Examples with Address org.hl7.fhir.dstu2016may.model.Address used on opensource projects

Example 51 with Address

use of org.hl7.fhir.dstu2016may.model.Address in project openmrs-module-fhir2 by openmrs.

the class LocationFhirResourceProviderIntegrationTest method shouldSearchForExistingLocationsAsXML.

@Test
public void shouldSearchForExistingLocationsAsXML() throws Exception {
    MockHttpServletResponse response = get("/Location").accept(FhirMediaTypes.XML).go();
    assertThat(response, isOk());
    assertThat(response.getContentType(), is(FhirMediaTypes.XML.toString()));
    assertThat(response.getContentAsString(), notNullValue());
    Bundle results = readBundleResponse(response);
    assertThat(results, notNullValue());
    assertThat(results.getType(), equalTo(Bundle.BundleType.SEARCHSET));
    assertThat(results.hasEntry(), is(true));
    List<Bundle.BundleEntryComponent> entries = results.getEntry();
    assertThat(entries, everyItem(hasProperty("fullUrl", startsWith("http://localhost/ws/fhir2/R3/Location/"))));
    assertThat(entries, everyItem(hasResource(instanceOf(Location.class))));
    assertThat(entries, everyItem(hasResource(validResource())));
    response = get("/Location?address-city=Kerio&partof=" + PARENT_LOCATION_UUID + "&_sort=name").accept(FhirMediaTypes.XML).go();
    assertThat(response, isOk());
    assertThat(response.getContentType(), is(FhirMediaTypes.XML.toString()));
    assertThat(response.getContentAsString(), notNullValue());
    results = readBundleResponse(response);
    assertThat(results, notNullValue());
    assertThat(results.getType(), equalTo(Bundle.BundleType.SEARCHSET));
    assertThat(results.hasEntry(), is(true));
    entries = results.getEntry();
    assertThat(entries, everyItem(hasResource(hasProperty("address", hasProperty("city", equalTo("Kerio"))))));
    assertThat(entries, everyItem(hasResource(hasProperty("partOf", hasProperty("referenceElement", hasProperty("idPart", equalTo(PARENT_LOCATION_UUID)))))));
    assertThat(entries, containsInRelativeOrder(hasResource(hasProperty("name", equalTo("Test location 6"))), hasResource(hasProperty("name", equalTo("Test location 8")))));
    assertThat(entries, everyItem(hasResource(validResource())));
}

Example 52 with Address

use of org.hl7.fhir.dstu2016may.model.Address in project Gravity-SDOH-Exchange-RI by FHIR.

the class PatientToDtoConverter method convert.

@Override
public PatientDto convert(PatientInfo patientInfo) {
    Patient patient = patientInfo.getPatient();
    PatientDto patientDto = new PatientDto();
    patientDto.setId(patient.getIdElement().getIdPart());
    patientDto.setName(patient.getNameFirstRep().getNameAsSingleString());
    // Get Date of Birth and Age
    if (patient.hasBirthDate()) {
        LocalDate dob = FhirUtil.toLocalDate(patient.getBirthDateElement());
        patientDto.setDob(dob);
        patientDto.setAge(Period.between(dob, LocalDate.now(ZoneOffset.UTC)).getYears());
    }
    // Get gender
    patientDto.setGender(ObjectUtils.defaultIfNull(patient.getGender(), Enumerations.AdministrativeGender.UNKNOWN).getDisplay());
    // Get communication language
    patientDto.setLanguage(patient.getCommunication().stream().filter(Patient.PatientCommunicationComponent::getPreferred).map(c -> c.getLanguage().getCodingFirstRep()).map(c -> c.getDisplay() != null ? c.getDisplay() : c.getCode()).filter(Objects::nonNull).findFirst().orElse(null));
    // Get Address full String. No need to compose it on UI side.
    patientDto.setAddress(patient.getAddress().stream().filter(a -> (patient.getAddress().size() == 1 && a.getUse() == null) || Address.AddressUse.HOME.equals(a.getUse())).map(this::convertAddress).findFirst().orElse(null));
    List<ContactPoint> telecom = patient.getTelecom();
    // Get phone numbers
    patientDto.getPhones().addAll(telecom.stream().filter(t -> ContactPoint.ContactPointSystem.PHONE.equals(t.getSystem())).map(cp -> {
        String display = cp.getUse() == null ? null : cp.getUse().getDisplay();
        return new PhoneDto(display, cp.getValue());
    }).collect(Collectors.toList()));
    // Get email addreses
    patientDto.getEmails().addAll(telecom.stream().filter(t -> ContactPoint.ContactPointSystem.EMAIL.equals(t.getSystem())).map(cp -> {
        String display = cp.getUse() == null ? null : cp.getUse().getDisplay();
        return new EmailDto(display, cp.getValue());
    }).collect(Collectors.toList()));
    if (patientInfo.getEmployment() != null) {
        String employmentStatus = patientInfo.getEmployment().getValueCodeableConcept().getCodingFirstRep().getDisplay();
        patientDto.setEmploymentStatus(employmentStatus);
    }
    if (patientInfo.getEducation() != null) {
        String education = patientInfo.getEducation().getValueCodeableConcept().getCodingFirstRep().getDisplay();
        patientDto.setEducation(education);
    }
    // Get race
    Extension race = patient.getExtensionByUrl(UsCorePatientExtensions.RACE);
    patientDto.setRace(convertExtension(race));
    // Get ethnicity
    Extension ethnicity = patient.getExtensionByUrl(UsCorePatientExtensions.ETHNICITY);
    patientDto.setEthnicity(convertExtension(ethnicity));
    // Get marital status
    Coding ms = patient.getMaritalStatus().getCodingFirstRep();
    patientDto.setMaritalStatus(Optional.ofNullable(ms.getDisplay()).orElse(Optional.ofNullable(ms.getCode()).orElse(null)));
    patientDto.getInsurances().addAll(convertPayors(patientInfo.getPayors()));
    return patientDto;
}

Example 53 with Address

use of org.hl7.fhir.dstu2016may.model.Address in project drug-formulary-ri by HL7-DaVinci.

the class JpaRestfulServer method initialize.

@SuppressWarnings("unchecked")
@Override
protected void initialize() throws ServletException {
    super.initialize();
    /*
     * Create a FhirContext object that uses the version of FHIR
     * specified in the properties file.
     */
    ApplicationContext appCtx = (ApplicationContext) getServletContext().getAttribute("org.springframework.web.context.WebApplicationContext.ROOT");
    // Customize supported resource types
    Set<String> supportedResourceTypes = HapiProperties.getSupportedResourceTypes();
    if (!supportedResourceTypes.isEmpty() && !supportedResourceTypes.contains("SearchParameter")) {
        supportedResourceTypes.add("SearchParameter");
    }
    if (!supportedResourceTypes.isEmpty()) {
        DaoRegistry daoRegistry = appCtx.getBean(DaoRegistry.class);
        daoRegistry.setSupportedResourceTypes(supportedResourceTypes);
    }
    /*
     * ResourceProviders are fetched from the Spring context
     */
    FhirVersionEnum fhirVersion = HapiProperties.getFhirVersion();
    ResourceProviderFactory resourceProviders;
    Object systemProvider;
    if (fhirVersion == FhirVersionEnum.DSTU2) {
        resourceProviders = appCtx.getBean("myResourceProvidersDstu2", ResourceProviderFactory.class);
        systemProvider = appCtx.getBean("mySystemProviderDstu2", JpaSystemProviderDstu2.class);
    } else if (fhirVersion == FhirVersionEnum.DSTU3) {
        resourceProviders = appCtx.getBean("myResourceProvidersDstu3", ResourceProviderFactory.class);
        systemProvider = appCtx.getBean("mySystemProviderDstu3", JpaSystemProviderDstu3.class);
    } else if (fhirVersion == FhirVersionEnum.R4) {
        resourceProviders = appCtx.getBean("myResourceProvidersR4", ResourceProviderFactory.class);
        systemProvider = appCtx.getBean("mySystemProviderR4", JpaSystemProviderR4.class);
    } else if (fhirVersion == FhirVersionEnum.R5) {
        resourceProviders = appCtx.getBean("myResourceProvidersR5", ResourceProviderFactory.class);
        systemProvider = appCtx.getBean("mySystemProviderR5", JpaSystemProviderR5.class);
    } else {
        throw new IllegalStateException();
    }
    setFhirContext(appCtx.getBean(FhirContext.class));
    registerProviders(resourceProviders.createProviders());
    registerProvider(systemProvider);
    /*
     * The conformance provider exports the supported resources, search parameters,
     * etc for
     * this server. The JPA version adds resourceProviders counts to the exported
     * statement, so it
     * is a nice addition.
     *
     * You can also create your own subclass of the conformance provider if you need
     * to
     * provide further customization of your server's CapabilityStatement
     */
    IFhirSystemDao<org.hl7.fhir.r4.model.Bundle, org.hl7.fhir.r4.model.Meta> systemDao = appCtx.getBean("mySystemDaoR4", IFhirSystemDao.class);
    MetadataProvider metadata = new MetadataProvider(this, systemDao, appCtx.getBean(DaoConfig.class));
    // JpaConformanceProviderR4 confProvider = new JpaConformanceProviderR4(this,
    // systemDao,
    // appCtx.getBean(DaoConfig.class));
    metadata.setImplementationDescription("Da Vinci Drug Formulary Reference Server");
    setServerConformanceProvider(metadata);
    /*
     * ETag Support
     */
    setETagSupport(HapiProperties.getEtagSupport());
    /*
     * This server tries to dynamically generate narratives
     */
    FhirContext ctx = getFhirContext();
    ctx.setNarrativeGenerator(new DefaultThymeleafNarrativeGenerator());
    /*
     * Default to JSON and pretty printing
     */
    setDefaultPrettyPrint(HapiProperties.getDefaultPrettyPrint());
    /*
     * Default encoding
     */
    setDefaultResponseEncoding(HapiProperties.getDefaultEncoding());
    /*
     * This configures the server to page search results to and from
     * the database, instead of only paging them to memory. This may mean
     * a performance hit when performing searches that return lots of results,
     * but makes the server much more scalable.
     */
    setPagingProvider(appCtx.getBean(DatabaseBackedPagingProvider.class));
    /*
     * This interceptor formats the output using nice colourful
     * HTML output when the request is detected to come from a
     * browser.
     */
    ResponseHighlighterInterceptor responseHighlighterInterceptor = new ResponseHighlighterInterceptor();
    this.registerInterceptor(responseHighlighterInterceptor);
    /*
     * Add Read Only Interceptor
     */
    ReadOnlyInterceptor readOnlyInterceptor = new ReadOnlyInterceptor();
    this.registerInterceptor(readOnlyInterceptor);
    /*
     * This interceptor handles the $export operation
     */
    ExportInterceptor exportInterceptor = new ExportInterceptor();
    this.registerInterceptor(exportInterceptor);
    /*
     * Add some logging for each request
     */
    LoggingInterceptor loggingInterceptor = new LoggingInterceptor();
    loggingInterceptor.setLoggerName(HapiProperties.getLoggerName());
    loggingInterceptor.setMessageFormat(HapiProperties.getLoggerFormat());
    loggingInterceptor.setErrorMessageFormat(HapiProperties.getLoggerErrorFormat());
    loggingInterceptor.setLogExceptions(HapiProperties.getLoggerLogExceptions());
    this.registerInterceptor(loggingInterceptor);
    /*
     * Add Authorization interceptor
     */
    PatientAuthorizationInterceptor authorizationInterceptor = new PatientAuthorizationInterceptor();
    this.registerInterceptor(authorizationInterceptor);
    /*
     * If you are hosting this server at a specific DNS name, the server will try to
     * figure out the FHIR base URL based on what the web container tells it, but
     * this doesn't always work. If you are setting links in your search bundles
     * that
     * just refer to "localhost", you might want to use a server address strategy:
     */
    String serverAddress = HapiProperties.getServerAddress();
    if (serverAddress != null && serverAddress.length() > 0) {
        setServerAddressStrategy(new HardcodedServerAddressStrategy(serverAddress));
    }
    /*
     * If you are using DSTU3+, you may want to add a terminology uploader, which
     * allows
     * uploading of external terminologies such as Snomed CT. Note that this
     * uploader
     * does not have any security attached (any anonymous user may use it by
     * default)
     * so it is a potential security vulnerability. Consider using an
     * AuthorizationInterceptor
     * with this feature.
     */
    if (false) {
        // <-- DISABLED RIGHT NOW
        registerProvider(appCtx.getBean(TerminologyUploaderProvider.class));
    }
    // manual triggering of a subscription delivery, enable this provider
    if (false) {
        // <-- DISABLED RIGHT NOW
        SubscriptionTriggeringProvider retriggeringProvider = appCtx.getBean(SubscriptionTriggeringProvider.class);
        registerProvider(retriggeringProvider);
    }
    // to your specific needs
    if (HapiProperties.getCorsEnabled()) {
        CorsConfiguration config = new CorsConfiguration();
        config.addAllowedHeader(HttpHeaders.ORIGIN);
        config.addAllowedHeader(HttpHeaders.ACCEPT);
        config.addAllowedHeader(HttpHeaders.CONTENT_TYPE);
        config.addAllowedHeader(HttpHeaders.AUTHORIZATION);
        config.addAllowedHeader(HttpHeaders.CACHE_CONTROL);
        config.addAllowedHeader("x-fhir-starter");
        config.addAllowedHeader("X-Requested-With");
        config.addAllowedHeader("Prefer");
        String allAllowedCORSOrigins = HapiProperties.getCorsAllowedOrigin();
        Arrays.stream(allAllowedCORSOrigins.split(",")).forEach(o -> {
            config.addAllowedOrigin(o);
        });
        config.addAllowedOrigin(HapiProperties.getCorsAllowedOrigin());
        config.addExposedHeader("Location");
        config.addExposedHeader("Content-Location");
        config.setAllowedMethods(Arrays.asList("GET", "POST", "PUT", "DELETE", "OPTIONS", "PATCH", "HEAD"));
        config.setAllowCredentials(HapiProperties.getCorsAllowedCredentials());
        // Create the interceptor and register it
        CorsInterceptor interceptor = new CorsInterceptor(config);
        registerInterceptor(interceptor);
    }
    // will activate them and match results against them
    if (HapiProperties.getSubscriptionWebsocketEnabled() || HapiProperties.getSubscriptionEmailEnabled() || HapiProperties.getSubscriptionRestHookEnabled()) {
        // Loads subscription interceptors (SubscriptionActivatingInterceptor,
        // SubscriptionMatcherInterceptor)
        // with activation of scheduled subscription
        SubscriptionInterceptorLoader subscriptionInterceptorLoader = appCtx.getBean(SubscriptionInterceptorLoader.class);
        subscriptionInterceptorLoader.registerInterceptors();
        // Subscription debug logging
        IInterceptorService interceptorService = appCtx.getBean(IInterceptorService.class);
        interceptorService.registerInterceptor(new SubscriptionDebugLogInterceptor());
    }
    // Cascading deletes
    DaoRegistry daoRegistry = appCtx.getBean(DaoRegistry.class);
    IInterceptorBroadcaster interceptorBroadcaster = appCtx.getBean(IInterceptorBroadcaster.class);
    if (HapiProperties.getAllowCascadingDeletes()) {
        CascadingDeleteInterceptor cascadingDeleteInterceptor = new CascadingDeleteInterceptor(daoRegistry, interceptorBroadcaster);
        getInterceptorService().registerInterceptor(cascadingDeleteInterceptor);
    }
    // Binary Storage
    if (HapiProperties.isBinaryStorageEnabled()) {
        BinaryStorageInterceptor binaryStorageInterceptor = appCtx.getBean(BinaryStorageInterceptor.class);
        getInterceptorService().registerInterceptor(binaryStorageInterceptor);
    }
    // Validation
    IValidatorModule validatorModule;
    switch(fhirVersion) {
        case DSTU2:
            validatorModule = appCtx.getBean("myInstanceValidatorDstu2", IValidatorModule.class);
            break;
        case DSTU3:
            validatorModule = appCtx.getBean("myInstanceValidatorDstu3", IValidatorModule.class);
            break;
        case R4:
            validatorModule = appCtx.getBean("myInstanceValidatorR4", IValidatorModule.class);
            break;
        case R5:
            validatorModule = appCtx.getBean("myInstanceValidatorR5", IValidatorModule.class);
            break;
        // These versions are not supported by HAPI FHIR JPA
        case DSTU2_HL7ORG:
        case DSTU2_1:
        default:
            validatorModule = null;
            break;
    }
    if (validatorModule != null) {
        if (HapiProperties.getValidateRequestsEnabled()) {
            RequestValidatingInterceptor interceptor = new RequestValidatingInterceptor();
            interceptor.setFailOnSeverity(ResultSeverityEnum.ERROR);
            interceptor.setValidatorModules(Collections.singletonList(validatorModule));
            registerInterceptor(interceptor);
        }
        if (HapiProperties.getValidateResponsesEnabled()) {
            ResponseValidatingInterceptor interceptor = new ResponseValidatingInterceptor();
            interceptor.setFailOnSeverity(ResultSeverityEnum.ERROR);
            interceptor.setValidatorModules(Collections.singletonList(validatorModule));
            registerInterceptor(interceptor);
        }
    }
    // GraphQL
    if (HapiProperties.getGraphqlEnabled()) {
        if (fhirVersion.isEqualOrNewerThan(FhirVersionEnum.DSTU3)) {
            registerProvider(appCtx.getBean(GraphQLProvider.class));
        }
    }
    if (!HapiProperties.getAllowedBundleTypes().isEmpty()) {
        String allowedBundleTypesString = HapiProperties.getAllowedBundleTypes();
        Set<String> allowedBundleTypes = new HashSet<>();
        Arrays.stream(allowedBundleTypesString.split(",")).forEach(o -> {
            BundleType type = BundleType.valueOf(o);
            allowedBundleTypes.add(type.toCode());
        });
        DaoConfig config = appCtx.getBean(DaoConfig.class);
        config.setBundleTypesAllowedForStorage(Collections.unmodifiableSet(new TreeSet<>(allowedBundleTypes)));
    }
    // Bulk Export
    if (HapiProperties.getBulkExportEnabled()) {
        registerProvider(appCtx.getBean(BulkDataExportProvider.class));
    }
}

Example 54 with Address

use of org.hl7.fhir.dstu2016may.model.Address in project integration-adaptor-111 by nhsconnect.

the class OrganizationMapperTest method mockItkOrganization.

private POCDMT000002UK01Organization mockItkOrganization() {
    POCDMT000002UK01Organization itkOrganization = mock(POCDMT000002UK01Organization.class);
    AD itkAddress = mock(AD.class);
    TEL itkTelecom = mock(TEL.class);
    CE codeEntity = mock(CE.class);
    II[] iiArray = new II[] { ii };
    when(itkOrganization.getIdArray()).thenReturn(iiArray);
    when(ii.isSetExtension()).thenReturn(true);
    when(ii.getExtension()).thenReturn(ODS_CODE);
    when(itkOrganization.sizeOfIdArray()).thenReturn(1);
    when(itkOrganization.getAddrArray()).thenReturn(new AD[] { itkAddress });
    when(itkOrganization.getTelecomArray()).thenReturn(new TEL[] { itkTelecom });
    when(itkOrganization.isSetStandardIndustryClassCode()).thenReturn(true);
    when(itkOrganization.getStandardIndustryClassCode()).thenReturn(codeEntity);
    when(codeEntity.getDisplayName()).thenReturn(GP_PRACTICE);
    when(contactPointMapper.mapContactPoint(any())).thenReturn(contactPoint);
    when(addressMapper.mapAddress(any())).thenReturn(address);
    when(nodeUtil.getNodeValueString(itkOrganization.getNameArray(0))).thenReturn(ORGANIZATION_NAME);
    when(resourceUtil.newRandomUuid()).thenReturn(new IdType(RANDOM_UUID));
    Organization organization = organizationMapper.mapOrganization(itkOrganization);
    assertThat(organization.getName()).isEqualTo(ORGANIZATION_NAME);
    assertThat(organization.getAddressFirstRep()).isEqualTo(address);
    assertThat(organization.getTelecomFirstRep()).isEqualTo(contactPoint);
    assertThat(organization.getTypeFirstRep().getText()).isEqualTo(GP_PRACTICE);
    assertThat(organization.getIdentifierFirstRep().getValue()).isEqualTo(ODS_CODE);
    assertThat(organization.getIdElement().getValue()).isEqualTo(RANDOM_UUID);
    return itkOrganization;
}

Example 55 with Address

use of org.hl7.fhir.dstu2016may.model.Address in project integration-adaptor-111 by nhsconnect.

the class PractitionerMapperTest method shouldMapPractitionerFromAssociatedEntity.

@Test
public void shouldMapPractitionerFromAssociatedEntity() {
    POCDMT000002UK01AssociatedEntity associatedEntity = POCDMT000002UK01AssociatedEntity.Factory.newInstance();
    associatedEntity.setAssociatedPerson(createPerson());
    associatedEntity.setTelecomArray(createTelecomArray());
    associatedEntity.setAddrArray(createAddrArray());
    when(humanNameMapper.mapHumanName(ArgumentMatchers.any())).thenReturn(humanName);
    when(contactPointMapper.mapContactPoint(ArgumentMatchers.any())).thenReturn(contactPoint);
    when(addressMapper.mapAddress(ArgumentMatchers.any())).thenReturn(address);
    when(resourceUtil.newRandomUuid()).thenReturn(new IdType(RANDOM_UUID));
    Practitioner practitioner = practitionerMapper.mapPractitioner(associatedEntity);
    assertThat(practitioner.getIdElement().getValue()).isEqualTo(RANDOM_UUID);
    assertThat(practitioner.getActive()).isEqualTo(true);
    assertThat(practitioner.getNameFirstRep()).isEqualTo(humanName);
    assertThat(practitioner.getTelecomFirstRep()).isEqualTo(contactPoint);
    assertThat(practitioner.getAddressFirstRep()).isEqualTo(address);
}