Examples with ComboItem org.baderlab.csplugins.enrichmentmap.view.util.ComboItem used on opensource projects

Example 1 with ComboItem

use of org.baderlab.csplugins.enrichmentmap.view.util.ComboItem in project EnrichmentMapApp by BaderLab.

the class HeatMapMainPanel method createToolbarPanel.

private JPanel createToolbarPanel() {
    gradientLegendPanel = new GradientLegendPanel(table);
    showValuesCheck = new JCheckBox("Show Values");
    JLabel operatorLabel = new JLabel("Genes:");
    operatorCombo = new JComboBox<>();
    JLabel normLabel = new JLabel("Expressions:");
    normCombo = new JComboBox<>();
    SwingUtil.makeSmall(operatorLabel, operatorCombo, normLabel, normCombo, showValuesCheck);
    operatorCombo.addItem(new ComboItem<>(Operator.UNION, "Union"));
    operatorCombo.addItem(new ComboItem<>(Operator.INTERSECTION, "Intersection"));
    operatorCombo.setSelectedItem(ComboItem.of(Operator.UNION));
    normCombo.addItem(new ComboItem<>(Transform.AS_IS, "Expression Values"));
    normCombo.addItem(new ComboItem<>(Transform.ROW_NORMALIZE, "Row Normalize"));
    normCombo.addItem(new ComboItem<>(Transform.LOG_TRANSFORM, "Log Transform"));
    normCombo.addItem(new ComboItem<>(Transform.COMPRESS_MEDIAN, "Compress (Median)"));
    normCombo.addItem(new ComboItem<>(Transform.COMPRESS_MIN, "Compress (Min)"));
    normCombo.addItem(new ComboItem<>(Transform.COMPRESS_MAX, "Compress (Max)"));
    normCombo.setSelectedItem(ComboItem.of(Transform.COMPRESS_MEDIAN));
    operatorCombo.addActionListener(operatorActionListener = e -> updateSetting_Operator(getOperator()));
    normCombo.addActionListener(normActionListener = e -> updateSetting_Transform(getTransform()));
    showValuesCheck.addActionListener(showValueActionListener = e -> updateSetting_ShowValues(isShowValues()));
    JButton plusButton = SwingUtil.createIconButton(iconManager, IconManager.ICON_PLUS, "Add Rankings...");
    JButton gearButton = SwingUtil.createIconButton(iconManager, IconManager.ICON_GEAR, "Settings");
    JButton menuButton = SwingUtil.createIconButton(iconManager, IconManager.ICON_EXTERNAL_LINK, "Export");
    LookAndFeelUtil.equalizeSize(gearButton, menuButton);
    plusButton.addActionListener(e -> addRankings());
    gearButton.addActionListener(e -> settingsPanel.popup(gearButton));
    menuButton.addActionListener(this::showExportMenu);
    JPanel panel = new JPanel();
    GroupLayout layout = new GroupLayout(panel);
    panel.setLayout(layout);
    layout.setAutoCreateContainerGaps(false);
    layout.setAutoCreateGaps(!LookAndFeelUtil.isAquaLAF());
    layout.setHorizontalGroup(layout.createSequentialGroup().addComponent(gradientLegendPanel, 180, 180, 180).addGap(0, 0, Short.MAX_VALUE).addComponent(operatorLabel).addComponent(operatorCombo, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addGap(5).addComponent(normLabel).addComponent(normCombo, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addGap(5).addComponent(showValuesCheck).addGap(5).addComponent(plusButton).addComponent(gearButton).addComponent(menuButton));
    layout.setVerticalGroup(layout.createParallelGroup(Alignment.BASELINE).addComponent(gradientLegendPanel).addComponent(operatorLabel).addComponent(operatorCombo).addComponent(normLabel).addComponent(normCombo).addComponent(showValuesCheck).addComponent(plusButton).addComponent(gearButton).addComponent(menuButton));
    panel.setOpaque(false);
    return panel;
}

Example 2 with ComboItem

use of org.baderlab.csplugins.enrichmentmap.view.util.ComboItem in project EnrichmentMapApp by BaderLab.

the class CutoffPropertiesPanel method createFilterEdgesPanel.

private JPanel createFilterEdgesPanel() {
    JPanel panel = new JPanel();
    panel.setBorder(LookAndFeelUtil.createTitledBorder("Similarity Filtering (Edges)"));
    JLabel cutoffLabel = new JLabel("Cutoff:");
    JLabel metricLabel = new JLabel("Metric:");
    SwingUtil.makeSmall(cutoffLabel, metricLabel);
    SimilarityMetric defaultMetric = propertyManager.getDefaultSimilarityMetric();
    double defaultCutoff = propertyManager.getDefaultCutOff(defaultMetric);
    similarityCutoffText = new JFormattedTextField(getFormatterFactory(false));
    similarityCutoffText.setValue(defaultCutoff);
    cutoffMetricCombo = new JComboBox<>();
    cutoffMetricCombo.addItem(new ComboItem<>(SimilarityMetric.JACCARD, "Jaccard"));
    cutoffMetricCombo.addItem(new ComboItem<>(SimilarityMetric.OVERLAP, "Overlap"));
    cutoffMetricCombo.addItem(new ComboItem<>(SimilarityMetric.COMBINED, "Jaccard+Overlap Combined"));
    SwingUtil.makeSmall(similarityCutoffText, cutoffMetricCombo);
    ActionListener sliderUpdate = e -> {
        SimilarityMetric type = getSimilarityMetric();
        similarityCutoffText.setValue(cutoffValues.get(type));
        combinedConstantSlider.setVisible(type == SimilarityMetric.COMBINED);
    };
    double combinedConstant = propertyManager.getDefaultCombinedConstant();
    int tick = (int) (combinedConstant * 100.0);
    combinedConstantSlider = new CombinedConstantSlider(tick);
    combinedConstantSlider.setOpaque(false);
    // default
    cutoffMetricCombo.setSelectedItem(ComboItem.of(defaultMetric));
    cutoffMetricCombo.addActionListener(sliderUpdate);
    similarityCutoffText.addPropertyChangeListener("value", e -> {
        double value = ((Number) e.getNewValue()).doubleValue();
        cutoffValues.put(getSimilarityMetric(), value);
    });
    sliderUpdate.actionPerformed(null);
    final GroupLayout layout = new GroupLayout(panel);
    panel.setLayout(layout);
    layout.setAutoCreateContainerGaps(true);
    layout.setAutoCreateGaps(true);
    layout.setHorizontalGroup(layout.createSequentialGroup().addGroup(layout.createParallelGroup().addComponent(cutoffLabel).addComponent(metricLabel)).addGroup(layout.createParallelGroup().addComponent(similarityCutoffText, PREFERRED_SIZE, 100, PREFERRED_SIZE).addComponent(cutoffMetricCombo, PREFERRED_SIZE, PREFERRED_SIZE, PREFERRED_SIZE).addComponent(combinedConstantSlider, PREFERRED_SIZE, PREFERRED_SIZE, PREFERRED_SIZE)).addGap(0, 0, Short.MAX_VALUE));
    layout.setVerticalGroup(layout.createSequentialGroup().addGroup(layout.createParallelGroup(Alignment.BASELINE).addComponent(cutoffLabel).addComponent(similarityCutoffText)).addGroup(layout.createParallelGroup(Alignment.BASELINE).addComponent(metricLabel).addComponent(cutoffMetricCombo)).addComponent(combinedConstantSlider, PREFERRED_SIZE, PREFERRED_SIZE, PREFERRED_SIZE).addGap(0, 0, Short.MAX_VALUE));
    if (LookAndFeelUtil.isAquaLAF())
        panel.setOpaque(false);
    return panel;
}