Examples with TypeRefComponent org.hl7.fhir.dstu3.model.ElementDefinition.TypeRefComponent used on opensource projects

Example 46 with TypeRefComponent

use of org.hl7.fhir.dstu3.model.ElementDefinition.TypeRefComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileComparer method intersectTypes.

private Collection<? extends TypeRefComponent> intersectTypes(ProfileComparison comp, StructuralMatch<ElementDefinitionNode> res, ElementDefinition ed, String path, List<TypeRefComponent> left, List<TypeRefComponent> right) throws DefinitionException, IOException, FHIRFormatError {
    List<TypeRefComponent> result = new ArrayList<TypeRefComponent>();
    for (TypeRefComponent l : left) {
        if (l.hasAggregation())
            throw new DefinitionException("Aggregation not supported: " + path);
        boolean pfound = false;
        boolean tfound = false;
        TypeRefComponent c = l.copy();
        for (TypeRefComponent r : right) {
            if (r.hasAggregation())
                throw new DefinitionException("Aggregation not supported: " + path);
            if (!l.hasProfile() && !r.hasProfile()) {
                pfound = true;
            } else if (!r.hasProfile()) {
                pfound = true;
            } else if (!l.hasProfile()) {
                pfound = true;
                c.setProfile(r.getProfile());
            } else {
                StructureDefinition sdl = resolveProfile(comp, res, path, l.getProfile().get(0).getValue(), comp.getLeft().getName(), session.getContextLeft());
                StructureDefinition sdr = resolveProfile(comp, res, path, r.getProfile().get(0).getValue(), comp.getRight().getName(), session.getContextRight());
                if (sdl != null && sdr != null) {
                    if (sdl == sdr) {
                        pfound = true;
                    } else if (derivesFrom(sdl, sdr, session.getContextLeft())) {
                        pfound = true;
                    } else if (derivesFrom(sdr, sdl, session.getContextRight())) {
                        c.setProfile(r.getProfile());
                        pfound = true;
                    } else if (sdl.getType().equals(sdr.getType())) {
                        ProfileComparison compP = (ProfileComparison) session.compare(sdl, sdr);
                        if (compP != null && compP.getIntersection() != null) {
                            pfound = true;
                            c.addProfile("#" + compP.getId());
                        }
                    }
                }
            }
            if (!l.hasTargetProfile() && !r.hasTargetProfile()) {
                tfound = true;
            } else if (!r.hasTargetProfile()) {
                tfound = true;
            } else if (!l.hasTargetProfile()) {
                tfound = true;
                c.setTargetProfile(r.getTargetProfile());
            } else {
                StructureDefinition sdl = resolveProfile(comp, res, path, l.getTargetProfile().get(0).getValue(), comp.getLeft().getName(), session.getContextLeft());
                StructureDefinition sdr = resolveProfile(comp, res, path, r.getTargetProfile().get(0).getValue(), comp.getRight().getName(), session.getContextRight());
                if (sdl != null && sdr != null) {
                    if (matches(sdl, sdr)) {
                        tfound = true;
                    } else if (derivesFrom(sdl, sdr, session.getContextLeft())) {
                        tfound = true;
                    } else if (derivesFrom(sdr, sdl, session.getContextRight())) {
                        c.setTargetProfile(r.getTargetProfile());
                        tfound = true;
                    } else if (sdl.getType().equals(sdr.getType())) {
                        ProfileComparison compP = (ProfileComparison) session.compare(sdl, sdr);
                        if (compP != null && compP.getIntersection() != null) {
                            tfound = true;
                            c.addTargetProfile("#" + compP.getId());
                        }
                    }
                }
            }
        }
        if (pfound && tfound)
            result.add(c);
    }
    return result;
}

Example 47 with TypeRefComponent

use of org.hl7.fhir.dstu3.model.ElementDefinition.TypeRefComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method genTargetLink.

public void genTargetLink(HierarchicalTableGenerator gen, String profileBaseFileName, String corePath, Cell c, TypeRefComponent t, String u) {
    if (u.startsWith("http://hl7.org/fhir/StructureDefinition/")) {
        StructureDefinition sd = context.fetchResource(StructureDefinition.class, u);
        if (sd != null) {
            String disp = sd.hasTitle() ? sd.getTitle() : sd.getName();
            c.addPiece(checkForNoChange(t, gen.new Piece(checkPrepend(corePath, sd.getUserString("path")), disp, null)));
        } else {
            String rn = u.substring(40);
            c.addPiece(checkForNoChange(t, gen.new Piece(pkp.getLinkFor(corePath, rn), rn, null)));
        }
    } else if (Utilities.isAbsoluteUrl(u)) {
        StructureDefinition sd = context.fetchResource(StructureDefinition.class, u);
        if (sd != null) {
            String disp = sd.hasTitle() ? sd.getTitle() : sd.getName();
            String ref = pkp.getLinkForProfile(null, sd.getUrl());
            if (ref != null && ref.contains("|"))
                ref = ref.substring(0, ref.indexOf("|"));
            c.addPiece(checkForNoChange(t, gen.new Piece(ref, disp, null)));
        } else
            c.addPiece(checkForNoChange(t, gen.new Piece(null, u, null)));
    } else if (t.hasTargetProfile() && u.startsWith("#"))
        c.addPiece(checkForNoChange(t, gen.new Piece(corePath + profileBaseFileName + "." + u.substring(1).toLowerCase() + ".html", u, null)));
}

Example 48 with TypeRefComponent

use of org.hl7.fhir.dstu3.model.ElementDefinition.TypeRefComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method makeChoiceRows.

private void makeChoiceRows(List<Row> subRows, ElementDefinition element, HierarchicalTableGenerator gen, String corePath, String profileBaseFileName, boolean mustSupportMode) {
    // create a child for each choice
    for (TypeRefComponent tr : element.getType()) {
        if (!mustSupportMode || allTypesMustSupport(element) || isMustSupport(tr)) {
            Row choicerow = gen.new Row();
            String t = tr.getWorkingCode();
            if (isReference(t)) {
                choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(t)), null, null));
                choicerow.getCells().add(gen.new Cell());
                choicerow.getCells().add(gen.new Cell(null, null, "", null, null));
                choicerow.setIcon("icon_reference.png", HierarchicalTableGenerator.TEXT_ICON_REFERENCE);
                Cell c = gen.new Cell();
                choicerow.getCells().add(c);
                if (ADD_REFERENCE_TO_TABLE) {
                    if (tr.getWorkingCode().equals("canonical"))
                        c.getPieces().add(gen.new Piece(corePath + "datatypes.html#canonical", "canonical", null));
                    else
                        c.getPieces().add(gen.new Piece(corePath + "references.html#Reference", "Reference", null));
                    if (!mustSupportMode && isMustSupportDirect(tr) && element.getMustSupport()) {
                        c.addPiece(gen.new Piece(null, " ", null));
                        c.addStyledText(translate("sd.table", "This type must be supported"), "S", "white", "red", null, false);
                    }
                    c.getPieces().add(gen.new Piece(null, "(", null));
                }
                boolean first = true;
                for (CanonicalType rt : tr.getTargetProfile()) {
                    if (!mustSupportMode || allProfilesMustSupport(tr.getTargetProfile()) || isMustSupport(rt)) {
                        if (!first)
                            c.getPieces().add(gen.new Piece(null, " | ", null));
                        genTargetLink(gen, profileBaseFileName, corePath, c, tr, rt.getValue());
                        if (!mustSupportMode && isMustSupport(rt) && element.getMustSupport()) {
                            c.addPiece(gen.new Piece(null, " ", null));
                            c.addStyledText(translate("sd.table", "This target must be supported"), "S", "white", "red", null, false);
                        }
                        first = false;
                    }
                }
                if (first) {
                    c.getPieces().add(gen.new Piece(null, "Any", null));
                }
                if (ADD_REFERENCE_TO_TABLE) {
                    c.getPieces().add(gen.new Piece(null, ")", null));
                }
            } else {
                StructureDefinition sd = context.fetchTypeDefinition(t);
                if (sd == null) {
                    System.out.println("Unable to find " + t);
                    sd = context.fetchTypeDefinition(t);
                } else if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE) {
                    choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(t)), sd.getDescription(), null));
                    choicerow.getCells().add(gen.new Cell());
                    choicerow.getCells().add(gen.new Cell(null, null, "", null, null));
                    choicerow.setIcon("icon_primitive.png", HierarchicalTableGenerator.TEXT_ICON_PRIMITIVE);
                    Cell c = gen.new Cell(null, corePath + "datatypes.html#" + t, sd.getType(), null, null);
                    choicerow.getCells().add(c);
                    if (!mustSupportMode && isMustSupport(tr) && element.getMustSupport()) {
                        c.addPiece(gen.new Piece(null, " ", null));
                        c.addStyledText(translate("sd.table", "This type must be supported"), "S", "white", "red", null, false);
                    }
                } else {
                    choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(t)), sd.getDescription(), null));
                    choicerow.getCells().add(gen.new Cell());
                    choicerow.getCells().add(gen.new Cell(null, null, "", null, null));
                    choicerow.setIcon("icon_datatype.gif", HierarchicalTableGenerator.TEXT_ICON_DATATYPE);
                    Cell c = gen.new Cell(null, pkp.getLinkFor(corePath, t), sd.getType(), null, null);
                    choicerow.getCells().add(c);
                    if (!mustSupportMode && isMustSupport(tr) && element.getMustSupport()) {
                        c.addPiece(gen.new Piece(null, " ", null));
                        c.addStyledText(translate("sd.table", "This type must be supported"), "S", "white", "red", null, false);
                    }
                }
                if (tr.hasProfile()) {
                    Cell typeCell = choicerow.getCells().get(3);
                    typeCell.addPiece(gen.new Piece(null, "(", null));
                    boolean first = true;
                    for (CanonicalType pt : tr.getProfile()) {
                        if (!mustSupportMode || allProfilesMustSupport(tr.getProfile()) || isMustSupport(pt)) {
                            if (first)
                                first = false;
                            else
                                typeCell.addPiece(gen.new Piece(null, " | ", null));
                            StructureDefinition psd = context.fetchResource(StructureDefinition.class, pt.getValue());
                            if (psd == null)
                                typeCell.addPiece(gen.new Piece(null, "?gen-e2?", null));
                            else
                                typeCell.addPiece(gen.new Piece(psd.getUserString("path"), psd.getName(), psd.present()));
                            if (!mustSupportMode && isMustSupport(pt) && element.getMustSupport()) {
                                typeCell.addPiece(gen.new Piece(null, " ", null));
                                typeCell.addStyledText(translate("sd.table", "This profile must be supported"), "S", "white", "red", null, false);
                            }
                        }
                    }
                    typeCell.addPiece(gen.new Piece(null, ")", null));
                }
            }
            choicerow.getCells().add(gen.new Cell());
            subRows.add(choicerow);
        }
    }
}

Example 49 with TypeRefComponent

use of org.hl7.fhir.dstu3.model.ElementDefinition.TypeRefComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method updateFromDefinition.

private void updateFromDefinition(ElementDefinition dest, ElementDefinition source, String pn, boolean trimDifferential, String purl, StructureDefinition srcSD) throws DefinitionException, FHIRException {
    source.setUserData(GENERATED_IN_SNAPSHOT, dest);
    // we start with a clone of the base profile ('dest') and we copy from the profile ('source')
    // over the top for anything the source has
    ElementDefinition base = dest;
    ElementDefinition derived = source;
    derived.setUserData(DERIVATION_POINTER, base);
    boolean isExtension = checkExtensionDoco(base);
    // Before applying changes, apply them to what's in the profile
    StructureDefinition profile = null;
    if (base.hasSliceName())
        profile = base.getType().size() == 1 && base.getTypeFirstRep().hasProfile() ? context.fetchResource(StructureDefinition.class, base.getTypeFirstRep().getProfile().get(0).getValue()) : null;
    if (profile == null)
        profile = source.getType().size() == 1 && source.getTypeFirstRep().hasProfile() ? context.fetchResource(StructureDefinition.class, source.getTypeFirstRep().getProfile().get(0).getValue()) : null;
    if (profile != null) {
        ElementDefinition e = profile.getSnapshot().getElement().get(0);
        String webroot = profile.getUserString("webroot");
        if (e.hasDefinition()) {
            base.setDefinition(processRelativeUrls(e.getDefinition(), webroot, baseSpecUrl(), context.getResourceNames(), masterSourceFileNames, null, true));
        }
        base.setShort(e.getShort());
        if (e.hasCommentElement())
            base.setCommentElement(e.getCommentElement());
        if (e.hasRequirementsElement())
            base.setRequirementsElement(e.getRequirementsElement());
        base.getAlias().clear();
        base.getAlias().addAll(e.getAlias());
        base.getMapping().clear();
        base.getMapping().addAll(e.getMapping());
    }
    if (derived != null) {
        if (derived.hasSliceName()) {
            base.setSliceName(derived.getSliceName());
        }
        if (derived.hasShortElement()) {
            if (!Base.compareDeep(derived.getShortElement(), base.getShortElement(), false))
                base.setShortElement(derived.getShortElement().copy());
            else if (trimDifferential)
                derived.setShortElement(null);
            else if (derived.hasShortElement())
                derived.getShortElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasDefinitionElement()) {
            if (derived.getDefinition().startsWith("..."))
                base.setDefinition(base.getDefinition() + "\r\n" + derived.getDefinition().substring(3));
            else if (!Base.compareDeep(derived.getDefinitionElement(), base.getDefinitionElement(), false))
                base.setDefinitionElement(derived.getDefinitionElement().copy());
            else if (trimDifferential)
                derived.setDefinitionElement(null);
            else if (derived.hasDefinitionElement())
                derived.getDefinitionElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasCommentElement()) {
            if (derived.getComment().startsWith("..."))
                base.setComment(base.getComment() + "\r\n" + derived.getComment().substring(3));
            else if (derived.hasCommentElement() != base.hasCommentElement() || !Base.compareDeep(derived.getCommentElement(), base.getCommentElement(), false))
                base.setCommentElement(derived.getCommentElement().copy());
            else if (trimDifferential)
                base.setCommentElement(derived.getCommentElement().copy());
            else if (derived.hasCommentElement())
                derived.getCommentElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasLabelElement()) {
            if (derived.getLabel().startsWith("..."))
                base.setLabel(base.getLabel() + "\r\n" + derived.getLabel().substring(3));
            else if (!base.hasLabelElement() || !Base.compareDeep(derived.getLabelElement(), base.getLabelElement(), false))
                base.setLabelElement(derived.getLabelElement().copy());
            else if (trimDifferential)
                base.setLabelElement(derived.getLabelElement().copy());
            else if (derived.hasLabelElement())
                derived.getLabelElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasRequirementsElement()) {
            if (derived.getRequirements().startsWith("..."))
                base.setRequirements(base.getRequirements() + "\r\n" + derived.getRequirements().substring(3));
            else if (!base.hasRequirementsElement() || !Base.compareDeep(derived.getRequirementsElement(), base.getRequirementsElement(), false))
                base.setRequirementsElement(derived.getRequirementsElement().copy());
            else if (trimDifferential)
                base.setRequirementsElement(derived.getRequirementsElement().copy());
            else if (derived.hasRequirementsElement())
                derived.getRequirementsElement().setUserData(DERIVATION_EQUALS, true);
        }
        // sdf-9
        if (derived.hasRequirements() && !base.getPath().contains("."))
            derived.setRequirements(null);
        if (base.hasRequirements() && !base.getPath().contains("."))
            base.setRequirements(null);
        if (derived.hasAlias()) {
            if (!Base.compareDeep(derived.getAlias(), base.getAlias(), false))
                for (StringType s : derived.getAlias()) {
                    if (!base.hasAlias(s.getValue()))
                        base.getAlias().add(s.copy());
                }
            else if (trimDifferential)
                derived.getAlias().clear();
            else
                for (StringType t : derived.getAlias()) t.setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMinElement()) {
            if (!Base.compareDeep(derived.getMinElement(), base.getMinElement(), false)) {
                if (// in a slice, minimum cardinality rules do not apply
                derived.getMin() < base.getMin() && !derived.hasSliceName())
                    messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + source.getPath(), "Element " + base.getPath() + ": derived min (" + Integer.toString(derived.getMin()) + ") cannot be less than base min (" + Integer.toString(base.getMin()) + ")", ValidationMessage.IssueSeverity.ERROR));
                base.setMinElement(derived.getMinElement().copy());
            } else if (trimDifferential)
                derived.setMinElement(null);
            else
                derived.getMinElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxElement()) {
            if (!Base.compareDeep(derived.getMaxElement(), base.getMaxElement(), false)) {
                if (isLargerMax(derived.getMax(), base.getMax()))
                    messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + source.getPath(), "Element " + base.getPath() + ": derived max (" + derived.getMax() + ") cannot be greater than base max (" + base.getMax() + ")", ValidationMessage.IssueSeverity.ERROR));
                base.setMaxElement(derived.getMaxElement().copy());
            } else if (trimDifferential)
                derived.setMaxElement(null);
            else
                derived.getMaxElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasFixed()) {
            if (!Base.compareDeep(derived.getFixed(), base.getFixed(), true)) {
                base.setFixed(derived.getFixed().copy());
            } else if (trimDifferential)
                derived.setFixed(null);
            else
                derived.getFixed().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasPattern()) {
            if (!Base.compareDeep(derived.getPattern(), base.getPattern(), false)) {
                base.setPattern(derived.getPattern().copy());
            } else if (trimDifferential)
                derived.setPattern(null);
            else
                derived.getPattern().setUserData(DERIVATION_EQUALS, true);
        }
        for (ElementDefinitionExampleComponent ex : derived.getExample()) {
            boolean found = false;
            for (ElementDefinitionExampleComponent exS : base.getExample()) if (Base.compareDeep(ex, exS, false))
                found = true;
            if (!found)
                base.addExample(ex.copy());
            else if (trimDifferential)
                derived.getExample().remove(ex);
            else
                ex.setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxLengthElement()) {
            if (!Base.compareDeep(derived.getMaxLengthElement(), base.getMaxLengthElement(), false))
                base.setMaxLengthElement(derived.getMaxLengthElement().copy());
            else if (trimDifferential)
                derived.setMaxLengthElement(null);
            else
                derived.getMaxLengthElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMaxValue()) {
            if (!Base.compareDeep(derived.getMaxValue(), base.getMaxValue(), false))
                base.setMaxValue(derived.getMaxValue().copy());
            else if (trimDifferential)
                derived.setMaxValue(null);
            else
                derived.getMaxValue().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMinValue()) {
            if (!Base.compareDeep(derived.getMinValue(), base.getMinValue(), false))
                base.setMinValue(derived.getMinValue().copy());
            else if (trimDifferential)
                derived.setMinValue(null);
            else
                derived.getMinValue().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMustSupportElement()) {
            if (!(base.hasMustSupportElement() && Base.compareDeep(derived.getMustSupportElement(), base.getMustSupportElement(), false))) {
                if (base.hasMustSupport() && base.getMustSupport() && !derived.getMustSupport()) {
                    messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Illegal constraint [must-support = false] when [must-support = true] in the base profile", ValidationMessage.IssueSeverity.ERROR));
                }
                base.setMustSupportElement(derived.getMustSupportElement().copy());
            } else if (trimDifferential)
                derived.setMustSupportElement(null);
            else
                derived.getMustSupportElement().setUserData(DERIVATION_EQUALS, true);
        }
        // but extensions can change isModifier
        if (isExtension) {
            if (derived.hasIsModifierElement() && !(base.hasIsModifierElement() && Base.compareDeep(derived.getIsModifierElement(), base.getIsModifierElement(), false)))
                base.setIsModifierElement(derived.getIsModifierElement().copy());
            else if (trimDifferential)
                derived.setIsModifierElement(null);
            else if (derived.hasIsModifierElement())
                derived.getIsModifierElement().setUserData(DERIVATION_EQUALS, true);
            if (derived.hasIsModifierReasonElement() && !(base.hasIsModifierReasonElement() && Base.compareDeep(derived.getIsModifierReasonElement(), base.getIsModifierReasonElement(), false)))
                base.setIsModifierReasonElement(derived.getIsModifierReasonElement().copy());
            else if (trimDifferential)
                derived.setIsModifierReasonElement(null);
            else if (derived.hasIsModifierReasonElement())
                derived.getIsModifierReasonElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasBinding()) {
            if (!base.hasBinding() || !Base.compareDeep(derived.getBinding(), base.getBinding(), false)) {
                if (base.hasBinding() && base.getBinding().getStrength() == BindingStrength.REQUIRED && derived.getBinding().getStrength() != BindingStrength.REQUIRED)
                    messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "illegal attempt to change the binding on " + derived.getPath() + " from " + base.getBinding().getStrength().toCode() + " to " + derived.getBinding().getStrength().toCode(), ValidationMessage.IssueSeverity.ERROR));
                else // throw new DefinitionException("StructureDefinition "+pn+" at "+derived.getPath()+": illegal attempt to change a binding from "+base.getBinding().getStrength().toCode()+" to "+derived.getBinding().getStrength().toCode());
                if (base.hasBinding() && derived.hasBinding() && base.getBinding().getStrength() == BindingStrength.REQUIRED && base.getBinding().hasValueSet() && derived.getBinding().hasValueSet()) {
                    ValueSet baseVs = context.fetchResource(ValueSet.class, base.getBinding().getValueSet());
                    ValueSet contextVs = context.fetchResource(ValueSet.class, derived.getBinding().getValueSet());
                    if (baseVs == null) {
                        messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + base.getPath(), "Binding " + base.getBinding().getValueSet() + " could not be located", ValidationMessage.IssueSeverity.WARNING));
                    } else if (contextVs == null) {
                        messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Binding " + derived.getBinding().getValueSet() + " could not be located", ValidationMessage.IssueSeverity.WARNING));
                    } else {
                        ValueSetExpansionOutcome expBase = context.expandVS(baseVs, true, false);
                        ValueSetExpansionOutcome expDerived = context.expandVS(contextVs, true, false);
                        if (expBase.getValueset() == null)
                            messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + base.getPath(), "Binding " + base.getBinding().getValueSet() + " could not be expanded", ValidationMessage.IssueSeverity.WARNING));
                        else if (expDerived.getValueset() == null)
                            messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Binding " + derived.getBinding().getValueSet() + " could not be expanded", ValidationMessage.IssueSeverity.WARNING));
                        else if (ToolingExtensions.hasExtension(expBase.getValueset().getExpansion(), ToolingExtensions.EXT_EXP_TOOCOSTLY))
                            messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Unable to check if " + derived.getBinding().getValueSet() + " is a proper subset of " + base.getBinding().getValueSet() + " - base value set is too large to check", ValidationMessage.IssueSeverity.WARNING));
                        else if (!isSubset(expBase.getValueset(), expDerived.getValueset()))
                            messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.BUSINESSRULE, pn + "." + derived.getPath(), "Binding " + derived.getBinding().getValueSet() + " is not a subset of binding " + base.getBinding().getValueSet(), ValidationMessage.IssueSeverity.ERROR));
                    }
                }
                ElementDefinitionBindingComponent d = derived.getBinding();
                ElementDefinitionBindingComponent nb = base.getBinding().copy();
                if (!COPY_BINDING_EXTENSIONS) {
                    nb.getExtension().clear();
                }
                nb.setDescription(null);
                nb.getExtension().addAll(d.getExtension());
                if (d.hasStrength()) {
                    nb.setStrength(d.getStrength());
                }
                if (d.hasDescription()) {
                    nb.setDescription(d.getDescription());
                }
                if (d.hasValueSet()) {
                    nb.setValueSet(d.getValueSet());
                }
                base.setBinding(nb);
            } else if (trimDifferential)
                derived.setBinding(null);
            else
                derived.getBinding().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasIsSummaryElement()) {
            if (!Base.compareDeep(derived.getIsSummaryElement(), base.getIsSummaryElement(), false)) {
                if (// work around a known issue with some 1.4.0 cosntraints
                base.hasIsSummary() && !context.getVersion().equals("1.4.0"))
                    throw new Error(context.formatMessage(I18nConstants.ERROR_IN_PROFILE__AT__BASE_ISSUMMARY___DERIVED_ISSUMMARY__, purl, derived.getPath(), base.getIsSummaryElement().asStringValue(), derived.getIsSummaryElement().asStringValue()));
                base.setIsSummaryElement(derived.getIsSummaryElement().copy());
            } else if (trimDifferential)
                derived.setIsSummaryElement(null);
            else
                derived.getIsSummaryElement().setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasType()) {
            if (!Base.compareDeep(derived.getType(), base.getType(), false)) {
                if (base.hasType()) {
                    for (TypeRefComponent ts : derived.getType()) {
                        checkTypeDerivation(purl, srcSD, base, derived, ts);
                    }
                }
                base.getType().clear();
                for (TypeRefComponent t : derived.getType()) {
                    TypeRefComponent tt = t.copy();
                    // tt.setUserData(DERIVATION_EQUALS, true);
                    base.getType().add(tt);
                }
            } else if (trimDifferential)
                derived.getType().clear();
            else
                for (TypeRefComponent t : derived.getType()) t.setUserData(DERIVATION_EQUALS, true);
        }
        if (derived.hasMapping()) {
            // todo: mappings are not cumulative - one replaces another
            if (!Base.compareDeep(derived.getMapping(), base.getMapping(), false)) {
                for (ElementDefinitionMappingComponent s : derived.getMapping()) {
                    boolean found = false;
                    for (ElementDefinitionMappingComponent d : base.getMapping()) {
                        found = found || (d.getIdentity().equals(s.getIdentity()) && d.getMap().equals(s.getMap()));
                    }
                    if (!found) {
                        base.getMapping().add(s);
                    }
                }
            } else if (trimDifferential) {
                derived.getMapping().clear();
            } else {
                for (ElementDefinitionMappingComponent t : derived.getMapping()) {
                    t.setUserData(DERIVATION_EQUALS, true);
                }
            }
        }
        for (ElementDefinitionMappingComponent m : base.getMapping()) {
            if (m.hasMap()) {
                m.setMap(m.getMap().trim());
            }
        }
        // todo: constraints are cumulative. there is no replacing
        for (ElementDefinitionConstraintComponent s : base.getConstraint()) {
            s.setUserData(IS_DERIVED, true);
            if (!s.hasSource()) {
                s.setSource(srcSD.getUrl());
            }
        }
        if (derived.hasConstraint()) {
            for (ElementDefinitionConstraintComponent s : derived.getConstraint()) {
                if (!base.hasConstraint(s.getKey())) {
                    ElementDefinitionConstraintComponent inv = s.copy();
                    base.getConstraint().add(inv);
                }
            }
        }
        for (IdType id : derived.getCondition()) {
            if (!base.hasCondition(id)) {
                base.getCondition().add(id);
            }
        }
        // now, check that we still have a bindable type; if not, delete the binding - see task 8477
        if (dest.hasBinding() && !hasBindableType(dest)) {
            dest.setBinding(null);
        }
        // finally, we copy any extensions from source to dest
        for (Extension ex : derived.getExtension()) {
            StructureDefinition sd = context.fetchResource(StructureDefinition.class, ex.getUrl());
            if (sd == null || sd.getSnapshot() == null || sd.getSnapshot().getElementFirstRep().getMax().equals("1")) {
                ToolingExtensions.removeExtension(dest, ex.getUrl());
            }
            dest.addExtension(ex.copy());
        }
    }
    if (dest.hasFixed()) {
        checkTypeOk(dest, dest.getFixed().fhirType(), srcSD);
    }
    if (dest.hasPattern()) {
        checkTypeOk(dest, dest.getPattern().fhirType(), srcSD);
    }
}

Example 50 with TypeRefComponent

use of org.hl7.fhir.dstu3.model.ElementDefinition.TypeRefComponent in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method typeSummary.

private String typeSummary(ElementDefinition ed) {
    StringBuilder b = new StringBuilder();
    boolean first = true;
    for (TypeRefComponent tr : ed.getType()) {
        if (first)
            first = false;
        else
            b.append("|");
        b.append(tr.getWorkingCode());
    }
    return b.toString();
}