Examples with UNKNOWN org.hl7.fhir.dstu3.model.Enumerations.AdministrativeGender.UNKNOWN used on opensource projects

Example 16 with UNKNOWN

use of org.hl7.fhir.dstu3.model.Enumerations.AdministrativeGender.UNKNOWN in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7FinancialInsuranceTest method testInsuranceCoverageUnknownRelationship.

@Test
// As part of the test, there is a valid code in IN2.72 that would create a related person, but it should be ignored.
void testInsuranceCoverageUnknownRelationship() throws IOException {
    String hl7message = "MSH|^~\\&|TEST|TEST|||20220101120000||DFT^P03|1234|P|2.6\n" + // + "EVN||20210407191342||||||\n"
    "PID|||workers_comp^^^XYZ^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "PV1||I||||||||||||||||||||||||||||||||||||||||||\n" + // FT1.7 is required transaction code (currently not used)
    "FT1||||20201231145045||CG|FAKE|||||||||||||||||||||||||||||||||||||\n" + // IN1.2.4, IN1.2.6 to second XV Coverage.identifier
    "IN1|1|Value1^^System3^Value4^^System6" + // IN1.5 through 15 NOT REFERENCED (Tested in testBasicInsuranceCoverageFields)
    "|IdValue1^^^IdSystem4^^^^|Large Blue Organization|||||||||||" + // IN1.18 through IN1.53 NOT REFERENCED
    "||05||||||||||||||||||||||||||||||||||||\n" + // IN2.1 through IN2.71 NOT REFERENCED
    "IN2||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||" + // A valid code in IN2.72 does not take priority over an invalid code in IN1.17.
    "04|\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> encounters = ResourceUtils.getResourceList(e, ResourceType.Encounter);
    // From PV1
    assertThat(encounters).hasSize(1);
    List<Resource> patients = ResourceUtils.getResourceList(e, ResourceType.Patient);
    // From PID
    assertThat(patients).hasSize(1);
    Patient patient = (Patient) patients.get(0);
    String patientId = patient.getId();
    List<Resource> organizations = ResourceUtils.getResourceList(e, ResourceType.Organization);
    // From Payor created by IN1
    assertThat(organizations).hasSize(1);
    Organization org = (Organization) organizations.get(0);
    // Check organization Id's
    assertThat(org.getIdentifier()).hasSize(1);
    // Org identifiers checked deeply in other tests
    List<Resource> coverages = ResourceUtils.getResourceList(e, ResourceType.Coverage);
    // From IN1 segment
    assertThat(coverages).hasSize(1);
    Coverage coverage = (Coverage) coverages.get(0);
    // Confirm Coverage Identifiers
    // XV, XV
    assertThat(coverage.getIdentifier()).hasSize(2);
    // Coverage Identifiers deep check in testBasicInsuranceCoverageFields
    // Because the relationship is 05, an unknown code, no subscriber is created
    assertThat(coverage.hasSubscriber()).isFalse();
    // Confirm Coverage Beneficiary references to Patient, and Payor references to Organization
    assertThat(coverage.getBeneficiary().getReference()).isEqualTo(patientId);
    assertThat(coverage.getPayorFirstRep().getReference()).isEqualTo(organizations.get(0).getId());
    // Expect no RelatedPerson because IN1.17 was an unknown code
    List<Resource> relatedPersons = ResourceUtils.getResourceList(e, ResourceType.RelatedPerson);
    // No related person should be created because IN1.17 was an unknown code
    assertThat(relatedPersons).isEmpty();
    // Check coverage.relationship (from SubscriberRelationship mapping)
    DatatypeUtils.checkCommonCodeableConceptAssertions(coverage.getRelationship(), "05", null, null, // IN1.17, because it is unkown there is no system or display.
    null);
    // Confirm there are no unaccounted for resources
    // Expected: Coverage, Organization, Patient, Encounter
    assertThat(e).hasSize(4);
}

Example 17 with UNKNOWN

use of org.hl7.fhir.dstu3.model.Enumerations.AdministrativeGender.UNKNOWN in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7OrderRequestFHIRConversionTest method testAdditionalOBRFieldsNoORCSegment.

@Test
void testAdditionalOBRFieldsNoORCSegment() {
    String hl7message = "MSH|^~\\&|Epic|ATRIUS|||20180924152907|34001|ORU^R01^ORU_R01|213|T|2.6|||||||||PHLabReport-Ack^^2.16.840.1.114222.4.10.3^ISO||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "PV1|1|E|||||||||||||||||||||||||||||||||||||||||||\n" + // ORC.15 is missing, so use OBR.7 as ServiceRequest.occurrenceDateTime
    "OBR|1|248648498^|248648498^|83036E^HEMOGLOBIN A1C^PACSEAP^^^^^^HEMOGLOBIN A1C|||20170707120707|20180808120808|||||||||||||||||F|||||||||||||||||||||||||\n";
    String json = ftv.convert(hl7message, PatientUtils.OPTIONS);
    assertThat(json).isNotBlank();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle bundle = (Bundle) bundleResource;
    List<BundleEntryComponent> e = bundle.getEntry();
    List<Resource> diagnosticReportList = ResourceUtils.getResourceList(e, ResourceType.DiagnosticReport);
    DiagnosticReport diagnosticReport = ResourceUtils.getResourceDiagnosticReport(diagnosticReportList.get(0), context);
    // OBR.7 and OBR.8 together map to DiagnosticReport.effectivePeriod
    assertThat(diagnosticReport.hasEffectivePeriod()).isTrue();
    assertThat(diagnosticReport.getEffectivePeriod().getStartElement().toString()).containsPattern("2017-07-07T12:07:07");
    assertThat(diagnosticReport.getEffectivePeriod().getEndElement().toString()).containsPattern("2018-08-08T12:08:08");
    List<Resource> serviceRequestList = e.stream().filter(v -> ResourceType.ServiceRequest == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    // Important that we have exactly one service request (no duplication).  OBR creates it as a reference.
    assertThat(serviceRequestList).hasSize(1);
    ServiceRequest serviceRequest = ResourceUtils.getResourceServiceRequest(serviceRequestList.get(0), context);
    assertThat(serviceRequest.hasStatus()).isTrue();
    // OBR.7 should create an ServiceRequest.occurrenceDateTime date
    assertThat(serviceRequest.hasOccurrenceDateTimeType()).isTrue();
    assertThat(serviceRequest.getOccurrenceDateTimeType().toString()).containsPattern("2017-07-07T12:07:07");
    // ORC.5 is missing, so serviceRequest.status() should be unknown
    assertThat(serviceRequest.hasStatus()).isTrue();
    assertThat(serviceRequest.getStatusElement().getCode()).isEqualTo("unknown");
}

Example 18 with UNKNOWN

use of org.hl7.fhir.dstu3.model.Enumerations.AdministrativeGender.UNKNOWN in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7ServiceRequestFHIRConversionTest method test_ppr_pc1_service_request.

@Test
void test_ppr_pc1_service_request() throws IOException {
    // Currently only tests limited items, TODO add tests for other field
    String hl7message = "MSH|^~\\&|SendTest1|Sendfac1|Receiveapp1|Receivefac1|202101010000|security|PPR^PC1^PPR_PC1|1|P^I|2.6||||||ASCII||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F|||||||||||||||||||||\n" + "PV1||I|6N^1234^A^GENHOS|||||||SUR||||||||S||||||||||||||||||||||||||\n" + "PRB|AD||202101010000|aortic stenosis|53692||2|||202101010000\n" + "OBX|1|NM|111^TotalProtein||7.5|gm/dl|5.9-8.4||||W\n" + "ORC|NW|1000^OE|9999999^RX||SC|E|^Q6H^D10^^^R\n" + "OBR|1|TESTID|TESTID|||202101010000|202101010000||||||||||||||||||F||||||WEAKNESS||||||||||||\n" + "OBX|1|TX|||ECHOCARDIOGRAPHIC REPORT||||||F|||202101010000|||\n" + "OBX|2|TX|||NORMAL LV CHAMBER SIZE WITH MILD CONCENTRIC LVH||||||F|||202101010000|||\n";
    String json = ftv.convert(hl7message, OPTIONS);
    assertThat(json).isNotBlank();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    Bundle b = (Bundle) bundleResource;
    List<BundleEntryComponent> e = b.getEntry();
    // OBX under PRB (the PROBLEM.PROBLEM_OBSERVATION.OBSERVATION) creates an Observation resource
    // Verifying this OBX to assure ServiceRequest is using correct OBX information
    List<Resource> obsResource = e.stream().filter(v -> ResourceType.Observation == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    Observation o = (Observation) obsResource.get(0);
    assertEquals("111", o.getCode().getCodingFirstRep().getCode());
    assertEquals("TotalProtein", o.getCode().getText());
    // From OBX.11 'W'
    assertEquals("Entered in Error", o.getStatus().getDisplay());
    List<Resource> serviceRequestResource = e.stream().filter(v -> ResourceType.ServiceRequest == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    ServiceRequest sr = (ServiceRequest) serviceRequestResource.get(0);
    assertEquals(1, serviceRequestResource.size());
    // From ORC.5 'SC'
    assertEquals("Active", sr.getStatus().getDisplay());
    // Ensure the intent is set to "order" for all messages
    assertEquals("order", sr.getIntentElement().getValueAsString());
    // status defaults to "unknown"
    hl7message = "MSH|^~\\&|SendTest1|Sendfac1|Receiveapp1|Receivefac1|202101010000|security|PPR^PC1^PPR_PC1|1|P^I|2.6||||||ASCII||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F|||||||||||||||||||||\n" + "PV1||I|6N^1234^A^GENHOS|||||||SUR||||||||S||||||||||||||||||||||||||\n" + "PRB|AD||202101010000|aortic stenosis|53692||2|||202101010000\n" + "ORC|NW|1000^OE|9999999^RX|||E|^Q6H^D10^^^R\n";
    json = ftv.convert(hl7message, OPTIONS);
    assertThat(json).isNotBlank();
    bundleResource = context.getParser().parseResource(json);
    b = (Bundle) bundleResource;
    e = b.getEntry();
    serviceRequestResource = e.stream().filter(v -> ResourceType.ServiceRequest == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    sr = (ServiceRequest) serviceRequestResource.get(0);
    // Default since no OBX in message
    assertEquals("Unknown", sr.getStatus().getDisplay());
}

Example 19 with UNKNOWN

use of org.hl7.fhir.dstu3.model.Enumerations.AdministrativeGender.UNKNOWN in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method testMedicationRequestReasonCode.

@Test
void testMedicationRequestReasonCode() {
    // Reason code from RXO.20, should ignore ORC.16
    String hl7message = "MSH|^~\\&||||||S1|PPR^PC1||T|2.6|||||||||\r" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\r" + "PV1||I||||||||||||||||||||||||||||||||||||||||||\r" + "PRB|AD|20141015103243|15777000^Prediabetes (disorder)^SNM|654321^^OtherSoftware.ProblemOID|||||\r" + // ORC.16 purposely present to be ignored because RXO.20 is present
    "ORC|NW|||||||||||||||4338008^Wheezing^PRN\r" + "OBR|1|||555|||20170825010500||||||||||||||||||F\r" + // RXO.2 through RXO.35 otherwise purposely empty
    "RXO|65862-063-01^METOPROLOL TARTRATE^NDC|||||||||||||||||||134006\r";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    assertThat(medicationRequest.getReasonCode()).hasSize(1);
    assertThat(medicationRequest.getReasonCodeFirstRep().getCoding()).hasSize(1);
    // RXO.20.1
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getCode()).isEqualTo("134006");
    // No RXO.20.2
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getDisplay()).isNull();
    // No RXO.20.3
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getSystem()).isNull();
    // Reason code from RXE.27. Ignores ORC.16.
    hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // ORC.16 purposely present to be ignored because RXE.27 is present
    "ORC|NW|||||||||||||||4338008^Wheezing^PRN\n" + // RXE.6 through RXE.44 otherwise purposely empty
    "RXE|^Q24H&0600^^20210330144208^^ROU|DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|3||mL||||||||||||||||||||||Wheezing^Wheezing^PRN|||||||||||||\r";
    e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    assertThat(medicationRequest.getReasonCode()).hasSize(1);
    assertThat(medicationRequest.getReasonCodeFirstRep().getCoding()).hasSize(1);
    // RXE.27
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getCode()).isEqualTo("Wheezing");
    // RXE.27
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getDisplay()).isEqualTo("Wheezing");
    // RXE.27
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getSystem()).isEqualTo("urn:id:PRN");
    // Reason code from ORC.16 (when RXE.27 is not present)
    hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // ORC.16 to reason code
    "ORC|NW|||||||||||||||4338008^Wheezing^PRN\n" + // RXE.6 through RXE.44 purposely empty
    "RXE|^Q24H&0600^^20210330144208^^ROU|DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|3||mL|||||||||||||||||||||||||||||||||||\n";
    e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    assertThat(medicationRequest.getReasonCode()).hasSize(1);
    assertThat(medicationRequest.getReasonCodeFirstRep().getCoding()).hasSize(1);
    // ORC.16.1
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getCode()).isEqualTo("4338008");
    // ORC.16.2
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getDisplay()).isEqualTo("Wheezing");
    // ORC.16.3 (unknown system)
    assertThat(medicationRequest.getReasonCodeFirstRep().getCodingFirstRep().getSystem()).isEqualTo("urn:id:PRN");
}

Example 20 with UNKNOWN

use of org.hl7.fhir.dstu3.model.Enumerations.AdministrativeGender.UNKNOWN in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7OrderRequestFHIRConversionTest method testBroadORCPlusOBRFields2.

@Test
void testBroadORCPlusOBRFields2() {
    String hl7message = "MSH|^~\\&|||||20180924152907|34001|ORU^R01^ORU_R01|213|T|2.6|||||||||||\n" + // PID.18 is empty, MSH.7 will be used as identifier visit number
    "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // PV1.19  is empty, MSH.7 will be used as identifier visit number
    "PV1|1|E|||||||||||||||||||||||||||||||||||||||||||\n" + // ORC.5 with purposely bad code to see that 'unknown' is result
    "ORC|RE|248648498^|248648498^||ZZ||||20120628071200||||||||||||||||||||||\n" + "OBR|1|248648498^|248648498^|83036E^HEMOGLOBIN A1C^PACSEAP^^^^^^HEMOGLOBIN A1C|||||||L||||||||||||||F||^^^20120606120606|||||||||||||||||||||||\n";
    String json = ftv.convert(hl7message, PatientUtils.OPTIONS);
    assertThat(json).isNotBlank();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle bundle = (Bundle) bundleResource;
    List<BundleEntryComponent> e = bundle.getEntry();
    List<Resource> serviceRequestList = e.stream().filter(v -> ResourceType.ServiceRequest == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    // Important that we have exactly one service request (no duplication).  OBR creates it as a reference.
    assertThat(serviceRequestList).hasSize(1);
    ServiceRequest serviceRequest = ResourceUtils.getResourceServiceRequest(serviceRequestList.get(0), context);
    assertThat(serviceRequest.hasStatus()).isTrue();
    assertThat(serviceRequest.hasIdentifier()).isTrue();
    assertThat(serviceRequest.getIdentifier()).hasSize(3);
    // Identifier 1: visit number should be set by in this test by tertiary MSH.7
    // See notes about identifier testing in previous tests
    Identifier identifier = serviceRequest.getIdentifier().get(0);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // MSH.7 as a string, not as a date
    assertThat(value).isEqualTo("20180924152907");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // OBR.27[0].4 should create an ServiceRequest.occurrenceDateTime date
    assertThat(serviceRequest.hasOccurrenceDateTimeType()).isTrue();
    assertThat(serviceRequest.getOccurrenceDateTimeType().toString()).containsPattern("2012-06-06T12:06:06");
    // // ORC.5 creates the serviceRequest.status() purposely an unknown code
    assertThat(serviceRequest.hasStatus()).isTrue();
    assertThat(serviceRequest.getStatusElement().getCode()).isEqualTo("unknown");
}