams.Transform in project EnrichmentMapApp by BaderLab.

the class ColorRenderer method getTableCellRendererComponent.

public JLabel getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int col) {
    JLabel label = new JLabel();
    //MUST do this for background to show up.
    label.setOpaque(true);
    HeatMapTableModel model = (HeatMapTableModel) table.getModel();
    EMDataSet dataset = model.getDataSet(col);
    Transform transform = model.getTransform();
    DataSetColorRange range = getRange(dataset, transform);
    if (value instanceof Double) {
        Color color = getColor(range.getTheme(), range.getRange(), (Double) value);
        label.setBackground(color);
        Border border = BorderFactory.createMatteBorder(1, 1, 1, 1, isSelected ? table.getSelectionForeground() : color);
        label.setBorder(border);
        if (Double.isFinite((Double) value))
            label.setToolTipText(value.toString());
    }
    return label;
}