Examples with ContactPoint org.hl7.fhir.dstu2.model.ContactPoint used on opensource projects

Example 1 with ContactPoint

use of org.hl7.fhir.dstu2.model.ContactPoint in project gpconnect-demonstrator by nhsconnect.

the class AppointmentResourceProvider method appointmentResourceConverterToAppointmentDetail.

/**
 * fhir resource Appointment to AppointmentDetail
 *
 * @param appointment Resource
 * @return populated AppointmentDetail
 */
private AppointmentDetail appointmentResourceConverterToAppointmentDetail(Appointment appointment) {
    appointmentValidation.validateAppointmentExtensions(appointment.getExtension());
    if (appointmentValidation.appointmentDescriptionTooLong(appointment)) {
        throwUnprocessableEntity422_InvalidResourceException("Appointment description cannot be greater then " + APPOINTMENT_DESCRIPTION_LENGTH + " characters");
    }
    AppointmentDetail appointmentDetail = new AppointmentDetail();
    Long id = appointment.getIdElement().getIdPartAsLong();
    appointmentDetail.setId(id);
    appointmentDetail.setLastUpdated(getLastUpdated(appointment.getMeta().getLastUpdated()));
    List<Extension> cnlExtension = appointment.getExtensionsByUrl(SystemURL.SD_EXTENSION_GPC_APPOINTMENT_CANCELLATION_REASON);
    if (cnlExtension != null && !cnlExtension.isEmpty()) {
        IBaseDatatype value = cnlExtension.get(0).getValue();
        if (null == value) {
            throwInvalidRequest400_BadRequestException("Cancellation reason missing.");
        }
        appointmentDetail.setCancellationReason(value.toString());
    }
    appointmentDetail.setStatus(appointment.getStatus().toString().toLowerCase(Locale.UK));
    appointmentDetail.setMinutesDuration(appointment.getMinutesDuration());
    appointmentDetail.setPriority(appointment.getPriority());
    appointmentDetail.setStartDateTime(appointment.getStart());
    appointmentDetail.setEndDateTime(appointment.getEnd());
    List<Long> slotIds = new ArrayList<>();
    for (Reference slotReference : appointment.getSlot()) {
        // #200 check slots for absolute references
        checkReferenceIsRelative(slotReference.getReference());
        try {
            String here = slotReference.getReference().substring("Slot/".length());
            Long slotId = new Long(here);
            slotIds.add(slotId);
        } catch (NumberFormatException ex) {
            throwUnprocessableEntity422_InvalidResourceException(String.format("The slot reference value data type for %s is not valid.", slotReference.getReference()));
        }
    }
    appointmentDetail.setSlotIds(slotIds);
    if (appointmentValidation.appointmentCommentTooLong(appointment)) {
        throwUnprocessableEntity422_InvalidResourceException("Appointment comment cannot be greater than " + APPOINTMENT_COMMENT_LENGTH + " characters");
    }
    appointmentDetail.setComment(appointment.getComment());
    appointmentDetail.setDescription(appointment.getDescription());
    for (AppointmentParticipantComponent participant : appointment.getParticipant()) {
        if (participant.getActor() != null) {
            String participantReference = participant.getActor().getReference();
            String actorIdString = participantReference.substring(participantReference.lastIndexOf("/") + 1);
            Long actorId;
            if (actorIdString.equals("null")) {
                actorId = null;
            } else {
                actorId = Long.valueOf(actorIdString);
            }
            if (participantReference.contains("Patient/")) {
                appointmentDetail.setPatientId(actorId);
            } else if (participantReference.contains("Practitioner/")) {
                appointmentDetail.setPractitionerId(actorId);
            } else if (participantReference.contains("Location/")) {
                appointmentDetail.setLocationId(actorId);
            }
        } else {
            throwUnprocessableEntity422_InvalidResourceException("Participant Actor cannot be null");
        }
    }
    if (appointment.getCreated() != null) {
        Date created = appointment.getCreated();
        appointmentDetail.setCreated(created);
    }
    // #200 check extensions for absolute references
    List<Extension> extensions = appointment.getExtension();
    for (Extension extension : extensions) {
        try {
            Reference reference = (Reference) extension.getValue();
            if (reference != null) {
                checkReferenceIsRelative(reference.getReference());
            }
        } catch (ClassCastException ex) {
        }
    }
    List<Resource> contained = appointment.getContained();
    if (contained != null && !contained.isEmpty()) {
        Resource org = contained.get(0);
        Organization bookingOrgRes = (Organization) org;
        BookingOrgDetail bookingOrgDetail = new BookingOrgDetail();
        appointmentValidation.validateBookingOrganizationValuesArePresent(bookingOrgRes);
        bookingOrgDetail.setName(bookingOrgRes.getName());
        // #198 add system and optional use type. Pick system phone if > 1 and available otherwise use the one supplied
        Iterator<ContactPoint> iter = bookingOrgRes.getTelecom().iterator();
        ContactPoint telecom = bookingOrgRes.getTelecomFirstRep();
        while (iter.hasNext()) {
            ContactPoint thisTelecom = iter.next();
            if (thisTelecom.getSystem() == ContactPoint.ContactPointSystem.PHONE) {
                telecom = thisTelecom;
                break;
            }
        }
        bookingOrgDetail.setTelephone(telecom.getValue());
        bookingOrgDetail.setSystem(telecom.getSystem().toString());
        if (telecom.getUse() != null && !telecom.getUse().toString().trim().isEmpty()) {
            bookingOrgDetail.setUsetype(telecom.getUse().toString());
        }
        if (!bookingOrgRes.getIdentifier().isEmpty()) {
            bookingOrgDetail.setOrgCode(bookingOrgRes.getIdentifierFirstRep().getValue());
            String system = bookingOrgRes.getIdentifierFirstRep().getSystem();
            // check that organization identifier system is https://fhir.nhs.uk/Id/ods-organization-code
            if (system != null && !system.trim().isEmpty()) {
                if (!system.equals(ID_ODS_ORGANIZATION_CODE)) {
                    throwUnprocessableEntity422_InvalidResourceException("Appointment organisation identifier system must be an ODS code!");
                }
            } else {
                throwUnprocessableEntity422_InvalidResourceException("Appointment organisation identifier system must be populated!");
            }
        }
        bookingOrgDetail.setAppointmentDetail(appointmentDetail);
        appointmentDetail.setBookingOrganization(bookingOrgDetail);
        // 1.2.7
        appointmentDetail.setServiceCategory(appointment.getServiceCategory().getText());
        appointmentDetail.setServiceType(appointment.getServiceTypeFirstRep().getText());
    }
    return appointmentDetail;
}

Example 2 with ContactPoint

use of org.hl7.fhir.dstu2.model.ContactPoint in project gpconnect-demonstrator by nhsconnect.

the class AppointmentResourceProvider method appointmentDetailToAppointmentResourceConverter.

/**
 * AppointmentDetail to fhir resource Appointment
 *
 * @param appointmentDetail
 * @return Appointment Resource
 */
private Appointment appointmentDetailToAppointmentResourceConverter(AppointmentDetail appointmentDetail) {
    Appointment appointment = new Appointment();
    String appointmentId = String.valueOf(appointmentDetail.getId());
    String versionId = String.valueOf(appointmentDetail.getLastUpdated().getTime());
    String resourceType = appointment.getResourceType().toString();
    IdType id = new IdType(resourceType, appointmentId, versionId);
    appointment.setId(id);
    appointment.getMeta().setVersionId(versionId);
    appointment.getMeta().setLastUpdated(appointmentDetail.getLastUpdated());
    appointment.getMeta().addProfile(SystemURL.SD_GPC_APPOINTMENT);
    Extension extension = new Extension(SystemURL.SD_EXTENSION_GPC_APPOINTMENT_CANCELLATION_REASON, new StringType(appointmentDetail.getCancellationReason()));
    appointment.addExtension(extension);
    // #157 derive delivery channel from slot
    List<Long> sids = appointmentDetail.getSlotIds();
    ScheduleDetail scheduleDetail = null;
    if (sids.size() > 0) {
        // get the first slot but it should not matter because for multi slot appts the deliveryChannel is always the same
        SlotDetail slotDetail = slotSearch.findSlotByID(sids.get(0));
        String deliveryChannel = slotDetail.getDeliveryChannelCode();
        if (deliveryChannel != null && !deliveryChannel.trim().isEmpty()) {
            Extension deliveryChannelExtension = new Extension(SystemURL.SD_EXTENSION_GPC_DELIVERY_CHANNEL, new CodeType(deliveryChannel));
            appointment.addExtension(deliveryChannelExtension);
        }
        scheduleDetail = scheduleSearch.findScheduleByID(slotDetail.getScheduleReference());
    }
    // practitioner role extension here
    // lookup the practitioner
    Long practitionerID = appointmentDetail.getPractitionerId();
    if (practitionerID != null) {
        // #195 we need to get this detail from the schedule not the practitioner table
        if (scheduleDetail != null) {
            Coding roleCoding = new Coding(SystemURL.VS_GPC_PRACTITIONER_ROLE, scheduleDetail.getPractitionerRoleCode(), scheduleDetail.getPractitionerRoleDisplay());
            Extension practitionerRoleExtension = new Extension(SystemURL.SD_EXTENSION_GPC_PRACTITIONER_ROLE, new CodeableConcept().addCoding(roleCoding));
            appointment.addExtension(practitionerRoleExtension);
        }
    }
    switch(appointmentDetail.getStatus().toLowerCase(Locale.UK)) {
        case "pending":
            appointment.setStatus(AppointmentStatus.PENDING);
            break;
        case "booked":
            appointment.setStatus(AppointmentStatus.BOOKED);
            break;
        case "arrived":
            appointment.setStatus(AppointmentStatus.ARRIVED);
            break;
        case "fulfilled":
            appointment.setStatus(AppointmentStatus.FULFILLED);
            break;
        case "cancelled":
            appointment.setStatus(AppointmentStatus.CANCELLED);
            break;
        case "noshow":
            appointment.setStatus(AppointmentStatus.NOSHOW);
            break;
        default:
            appointment.setStatus(AppointmentStatus.PENDING);
            break;
    }
    appointment.setStart(appointmentDetail.getStartDateTime());
    appointment.setEnd(appointmentDetail.getEndDateTime());
    // #218 Date time formats
    appointment.getStartElement().setPrecision(TemporalPrecisionEnum.SECOND);
    appointment.getEndElement().setPrecision(TemporalPrecisionEnum.SECOND);
    List<Reference> slotResources = new ArrayList<>();
    for (Long slotId : appointmentDetail.getSlotIds()) {
        slotResources.add(new Reference("Slot/" + slotId));
    }
    appointment.setSlot(slotResources);
    if (appointmentDetail.getPriority() != null) {
        appointment.setPriority(appointmentDetail.getPriority());
    }
    appointment.setComment(appointmentDetail.getComment());
    appointment.setDescription(appointmentDetail.getDescription());
    appointment.addParticipant().setActor(new Reference("Patient/" + appointmentDetail.getPatientId())).setStatus(ParticipationStatus.ACCEPTED);
    appointment.addParticipant().setActor(new Reference("Location/" + appointmentDetail.getLocationId())).setStatus(ParticipationStatus.ACCEPTED);
    if (null != appointmentDetail.getPractitionerId()) {
        appointment.addParticipant().setActor(new Reference("Practitioner/" + appointmentDetail.getPractitionerId())).setStatus(ParticipationStatus.ACCEPTED);
    }
    if (null != appointmentDetail.getCreated()) {
        appointment.setCreated(appointmentDetail.getCreated());
    }
    if (null != appointmentDetail.getBookingOrganization()) {
        // add extension with reference to contained item
        String reference = "#1";
        Reference orgRef = new Reference(reference);
        Extension bookingOrgExt = new Extension(SystemURL.SD_CC_APPOINTMENT_BOOKINGORG, orgRef);
        appointment.addExtension(bookingOrgExt);
        BookingOrgDetail bookingOrgDetail = appointmentDetail.getBookingOrganization();
        Organization bookingOrg = new Organization();
        bookingOrg.setId(reference);
        bookingOrg.getNameElement().setValue(bookingOrgDetail.getName());
        // #198 org phone now persists usetype and system
        ContactPoint orgTelecom = bookingOrg.getTelecomFirstRep();
        orgTelecom.setValue(bookingOrgDetail.getTelephone());
        try {
            orgTelecom.setSystem(ContactPointSystem.fromCode(bookingOrgDetail.getSystem().toLowerCase()));
            if (bookingOrgDetail.getUsetype() != null && !bookingOrgDetail.getUsetype().trim().isEmpty()) {
                orgTelecom.setUse(ContactPointUse.fromCode(bookingOrgDetail.getUsetype().toLowerCase()));
            }
        } catch (FHIRException ex) {
        // Logger.getLogger(AppointmentResourceProvider.class.getName()).log(Level.SEVERE, null, ex);
        }
        bookingOrg.getMeta().addProfile(SystemURL.SD_GPC_ORGANIZATION);
        if (null != bookingOrgDetail.getOrgCode()) {
            bookingOrg.getIdentifierFirstRep().setSystem(SystemURL.ID_ODS_ORGANIZATION_CODE).setValue(bookingOrgDetail.getOrgCode());
        }
        // add contained booking organization resource
        appointment.getContained().add(bookingOrg);
    }
    // if bookingOrganization
    appointment.setMinutesDuration(appointmentDetail.getMinutesDuration());
    // 1.2.7 set service category from schedule type description
    appointment.setServiceCategory(new CodeableConcept().setText(scheduleDetail.getTypeDescription()));
    // 1.2.7 set service type from slot type description
    appointment.addServiceType(new CodeableConcept().setText(slotSearch.findSlotByID(sids.get(0)).getTypeDisply()));
    return appointment;
}

Example 3 with ContactPoint

use of org.hl7.fhir.dstu2.model.ContactPoint in project gpconnect-demonstrator by nhsconnect.

the class PatientResourceProvider method createContact.

// patientDetailsToMinimalPatient
/**
 * add a set of contact details into the patient record NB these are
 * Contacts (related people etc) not contactpoints (telecoms)
 *
 * @param patient fhirResource object
 */
private void createContact(Patient patient) {
    // relationships
    Patient.ContactComponent contact = new ContactComponent();
    for (String relationship : new String[] { "Emergency contact", "Next of kin", "Daughter" }) {
        CodeableConcept crelationship = new CodeableConcept();
        crelationship.setText(relationship);
        contact.addRelationship(crelationship);
    }
    // contact address
    Address address = new Address();
    address.addLine("Trevelyan Square");
    address.addLine("Boar Ln");
    address.setPostalCode("LS1 6AE");
    address.setType(AddressType.PHYSICAL);
    address.setUse(AddressUse.HOME);
    contact.setAddress(address);
    // gender
    contact.setGender(AdministrativeGender.FEMALE);
    // telecom
    ContactPoint telecom = new ContactPoint();
    telecom.setSystem(ContactPointSystem.PHONE);
    telecom.setUse(ContactPointUse.MOBILE);
    telecom.setValue("07777123123");
    contact.addTelecom(telecom);
    // Name
    HumanName name = new HumanName();
    name.addGiven("Jane");
    name.setFamily("Jackson");
    List<StringType> prefixList = new ArrayList<>();
    prefixList.add(new StringType("Miss"));
    name.setPrefix(prefixList);
    name.setText("JACKSON Jane (Miss)");
    name.setUse(NameUse.OFFICIAL);
    contact.setName(name);
    patient.addContact(contact);
}

Example 4 with ContactPoint

use of org.hl7.fhir.dstu2.model.ContactPoint in project kindling by HL7.

the class Publisher method generateCodeSystemRegistry.

private void generateCodeSystemRegistry() throws FileNotFoundException, IOException, Exception {
    XmlParser xml = new XmlParser();
    xml.setOutputStyle(OutputStyle.PRETTY);
    Bundle bnd = (Bundle) xml.parse(new CSFileInputStream(Utilities.path(page.getFolders().srcDir, "namingsystem", "namingsystem-terminologies.xml")));
    for (BundleEntryComponent entry : bnd.getEntry()) {
        NamingSystem ns = (NamingSystem) entry.getResource();
        entry.setFullUrl("http://hl7.org/fhir/NamingSystem/" + ns.getId());
        String url = null;
        for (NamingSystemUniqueIdComponent t : ns.getUniqueId()) {
            if (t.getType() == NamingSystemIdentifierType.URI)
                url = t.getValue();
        }
        if (url != null) {
            if (url.startsWith("http://hl7.org/fhir"))
                page.getDefinitions().addNs(url, "System " + ns.getName(), "terminologies-systems.html#" + url);
            page.getDefinitions().addNs(entry.getFullUrl(), ns.getId(), "terminologies-systems.html#" + url);
        }
    }
    List<String> names = new ArrayList<String>();
    Set<String> urls = new HashSet<>();
    names.addAll(page.getCodeSystems().keys());
    Collections.sort(names);
    for (String n : names) {
        CodeSystem cs = page.getCodeSystems().get(n);
        if (cs != null && !urls.contains(cs.getUrl()) && cs.hasUrl() && !cs.getUrl().startsWith("http://terminology.hl7.org")) {
            urls.add(cs.getUrl());
            if (cs.hasName()) {
                NamingSystem ns = new NamingSystem();
                ns.setId(cs.getId());
                ns.setName(cs.getName());
                ns.setStatus(cs.getStatus());
                if (!ns.hasStatus())
                    ns.setStatus(PublicationStatus.DRAFT);
                ns.setKind(NamingSystemType.CODESYSTEM);
                ns.setPublisher(cs.getPublisher());
                for (ContactDetail c : cs.getContact()) {
                    ContactDetail nc = ns.addContact();
                    nc.setName(c.getName());
                    for (ContactPoint cc : c.getTelecom()) {
                        nc.getTelecom().add(cc);
                    }
                }
                ns.setDate(cs.getDate());
                if (!ns.hasDate())
                    ns.setDate(page.getGenDate().getTime());
                ns.setDescription(cs.getDescription());
                ns.addUniqueId().setType(NamingSystemIdentifierType.URI).setValue(cs.getUrl()).setPreferred(true);
                String oid = CodeSystemUtilities.getOID(cs);
                if (oid != null) {
                    if (oid.startsWith("urn:oid:"))
                        oid = oid.substring(8);
                    ns.addUniqueId().setType(NamingSystemIdentifierType.OID).setValue(oid).setPreferred(false);
                }
                ns.setUserData("path", cs.getUserData("path"));
                bnd.addEntry().setResource(ns).setFullUrl("http://hl7.org/fhir/" + ns.fhirType() + "/" + ns.getId());
            }
        }
    }
    xml.compose(new FileOutputStream(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.xml")), bnd);
    cloneToXhtml("namingsystem-terminologies", "Terminology Registry", false, "resource-instance:NamingSystem", "Terminology Registry", null, wg("vocab"));
    xml.setOutputStyle(OutputStyle.CANONICAL);
    xml.compose(new FileOutputStream(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.canonical.xml")), bnd);
    JsonParser json = new JsonParser();
    json.setOutputStyle(OutputStyle.PRETTY);
    json.compose(new FileOutputStream(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.json")), bnd);
    jsonToXhtml("namingsystem-terminologies", "Terminology Registry", TextFile.fileToString(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.json")), "resource-instance:NamingSystem", "Terminology Registry", null, wg("vocab"));
    json.setOutputStyle(OutputStyle.CANONICAL);
    json.compose(new FileOutputStream(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.canonical.json")), bnd);
    RdfParser rdf = new RdfParser();
    rdf.setOutputStyle(OutputStyle.PRETTY);
    rdf.compose(new FileOutputStream(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.ttl")), bnd);
    ttlToXhtml("namingsystem-terminologies", "Terminology Registry", TextFile.fileToString(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.ttl")), "resource-instance:NamingSystem", "Terminology Registry", null, wg("vocab"));
    StringBuilder b = new StringBuilder();
    b.append("<table class=\"grid\">\r\n");
    b.append(" <tr>");
    b.append("<td><b>Name</b></td>");
    b.append("<td><b>Uri</b></td>");
    b.append("<td><b>OID</b></td>");
    b.append("</tr>\r\n");
    for (BundleEntryComponent entry : bnd.getEntry()) {
        NamingSystem ns = (NamingSystem) entry.getResource();
        String uri = "";
        String oid = "";
        for (NamingSystemUniqueIdComponent id : ns.getUniqueId()) {
            if (id.getType() == NamingSystemIdentifierType.URI)
                uri = id.getValue();
            if (id.getType() == NamingSystemIdentifierType.OID)
                oid = id.getValue();
        }
        String link = "terminologies-systems.html#" + uri;
        if (ns.getUserData("path") != null)
            link = ns.getUserString("path");
        b.append(" <tr>");
        b.append("<td><a href=\"" + link + "\">" + Utilities.escapeXml(ns.getName()) + "</a></td>");
        b.append("<td>" + Utilities.escapeXml(uri) + "</td>");
        b.append("<td>" + Utilities.escapeXml(oid) + "</td>");
        b.append("</tr>\r\n");
    }
    b.append("</table>\r\n");
    String html = TextFile.fileToString(page.getFolders().templateDir + "template-example.html").replace("<%example%>", b.toString()).replace("<%example-usage%>", "");
    html = page.processPageIncludes("namingsystem-terminologies.html", html, "resource-instance:NamingSystem", null, bnd, null, "Example", null, null, page.getDefinitions().getWorkgroups().get("fhir"));
    TextFile.stringToFile(html, page.getFolders().dstDir + "namingsystem-terminologies.html");
    cachePage("namingsystem-terminologies.html", html, "Registered Code Systems", false);
}

Example 5 with ContactPoint

use of org.hl7.fhir.dstu2.model.ContactPoint in project kindling by HL7.

the class CodeListToValueSetParser method generateConceptMapV2.

private void generateConceptMapV2(String v2map, ValueSet vs, CodeSystem cs) throws Exception {
    ConceptMap cm = new ConceptMap();
    cm.setId("cm-" + vs.getId() + "-v2");
    cm.setVersion(version);
    cm.setUserData("path", cm.getId() + ".html");
    cm.setUserData("generate", true);
    cm.setUrl("http://hl7.org/fhir/ConceptMap/" + cm.getId());
    cm.setName("v2." + vs.getName());
    cm.setTitle("v2 map for " + vs.present());
    cm.setPublisher("HL7 (FHIR Project)");
    for (ContactDetail cc : vs.getContact()) {
        ContactDetail cd = cm.addContact();
        cd.setName(cc.getName());
        for (ContactPoint ccs : cc.getTelecom()) cd.addTelecom(ccs.copy());
    }
    cm.setCopyright(vs.getCopyright());
    // until we publish DSTU, then .review
    cm.setStatus(vs.getStatus());
    cm.setDate(vs.getDate());
    cm.setSource(Factory.newCanonical(vs.getUrl()));
    cm.setTarget(Factory.newCanonical(v2map));
    if (cs != null)
        processV2ConceptDefs(cm, cs.getUrl(), cs.getConcept());
    for (ConceptSetComponent cc : vs.getCompose().getInclude()) for (ConceptReferenceComponent c : cc.getConcept()) {
        processV2Map(cm, cc.getSystem(), c.getCode(), c.getUserString("v2"));
    }
    maps.see(cm, packageInfo);
}