Examples with IndexOf org.hl7.elm.r1.IndexOf used on opensource projects

Example 16 with IndexOf

use of org.hl7.elm.r1.IndexOf in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method getChildList.

public List<ElementDefinition> getChildList(StructureDefinition profile, String path, String id, boolean diff, boolean refs) {
    List<ElementDefinition> res = new ArrayList<ElementDefinition>();
    boolean capturing = id == null;
    if (id == null && !path.contains("."))
        capturing = true;
    List<ElementDefinition> list = diff ? profile.getDifferential().getElement() : profile.getSnapshot().getElement();
    for (ElementDefinition e : list) {
        if (e == null)
            throw new Error(context.formatMessage(I18nConstants.ELEMENT__NULL_, profile.getUrl()));
        if (e.getId() == null)
            throw new Error(context.formatMessage(I18nConstants.ELEMENT_ID__NULL__ON_, e.toString(), profile.getUrl()));
        if (!capturing && id != null && e.getId().equals(id)) {
            capturing = true;
        }
        // If our element is a slice, stop capturing children as soon as we see the next slice
        if (capturing && e.hasId() && id != null && !e.getId().equals(id) && e.getPath().equals(path))
            break;
        if (capturing) {
            String p = e.getPath();
            if (refs && !Utilities.noString(e.getContentReference()) && path.startsWith(p)) {
                if (path.length() > p.length()) {
                    return getChildList(profile, e.getContentReference() + "." + path.substring(p.length() + 1), null, diff);
                } else if (e.getContentReference().startsWith("#")) {
                    return getChildList(profile, e.getContentReference().substring(1), null, diff);
                } else if (e.getContentReference().contains("#")) {
                    String url = e.getContentReference().substring(0, e.getContentReference().indexOf("#"));
                    StructureDefinition sd = context.fetchResource(StructureDefinition.class, url);
                    if (sd == null) {
                        throw new DefinitionException("Unable to find Structure " + url);
                    }
                    return getChildList(sd, e.getContentReference().substring(e.getContentReference().indexOf("#") + 1), null, diff);
                } else {
                    return getChildList(profile, e.getContentReference(), null, diff);
                }
            } else if (p.startsWith(path + ".") && !p.equals(path)) {
                String tail = p.substring(path.length() + 1);
                if (!tail.contains(".")) {
                    res.add(e);
                }
            }
        }
    }
    return res;
}

Example 17 with IndexOf

use of org.hl7.elm.r1.IndexOf in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method closeChildren.

private void closeChildren(StructureDefinition base, ElementDefinition edb, StructureDefinition derived, ElementDefinition edm) {
    String path = edb.getPath() + ".";
    int baseStart = base.getSnapshot().getElement().indexOf(edb);
    int baseEnd = findEnd(base.getSnapshot().getElement(), edb, baseStart + 1);
    int diffStart = derived.getDifferential().getElement().indexOf(edm);
    int diffEnd = findEnd(derived.getDifferential().getElement(), edm, diffStart + 1);
    for (int cBase = baseStart; cBase < baseEnd; cBase++) {
        ElementDefinition edBase = base.getSnapshot().getElement().get(cBase);
        if (isImmediateChild(edBase, edb)) {
            ElementDefinition edMatch = getMatchInDerived(edBase, derived.getDifferential().getElement(), diffStart, diffEnd);
            if (edMatch == null) {
                ElementDefinition edd = derived.getDifferential().addElement();
                edd.setPath(edBase.getPath());
                edd.setMax("0");
            } else {
                closeChildren(base, edBase, derived, edMatch);
            }
        }
    }
}

Example 18 with IndexOf

use of org.hl7.elm.r1.IndexOf in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method extensionIsComplex.

private boolean extensionIsComplex(String value) {
    if (value.contains("#")) {
        StructureDefinition ext = context.fetchResource(StructureDefinition.class, value.substring(0, value.indexOf("#")));
        if (ext == null)
            return false;
        String tail = value.substring(value.indexOf("#") + 1);
        ElementDefinition ed = null;
        for (ElementDefinition ted : ext.getSnapshot().getElement()) {
            if (tail.equals(ted.getSliceName())) {
                ed = ted;
                break;
            }
        }
        if (ed == null)
            return false;
        int i = ext.getSnapshot().getElement().indexOf(ed);
        int j = i + 1;
        while (j < ext.getSnapshot().getElement().size() && !ext.getSnapshot().getElement().get(j).getPath().equals(ed.getPath())) j++;
        return j - i > 5;
    } else {
        StructureDefinition ext = context.fetchResource(StructureDefinition.class, value);
        return ext != null && ext.getSnapshot().getElement().size() > 5;
    }
}

Example 19 with IndexOf

use of org.hl7.elm.r1.IndexOf in project org.hl7.fhir.core by hapifhir.

the class R3TEchnicalCorrectionProcessor method execute.

private void execute(String src, String packageRoot) throws FileNotFoundException, IOException {
    System.out.println("Loading resources from " + src);
    List<Resource> resources = new ArrayList<>();
    Map<String, Resource> definitions = new HashMap<>();
    for (File f : new File(src).listFiles()) {
        if (f.getName().endsWith(".xml") && !(f.getName().endsWith("warnings.xml") || f.getName().endsWith(".diff.xml"))) {
            try {
                Resource r = new XmlParser().parse(new FileInputStream(f));
                if (f.getName().contains("canonical")) {
                    resources.add(r);
                }
                if (Utilities.existsInList(f.getName(), "conceptmaps.xml", "dataelements.xml", "extension-definitions.xml", "profiles-others.xml", "profiles-resources.xml", "profiles-types.xml", "search-parameters.xml", "v2-tables.xml", "v3-codesystems.xml", "valuesets.xml")) {
                    definitions.put(f.getName(), r);
                }
                r.setUserData("path", f.getName().substring(0, f.getName().indexOf(".")));
            // FileUtils.copyFile(f, new File(f.getAbsolutePath()+"1"));
            // FileUtils.copyFile(f, new File(f.getAbsolutePath()+"2"));
            } catch (Exception e) {
                System.out.println("Unable to load " + f.getName() + ": " + e.getMessage());
            }
        }
        if (f.getName().endsWith(".json") && !(f.getName().endsWith("schema.json") || f.getName().endsWith(".diff.json"))) {
            try {
            // new JsonParser().parse(new FileInputStream(f));
            // FileUtils.copyFile(f, new File(f.getAbsolutePath()+"1"));
            // FileUtils.copyFile(f, new File(f.getAbsolutePath()+"2"));
            } catch (Exception e) {
                System.out.println("Unable to load " + f.getName() + ": " + e.getMessage());
            }
        }
    }
    System.out.println(Integer.toString(resources.size()) + " resources");
    System.out.println(Integer.toString(definitions.size()) + " resources");
    produceExamplesXml(resources, src);
    produceDefinitionsXml(definitions, src);
    produceExamplesJson(resources, src);
    produceDefinitionsJson(definitions, src);
    for (Resource r : definitions.values()) {
        if (r instanceof Bundle) {
            Bundle bnd = (Bundle) r;
            for (BundleEntryComponent be : bnd.getEntry()) {
                resources.add(be.getResource());
            }
        }
    }
    extractToPackageMaster(resources, packageRoot);
    System.out.println("Done");
}

Example 20 with IndexOf

use of org.hl7.elm.r1.IndexOf in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method getChildList.

public List<ElementDefinition> getChildList(StructureDefinition profile, String path, String id, boolean diff, boolean refs) {
    List<ElementDefinition> res = new ArrayList<ElementDefinition>();
    boolean capturing = id == null;
    if (id == null && !path.contains("."))
        capturing = true;
    List<ElementDefinition> list = diff ? profile.getDifferential().getElement() : profile.getSnapshot().getElement();
    for (ElementDefinition e : list) {
        if (e == null)
            throw new Error(context.formatMessage(I18nConstants.ELEMENT__NULL_, profile.getUrl()));
        if (e.getId() == null)
            throw new Error(context.formatMessage(I18nConstants.ELEMENT_ID__NULL__ON_, e.toString(), profile.getUrl()));
        if (!capturing && id != null && e.getId().equals(id)) {
            capturing = true;
        }
        // If our element is a slice, stop capturing children as soon as we see the next slice
        if (capturing && e.hasId() && id != null && !e.getId().equals(id) && e.getPath().equals(path))
            break;
        if (capturing) {
            String p = e.getPath();
            if (refs && !Utilities.noString(e.getContentReference()) && path.startsWith(p)) {
                if (path.length() > p.length()) {
                    return getChildList(profile, e.getContentReference() + "." + path.substring(p.length() + 1), null, diff);
                } else if (e.getContentReference().startsWith("#")) {
                    return getChildList(profile, e.getContentReference().substring(1), null, diff);
                } else if (e.getContentReference().contains("#")) {
                    String url = e.getContentReference().substring(0, e.getContentReference().indexOf("#"));
                    StructureDefinition sd = context.fetchResource(StructureDefinition.class, url);
                    if (sd == null) {
                        throw new DefinitionException("Unable to find Structure " + url);
                    }
                    return getChildList(sd, e.getContentReference().substring(e.getContentReference().indexOf("#") + 1), null, diff);
                } else {
                    return getChildList(profile, e.getContentReference(), null, diff);
                }
            } else if (p.startsWith(path + ".") && !p.equals(path)) {
                String tail = p.substring(path.length() + 1);
                if (!tail.contains(".")) {
                    res.add(e);
                }
            }
        }
    }
    return res;
}