use of org.hl7.fhir.dstu2016may.model.Base in project kindling by HL7.
the class ProfileGenerator method generateXhtml.
public StructureDefinition generateXhtml() throws Exception {
uml.getTypes().put("html:div", new UMLPrimitive("html:div"));
StructureDefinition p = new StructureDefinition();
p.setId("xhtml");
p.setUrl("http://hl7.org/fhir/StructureDefinition/xhtml");
p.setKind(StructureDefinitionKind.PRIMITIVETYPE);
p.setAbstract(false);
p.setUserData("filename", "xhtml");
p.setUserData("path", "narrative.html#xhtml");
p.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/Element");
p.setType("xhtml");
p.setDerivation(TypeDerivationRule.SPECIALIZATION);
p.setFhirVersion(version);
p.setVersion(version.toCode());
ToolingExtensions.setStandardsStatus(p, StandardsStatus.NORMATIVE, "4.0.0");
ToolResourceUtilities.updateUsage(p, "core");
p.setName("xhtml");
p.setPublisher("HL7 FHIR Standard");
p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
p.setDescription("Base StructureDefinition for xhtml Type");
p.setDate(genDate.getTime());
p.setStatus(PublicationStatus.fromCode("active"));
Set<String> containedSlices = new HashSet<String>();
// first, the differential
p.setDifferential(new StructureDefinitionDifferentialComponent());
ElementDefinition ec = new ElementDefinition();
p.getDifferential().getElement().add(ec);
ec.setId("xhtml");
ec.setPath("xhtml");
ec.setShort("Primitive Type " + "xhtml");
ec.setDefinition("XHTML");
ec.setMin(0);
ec.setMax("*");
ec = new ElementDefinition();
p.getDifferential().getElement().add(ec);
ec.setId("xhtml" + ".extension");
ec.setPath("xhtml" + ".extension");
ec.setMax("0");
ec = new ElementDefinition();
p.getDifferential().getElement().add(ec);
ec.setId("xhtml" + ".value");
ec.setPath("xhtml" + ".value");
ec.addRepresentation(PropertyRepresentation.XHTML);
ec.setShort("Actual xhtml");
ec.setDefinition("Actual xhtml");
ec.setMin(1);
ec.setMax("1");
TypeRefComponent t = ec.addType();
t.setCodeElement(new UriType());
t.getFormatCommentsPre().add("Note: special primitive values have a FHIRPath system type. e.g. this is compiler magic (d)");
t.setCode(Constants.NS_SYSTEM_TYPE + "String");
ToolingExtensions.addUriExtension(t, ToolingExtensions.EXT_FHIR_TYPE, "string");
reset();
// now. the snapshot
p.setSnapshot(new StructureDefinitionSnapshotComponent());
ElementDefinition ec1 = new ElementDefinition(true, ElementDefinition.NOT_MODIFIER, ElementDefinition.NOT_IN_SUMMARY);
p.getSnapshot().getElement().add(ec1);
ec1.setId("xhtml");
ec1.setPath("xhtml");
ec1.setShort("Primitive Type " + "xhtml");
ec1.setDefinition("XHTML");
ec1.setMin(0);
ec1.setMin(0);
ec1.setMax("*");
ec1.makeBase();
generateElementDefinition(p, ec1, null);
ElementDefinition ec2 = new ElementDefinition(true, ElementDefinition.NOT_MODIFIER, ElementDefinition.NOT_IN_SUMMARY);
p.getSnapshot().getElement().add(ec2);
ec2.setId("xhtml.id");
ec2.setPath("xhtml.id");
ec2.addRepresentation(PropertyRepresentation.XMLATTR);
ec2.setDefinition("unique id for the element within a resource (for internal references)");
ec2.setMin(0);
ec2.setMax("1");
ec2.setShort("xml:id (or equivalent in JSON)");
TypeRefComponent tr = ec2.addType();
t.getFormatCommentsPre().add("Note: special primitive values have a FHIRPath system type. e.g. this is compiler magic (e)");
tr.setCode(Constants.NS_SYSTEM_TYPE + "String");
ToolingExtensions.addUriExtension(t, ToolingExtensions.EXT_FHIR_TYPE, "string");
generateElementDefinition(p, ec2, ec1);
ec2.makeBase("Element.id", 0, "1");
ElementDefinition ex = makeExtensionSlice("extension", p, p.getSnapshot(), null, "xhtml");
ex.setMax("0");
ElementDefinition ec3 = new ElementDefinition(true, ElementDefinition.NOT_MODIFIER, ElementDefinition.NOT_IN_SUMMARY);
p.getSnapshot().getElement().add(ec3);
ec3.setId("xhtml.value");
ec3.setPath("xhtml.value");
ec3.addRepresentation(PropertyRepresentation.XHTML);
ec3.setShort("Actual xhtml");
ec3.setDefinition("Actual xhtml");
ec3.setMin(1);
ec3.setMax("1");
t = ec3.addType();
t.setCodeElement(new UriType());
t.getFormatCommentsPre().add("Note: special primitive values have a FHIRPath system type. e.g. this is compiler magic (f)");
t.setCode(Constants.NS_SYSTEM_TYPE + "String");
ToolingExtensions.addUriExtension(t, ToolingExtensions.EXT_FHIR_TYPE, "string");
ec3.makeBase();
generateElementDefinition(p, ec3, ec);
containedSlices.clear();
addElementConstraintToSnapshot(p);
XhtmlNode div = new XhtmlNode(NodeType.Element, "div");
div.addText("to do");
p.setText(new Narrative());
p.getText().setStatus(NarrativeStatus.GENERATED);
p.getText().setDiv(div);
checkHasTypes(p);
return p;
}
use of org.hl7.fhir.dstu2016may.model.Base in project kindling by HL7.
the class DictHTMLGenerator method invariants.
//
//
// for (String id : ids) {
// ElementDefinitionConstraintComponent inv = getConstraint(constraints, id);
// s.append("<tr><td><b title=\"Formal Invariant Identifier\">"+inv.getId()+"</b></td><td>"+presentLevel(inv)+"</td><td>(base)</td><td>"+Utilities.escapeXml(inv.getHuman())+"</td><td><span style=\"font-family: Courier New, monospace\">"+Utilities.escapeXml(inv.getExpression())+"</span>");
// if (inv.hasExtension("http://hl7.org/fhir/StructureDefinition/elementdefinition-bestpractice"))
// s.append("<br/>This is (only) a best practice guideline because: <blockquote>"+page.processMarkdown("best practice guideline", inv.getExtensionString("http://hl7.org/fhir/StructureDefinition/elementdefinition-bestpractice-explanation"), prefix)+"</blockquote>");
// s.append("</td></tr>");
// }
// }
private String invariants(Map<String, Invariant> invariants, List<Invariant> stated) throws Exception {
List<String> done = new ArrayList<String>();
StringBuilder s = new StringBuilder();
if (invariants.size() + stated.size() > 0) {
s.append("<table class=\"dict\">\r\n");
if (invariants.size() > 0) {
s.append("<tr><td colspan=\"4\"><b>Defined on this element</b></td></tr>\r\n");
List<String> ids = new ArrayList<String>();
for (String id : invariants.keySet()) ids.add(id);
Collections.sort(ids, new ConstraintsSorter());
for (String i : ids) {
Invariant inv = invariants.get(i);
done.add(inv.getId());
s.append("<tr><td width=\"60px\"><b title=\"Formal Invariant Identifier\">" + inv.getId() + "</b></td><td>" + presentLevel(inv) + "</td><td>" + Utilities.escapeXml(inv.getEnglish()) + "</td><td><span style=\"font-family: Courier New, monospace\">" + Utilities.escapeXml(inv.getExpression()) + "</span>");
if (!Utilities.noString(inv.getExplanation()))
s.append("<br/>This is (only) a best practice guideline because: <blockquote>" + page.processMarkdown("best practice guideline", inv.getExplanation(), prefix) + "</blockquote>");
s.append("</td></tr>");
}
}
if (stated.size() > 0) {
s.append("<tr><td colspan=\"4\"><b>Affect this element</b></td></tr>\r\n");
boolean b = false;
for (Invariant id : stated) {
if (!done.contains(id.getId())) {
s.append("<tr><td width=\"60px\"><b title=\"Formal Invariant Identifier\">" + id.getId() + "</b></td><td>" + presentLevel(id) + "</td><td>" + Utilities.escapeXml(id.getEnglish()) + "</td><td><span style=\"font-family: Courier New, monospace\">" + Utilities.escapeXml(id.getExpression()) + "</span>");
if (!Utilities.noString(id.getExplanation()))
s.append("<br/>This is (only) a best practice guideline because: <blockquote>" + page.processMarkdown("best practice guideline", id.getExplanation(), prefix) + "</blockquote>");
s.append("</td></tr>");
}
}
}
s.append("</table>\r\n");
}
return s.toString();
}
use of org.hl7.fhir.dstu2016may.model.Base in project kindling by HL7.
the class FhirTurtleGenerator method genBaseMetadata.
/**
* Emit all the basic atoms that are implicit in the actual model
*/
private void genBaseMetadata() {
// Declare these for now - they will get filled in more completely later on
FHIRResource Resource = fact.fhir_class("Resource");
FHIRResource Element = fact.fhir_class("Element");
FHIRResource Reference = fact.fhir_class("Reference");
// Primitive isn't in the actual model - added here
fact.fhir_class("Primitive").addTitle("Types with only a value").addDefinition("Types with only a value and no additional elements as children").restriction(fact.fhir_restriction(value, RDFS.Literal));
// A resource can have an optional nodeRole
FHIRResource treeRoot = fact.fhir_class("treeRoot").addTitle("Class of FHIR base documents");
FHIRResource nodeRole = fact.fhir_objectProperty("nodeRole").addTitle("Identifies role of subject in context of a given document").domain(Resource).range(treeRoot.resource);
Resource.restriction(fact.fhir_cardinality_restriction(nodeRole.resource, treeRoot.resource, 0, 1));
// Any element can have an index to assign order in a list
FHIRResource index = fact.fhir_dataProperty("index").addTitle("Ordering value for list").domain(Element).range(XSD.nonNegativeInteger);
Element.restriction(fact.fhir_cardinality_restriction(index.resource, XSD.nonNegativeInteger, 0, 1));
// References have an optional link
FHIRResource link = fact.fhir_objectProperty("link").addTitle("URI of a reference");
Reference.restriction(fact.fhir_cardinality_restriction(link.resource, Resource.resource, 0, 1));
// XHTML is an XML Literal -- but it isn't recognized by OWL so we use string
FHIRResource NarrativeDiv = fact.fhir_dataProperty("Narrative.div");
fact.fhir_class("xhtml", "Primitive").restriction(fact.fhir_cardinality_restriction(value, fact.fhir_datatype(XSD.xstring).resource, 1, 1));
}
use of org.hl7.fhir.dstu2016may.model.Base in project hl7v2-fhir-converter by LinuxForHealth.
the class HL7EventTypeFHIRConversionTest method validate_evn_segment_no_period_override.
@Test
void validate_evn_segment_no_period_override() {
String hl7message = "MSH|^~\\&|||||||ADT^A01^ADT_A01|64322|P|2.6|123|456|ER|AL|USA|ASCII|en|2.6||||||\r" + // + "EVN||||7525||20210319134735|\r" // TODO, not working with this value
"EVN||||O||20210319134735|\r" + "PV1|1|I||R|||||||||R|1||||||||||||||||||||||||||||||200603150624|200603150625|||||||";
String json = ftv.convert(hl7message, OPTIONS);
assertThat(json).isNotBlank();
FHIRContext context = new FHIRContext();
IBaseResource bundleResource = context.getParser().parseResource(json);
assertThat(bundleResource).isNotNull();
Bundle b = (Bundle) bundleResource;
List<BundleEntryComponent> e = b.getEntry();
// Find the encounter from the FHIR bundle.
List<Resource> encounterResource = e.stream().filter(v -> ResourceType.Encounter == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
assertThat(encounterResource).hasSize(1);
Encounter encounter = (Encounter) encounterResource.get(0);
// ENV.4 is used for reasonCode
List<CodeableConcept> reasonCodes = encounter.getReasonCode();
assertEquals(1, reasonCodes.size());
CodeableConcept encounterReason = encounter.getReasonCodeFirstRep();
Coding encounterReasonCoding = encounterReason.getCodingFirstRep();
// assertThat(encounterReasonCoding.getCode()).isEqualTo("7525"); // TODO, should be able to use user-defined values
assertThat(encounterReasonCoding.getCode()).isEqualTo("O");
// EVN.6 is used for start period if there is no PV1.44 but since we have a
// PV1.44 it should use that not EVN.6
Base period = encounter.getNamedProperty("period").getValues().get(0);
String startPeriod = period.getNamedProperty("start").getValues().get(0).toString();
// And use PV1.45 for end period.
String endPeriod = period.getNamedProperty("end").getValues().get(0).toString();
assertThat(startPeriod).isEqualTo("DateTimeType[2006-03-15T06:24:00+08:00]");
assertThat(endPeriod).isEqualTo("DateTimeType[2006-03-15T06:25:00+08:00]");
}
use of org.hl7.fhir.dstu2016may.model.Base in project hl7v2-fhir-converter by LinuxForHealth.
the class HL7EventTypeFHIRConversionTest method validate_evn_segment.
@Test
void validate_evn_segment() {
String hl7message = "MSH|^~\\&|||||||ADT^A01^ADT_A01|64322|P|2.6|123|456|ER|AL|USA|ASCII|en|2.6||||||\r" + // + "EVN||||851||20210319134735|\r" // TODO, not working with this value
"EVN||||O||20210319134735|\r" + "PV1|1|I||R|||||||||R|1||||||||||||||||||||||||||||||||||||||";
String json = ftv.convert(hl7message, OPTIONS);
assertThat(json).isNotBlank();
FHIRContext context = new FHIRContext(true, false);
IBaseResource bundleResource = context.getParser().parseResource(json);
assertThat(bundleResource).isNotNull();
Bundle b = (Bundle) bundleResource;
List<BundleEntryComponent> e = b.getEntry();
// Find the encounter from the FHIR bundle.
List<Resource> encounterResource = e.stream().filter(v -> ResourceType.Encounter == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
assertThat(encounterResource).hasSize(1);
Encounter encounter = (Encounter) encounterResource.get(0);
// ENV.4 is used for reasonCode
List<CodeableConcept> reasonCodes = encounter.getReasonCode();
assertEquals(1, reasonCodes.size());
CodeableConcept encounterReason = encounter.getReasonCodeFirstRep();
Coding encounterReasonCoding = encounterReason.getCodingFirstRep();
// assertThat(encounterReasonCoding.getCode()).isEqualTo("851"); // TODO, should be able to use user-defined values
assertThat(encounterReasonCoding.getCode()).isEqualTo("O");
// EVN.6 is used for start period (with no end) if there is no PV1.44
Base period = encounter.getNamedProperty("period").getValues().get(0);
String startPeriod = period.getNamedProperty("start").getValues().get(0).toString();
int endPeriodSize = period.getNamedProperty("end").getValues().size();
assertThat(startPeriod).isEqualTo("DateTimeType[2021-03-19T13:47:35+08:00]");
assertThat(endPeriodSize).isZero();
}
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