use of org.hl7.fhir.dstu3.model.Identifier in project gpconnect-demonstrator by nhsconnect.
the class ScheduleResourceProvider method scheduleDetailToScheduleResourceConverter.
private Schedule scheduleDetailToScheduleResourceConverter(ScheduleDetail scheduleDetail) {
Schedule schedule = new Schedule();
String resourceId = String.valueOf(scheduleDetail.getId());
String versionId = String.valueOf(scheduleDetail.getLastUpdated().getTime());
String resourceType = schedule.getResourceType().toString();
IdType id = new IdType(resourceType, resourceId, versionId);
schedule.setId(id);
schedule.getMeta().setVersionId(versionId);
schedule.getMeta().setLastUpdated(scheduleDetail.getLastUpdated());
if (scheduleDetail.getPractitionerId() != null) {
schedule.addActor(new Reference("Practitioner/" + scheduleDetail.getPractitionerId()));
}
if (scheduleDetail.getPractitionerRoleCode() != null) {
Coding roleCoding = new Coding(SystemURL.VS_GPC_PRACTITIONER_ROLE, scheduleDetail.getPractitionerRoleCode(), scheduleDetail.getPractitionerRoleDisplay());
Extension practitionerRoleExtension = new Extension(SystemURL.SD_EXTENSION_GPC_PRACTITIONER_ROLE, new CodeableConcept().addCoding(roleCoding));
schedule.addExtension(practitionerRoleExtension);
}
// # 194
// Identifier identifier = new Identifier();
// identifier.setSystem(SystemURL.ID_GPC_SCHEDULE_IDENTIFIER);
// identifier.setValue(scheduleDetail.getIdentifier());
// schedule.addIdentifier(identifier);
Coding coding = new Coding().setSystem(SystemURL.HL7_VS_C80_PRACTICE_CODES).setCode(scheduleDetail.getTypeCode()).setDisplay(scheduleDetail.getTypeDescription());
CodeableConcept codableConcept = new CodeableConcept().addCoding(coding);
codableConcept.setText(scheduleDetail.getTypeDescription());
schedule.addActor(new Reference("Location/" + scheduleDetail.getLocationId()));
Period period = new Period();
period.setStart(scheduleDetail.getStartDateTime());
period.setEnd(scheduleDetail.getEndDateTime());
schedule.setPlanningHorizon(period);
// 1.2.7 remove comment
// schedule.setComment(scheduleDetail.getComment());
// 1.2.7 add schedule type description as service category
schedule.setServiceCategory(new CodeableConcept().setText(scheduleDetail.getTypeDescription()));
return schedule;
}
use of org.hl7.fhir.dstu3.model.Identifier in project gpconnect-demonstrator by nhsconnect.
the class MedicationRequestResourceProvider method getMedicationRequestFromDetail.
private MedicationRequest getMedicationRequestFromDetail(MedicationRequestDetail requestDetail) {
MedicationRequest medicationRequest = new MedicationRequest();
medicationRequest.setId(requestDetail.getId().toString());
List<Identifier> identifiers = new ArrayList<>();
Identifier identifier = new Identifier().setSystem("https://fhir.nhs.uk/Id/cross-care-setting-identifier").setValue(requestDetail.getGuid());
identifiers.add(identifier);
medicationRequest.setIdentifier(identifiers);
medicationRequest.setMeta(new Meta().addProfile(SystemURL.SD_GPC_MEDICATION_REQUEST));
setBasedOnReferences(medicationRequest, requestDetail);
if (requestDetail.getPrescriptionTypeCode().contains("repeat")) {
medicationRequest.setGroupIdentifier(new Identifier().setValue(requestDetail.getGroupIdentifier()));
}
try {
medicationRequest.setStatus(MedicationRequestStatus.fromCode(requestDetail.getStatusCode()));
} catch (FHIRException e) {
throw new UnprocessableEntityException(e.getMessage());
}
try {
medicationRequest.setIntent(MedicationRequestIntent.fromCode(requestDetail.getIntentCode()));
} catch (FHIRException e) {
throw new UnprocessableEntityException(e.getMessage());
}
if (requestDetail.getMedicationId() != null) {
medicationRequest.setMedication(new Reference(new IdType("Medication", requestDetail.getMedicationId())));
}
if (requestDetail.getPatientId() != null) {
medicationRequest.setSubject(new Reference(new IdType("Patient", requestDetail.getPatientId())));
}
if (requestDetail.getAuthorisingPractitionerId() != null) {
medicationRequest.setRecorder(new Reference(new IdType("Practitioner", requestDetail.getAuthorisingPractitionerId())));
}
if (requestDetail.getPriorMedicationRequestId() != null) {
medicationRequest.setPriorPrescription(new Reference(new IdType("MedicationRequest", requestDetail.getPriorMedicationRequestId())));
}
medicationRequest.setAuthoredOn(requestDetail.getAuthoredOn());
medicationRequest.setDispenseRequest(getDispenseRequestComponent(requestDetail));
// medicationRequest.setRequester(getRequesterComponent(requestDetail)); //TODO - spec needs to clarify whether this should be populated or not
setReasonCodes(medicationRequest, requestDetail);
setNotes(medicationRequest, requestDetail);
if (medicationRequest.getIntent() != MedicationRequestIntent.ORDER) {
setRepeatInformation(medicationRequest, requestDetail);
}
setPrescriptionType(medicationRequest, requestDetail);
setStatusReason(medicationRequest, requestDetail);
String dosageInstructionText = requestDetail.getDosageText();
medicationRequest.addDosageInstruction(new Dosage().setText(dosageInstructionText == null || dosageInstructionText.trim().isEmpty() ? NO_INFORMATION_AVAILABLE : dosageInstructionText).setPatientInstruction(requestDetail.getDosageInstructions()));
return medicationRequest;
}
use of org.hl7.fhir.dstu3.model.Identifier in project gpconnect-demonstrator by nhsconnect.
the class OrganizationResourceProvider method convertOrganizatonDetailsListToOrganizationList.
private List<Organization> convertOrganizatonDetailsListToOrganizationList(List<OrganizationDetails> organizationDetails) {
Map<Long, Organization> map = new HashMap<>();
for (OrganizationDetails organizationDetail : organizationDetails) {
// Changed key to be logical id rather than ods code since can have > 1 org per ods code
// for 1.2.2
Long mapKey = organizationDetail.getId();
if (map.containsKey(mapKey)) {
continue;
}
Identifier identifier = new Identifier().setSystem(SystemURL.ID_ODS_ORGANIZATION_CODE).setValue(organizationDetail.getOrgCode());
Organization organization = new Organization().setName(organizationDetail.getOrgName()).addIdentifier(identifier);
String resourceId = String.valueOf(organizationDetail.getId());
String versionId = String.valueOf(organizationDetail.getLastUpdated().getTime());
String resourceType = organization.getResourceType().toString();
IdType id = new IdType(resourceType, resourceId, versionId);
organization.setId(id);
organization.getMeta().setVersionId(versionId);
organization.getMeta().setLastUpdated(organizationDetail.getLastUpdated());
organization.getMeta().addProfile(SystemURL.SD_GPC_ORGANIZATION);
organization = addAdditionalProperties(organization);
map.put(mapKey, organization);
}
return new ArrayList<>(map.values());
}
use of org.hl7.fhir.dstu3.model.Identifier in project loinc2hpo by monarch-initiative.
the class FhirResourceRetriever method retrievePatientFromServer.
/**
* Retrieve a patient from the reference field of an observation
* @param subject
* @return
*/
public static Patient retrievePatientFromServer(Reference subject) throws SubjectNotFoundException, AmbiguousSubjectException {
List<Patient> patients = new ArrayList<>();
if (subject.hasReference()) {
String ref = subject.getReference();
if (!ref.startsWith(BASEURL) && ref.startsWith("Patient")) {
ref = BASEURL + "/" + ref;
}
Bundle patientBundle = client.search().byUrl(ref).returnBundle(Bundle.class).execute();
while (true) {
patientBundle.getEntry().forEach(p -> patients.add((Patient) p.getResource()));
if (patientBundle.getLink(IBaseBundle.LINK_NEXT) != null) {
patientBundle = client.loadPage().next(patientBundle).execute();
} else {
break;
}
}
} else if (subject.hasIdentifier()) {
Identifier identifier = subject.getIdentifier();
// TODO: find patient through the identifier
}
if (patients.size() == 1) {
return patients.iterator().next();
} else if (patients.isEmpty()) {
throw new SubjectNotFoundException("Expect one subject, but found none");
} else {
throw new AmbiguousSubjectException("Except one subject, but found multiple");
}
}
use of org.hl7.fhir.dstu3.model.Identifier in project gpconnect-demonstrator by nhsconnect.
the class LocationResourceProvider method locationDetailsToLocation.
/**
* convert locationDetails to fhir resource
* @param locationDetails
* @return Location resource
*/
private Location locationDetailsToLocation(LocationDetails locationDetails) {
Location location = new Location();
String resourceId = String.valueOf(locationDetails.getId());
String versionId = String.valueOf(locationDetails.getLastUpdated().getTime());
String resourceType = location.getResourceType().toString();
IdType id = new IdType(resourceType, resourceId, versionId);
location.setId(id);
location.getMeta().setVersionId(versionId);
location.getMeta().setLastUpdated(locationDetails.getLastUpdated());
location.getMeta().addProfile(SystemURL.SD_GPC_LOCATION);
location.setName(locationDetails.getName());
// #207 no site code
// location.setIdentifier(Collections.singletonList(new Identifier().setSystem(SystemURL.ID_ODS_SITE_CODE).setValue(locationDetails.getSiteOdsCode())));
// #246 remove type element
// Coding locationCommTypeCode = new Coding();
// locationCommTypeCode.setCode("COMM");
// locationCommTypeCode.setSystem(SystemURL.VS_CC_SER_DEL_LOCROLETYPE);
// locationCommTypeCode.setDisplay("Community Location");
//
// Coding locationGachTypeCode = new Coding();
// locationGachTypeCode.setCode("GACH");
// locationGachTypeCode.setSystem(SystemURL.VS_CC_SER_DEL_LOCROLETYPE);
// locationGachTypeCode.setDisplay("Hospitals; General Acute Care Hospital");
//
// @SuppressWarnings("deprecation")
// CodeableConcept locationType = new CodeableConcept();
// locationType.addCoding(locationCommTypeCode);
// locationType.addCoding(locationGachTypeCode);
// location.setType(locationType);
Organization orgz = FindOrganization(locationDetails.getOrgOdsCode());
if (orgz != null) {
Reference mngOrg = new Reference();
mngOrg.setReference(orgz.getId());
// #246 remove display element
// mngOrg.setDisplay(orgz.getName());
location.setManagingOrganization(mngOrg);
}
EnumSet<LocationStatus> statusList = EnumSet.allOf(LocationStatus.class);
LocationStatus locationStatus = null;
String status = locationDetails.getStatus();
if (status != null) {
for (LocationStatus statusItem : statusList) {
if (statusItem.toCode().equalsIgnoreCase(status)) {
locationStatus = statusItem;
break;
}
}
}
location.setAddress(createAddress(locationDetails));
location.setStatus(locationStatus);
return location;
}
Aggregations