Examples with PatientCommunicationComponent org.hl7.fhir.dstu3.model.Patient.PatientCommunicationComponent used on opensource projects

Example 1 with PatientCommunicationComponent

use of org.hl7.fhir.dstu3.model.Patient.PatientCommunicationComponent in project MobileAccessGateway by i4mi.

the class Iti93AddRequestConverter method doCreate.

/**
 * add a new patient
 * @param header
 * @param entriesByReference
 * @return
 * @throws JAXBException
 */
public String doCreate(MessageHeader header, Map<String, BundleEntryComponent> entriesByReference) throws JAXBException {
    PRPAIN201301UV02Type resultMsg = new PRPAIN201301UV02Type();
    resultMsg.setITSVersion("XML_1.0");
    // String UUID.randomUUID().toString();
    resultMsg.setId(new II(config.getPixQueryOid(), uniqueId()));
    // Now
    resultMsg.setCreationTime(new TS(Timestamp.now().toHL7()));
    resultMsg.setProcessingCode(new CS("T", null, null));
    resultMsg.setProcessingModeCode(new CS("T", null, null));
    resultMsg.setInteractionId(new II("2.16.840.1.113883.1.18", "PRPA_IN201301UV02"));
    resultMsg.setAcceptAckCode(new CS("AL", null, null));
    MCCIMT000100UV01Receiver receiver = new MCCIMT000100UV01Receiver();
    resultMsg.addReceiver(receiver);
    receiver.setTypeCode(CommunicationFunctionType.RCV);
    MCCIMT000100UV01Device receiverDevice = new MCCIMT000100UV01Device();
    receiver.setDevice(receiverDevice);
    receiverDevice.setClassCode(EntityClassDevice.DEV);
    receiverDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    receiverDevice.setId(Collections.singletonList(new II(config.getPixReceiverOid(), null)));
    MCCIMT000100UV01Sender sender = new MCCIMT000100UV01Sender();
    resultMsg.setSender(sender);
    sender.setTypeCode(CommunicationFunctionType.SND);
    MCCIMT000100UV01Device senderDevice = new MCCIMT000100UV01Device();
    sender.setDevice(senderDevice);
    senderDevice.setClassCode(EntityClassDevice.DEV);
    senderDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    senderDevice.setId(Collections.singletonList(new II(config.getPixMySenderOid(), null)));
    PRPAIN201301UV02MFMIMT700701UV01ControlActProcess controlActProcess = new PRPAIN201301UV02MFMIMT700701UV01ControlActProcess();
    resultMsg.setControlActProcess(controlActProcess);
    controlActProcess.setClassCode(ActClassControlAct.CACT);
    controlActProcess.setMoodCode(XActMoodIntentEvent.EVN);
    controlActProcess.setCode(new CD("PRPA_TE201301UV02", null, "2.16.840.1.113883.1.18"));
    for (BundleEntryComponent entry : entriesByReference.values()) {
        if (entry.getResource() instanceof Patient) {
            HTTPVerb method = entry.getRequest().getMethod();
            if (method == null)
                throw new InvalidRequestException("HTTP verb missing in Bundle for Patient resource.");
            Patient in = (Patient) entry.getResource();
            PRPAIN201301UV02MFMIMT700701UV01Subject1 subject = new PRPAIN201301UV02MFMIMT700701UV01Subject1();
            controlActProcess.addSubject(subject);
            subject.setTypeCode("SUBJ");
            // ???
            subject.setContextConductionInd(false);
            PRPAIN201301UV02MFMIMT700701UV01RegistrationEvent registrationEvent = new PRPAIN201301UV02MFMIMT700701UV01RegistrationEvent();
            subject.setRegistrationEvent(registrationEvent);
            registrationEvent.setClassCode(ActClass.REG);
            registrationEvent.setMoodCode(ActMood.EVN);
            // ???
            registrationEvent.setStatusCode(new CS("active", null, null));
            PRPAIN201301UV02MFMIMT700701UV01Subject2 subject1 = new PRPAIN201301UV02MFMIMT700701UV01Subject2();
            registrationEvent.setSubject1(subject1);
            subject1.setTypeCode(ParticipationTargetSubject.SBJ);
            PRPAMT201301UV02Patient patient = new PRPAMT201301UV02Patient();
            subject1.setPatient(patient);
            patient.setClassCode("PAT");
            // ???
            patient.setStatusCode(new CS("active", null, null));
            PRPAMT201301UV02Person patientPerson = new PRPAMT201301UV02Person();
            patient.setPatientPerson(patientPerson);
            patientPerson.setClassCode(EntityClass.PSN);
            patientPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
            // TODO How is the correct mapping done?
            for (Identifier id : in.getIdentifier()) {
                patient.addId(patientIdentifier(id));
            }
            for (HumanName name : in.getName()) {
                patientPerson.addName(transform(name));
            }
            patientPerson.setBirthTime(transform(in.getBirthDateElement()));
            if (in.hasGender()) {
                switch(in.getGender()) {
                    case MALE:
                        patientPerson.setAdministrativeGenderCode(new CE("M", "Male", "2.16.840.1.113883.12.1"));
                        break;
                    case FEMALE:
                        patientPerson.setAdministrativeGenderCode(new CE("F", "Female", "2.16.840.1.113883.12.1"));
                        break;
                    case OTHER:
                        patientPerson.setAdministrativeGenderCode(new CE("A", "Ambiguous", "2.16.840.1.113883.12.1"));
                        break;
                    case UNKNOWN:
                        patientPerson.setAdministrativeGenderCode(new CE("U", "Unknown", "2.16.840.1.113883.12.1"));
                        break;
                }
            }
            if (in.hasAddress())
                patientPerson.setAddr(new ArrayList<AD>());
            for (Address address : in.getAddress()) {
                patientPerson.addAddr(transform(address));
            }
            for (ContactPoint contactPoint : in.getTelecom()) {
                patientPerson.addTelecom(transform(contactPoint));
            }
            List<II> orgIds = new ArrayList<II>();
            Organization managingOrg = getManagingOrganization(in);
            // NULL POINTER CHECK
            for (Identifier id : managingOrg.getIdentifier()) {
                orgIds.add(new II(getScheme(id.getSystem()), null));
            }
            if (in.hasDeceasedBooleanType()) {
                patientPerson.setDeceasedInd(new BL(in.getDeceasedBooleanType().getValue()));
            }
            if (in.hasDeceasedDateTimeType()) {
                patientPerson.setDeceasedTime(transform(in.getDeceasedDateTimeType()));
            }
            if (in.hasMultipleBirthBooleanType()) {
                patientPerson.setMultipleBirthInd(new BL(in.getMultipleBirthBooleanType().getValue()));
            }
            if (in.hasMultipleBirthIntegerType()) {
                patientPerson.setMultipleBirthOrderNumber(new INT(in.getMultipleBirthIntegerType().getValue()));
            }
            if (in.hasMaritalStatus()) {
                patientPerson.setMaritalStatusCode(transform(in.getMaritalStatus()));
            }
            if (in.hasCommunication()) {
                for (PatientCommunicationComponent pcc : in.getCommunication()) {
                    PRPAMT201301UV02LanguageCommunication languageCommunication = new PRPAMT201301UV02LanguageCommunication();
                    languageCommunication.setLanguageCode(transform(pcc.getLanguage()));
                    // NULL POINTER EXCEPTION
                    if (pcc.hasPreferred())
                        languageCommunication.setPreferenceInd(new BL(pcc.getPreferred()));
                    patientPerson.addLanguageCommunication(languageCommunication);
                }
            }
            COCTMT150003UV03Organization providerOrganization = new COCTMT150003UV03Organization();
            patient.setProviderOrganization(providerOrganization);
            providerOrganization.setClassCode(EntityClassOrganization.ORG);
            providerOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
            providerOrganization.setId(orgIds);
            ON name = null;
            if (managingOrg.hasName()) {
                name = new ON();
                name.setMixed(Collections.singletonList(managingOrg.getName()));
                providerOrganization.setName(Collections.singletonList(name));
            }
            COCTMT150003UV03ContactParty contactParty = new COCTMT150003UV03ContactParty();
            contactParty.setClassCode(RoleClassContact.CON);
            for (ContactPoint contactPoint : managingOrg.getTelecom()) {
                contactParty.addTelecom(transform(contactPoint));
            }
            if (managingOrg.hasAddress())
                contactParty.setAddr(new ArrayList<AD>());
            for (Address address : managingOrg.getAddress()) {
                contactParty.addAddr(transform(address));
            }
            if (managingOrg.hasContact()) {
                OrganizationContactComponent occ = managingOrg.getContactFirstRep();
                COCTMT150003UV03Person contactPerson = new COCTMT150003UV03Person();
                contactPerson.setClassCode(EntityClass.PSN);
                contactPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
                if (occ.hasName())
                    contactPerson.setName(Collections.singletonList(transform(occ.getName())));
                contactParty.setContactPerson(contactPerson);
            }
            providerOrganization.setContactParty(Collections.singletonList(contactParty));
            MFMIMT700701UV01Custodian custodian = new MFMIMT700701UV01Custodian();
            registrationEvent.setCustodian(custodian);
            custodian.setTypeCode(ParticipationType.CST);
            COCTMT090003UV01AssignedEntity assignedEntity = new COCTMT090003UV01AssignedEntity();
            custodian.setAssignedEntity(assignedEntity);
            assignedEntity.setClassCode(RoleClassAssignedEntity.ASSIGNED);
            List<II> custIds = new ArrayList<II>();
            custIds.add(new II(getScheme(config.getCustodianOid()), null));
            assignedEntity.setId(custIds);
            // assignedEntity.setId(orgIds);
            COCTMT090003UV01Organization assignedOrganization = new COCTMT090003UV01Organization();
            assignedEntity.setAssignedOrganization(assignedOrganization);
            assignedOrganization.setClassCode(EntityClassOrganization.ORG);
            assignedOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
            if (managingOrg.hasName()) {
                assignedOrganization.setName(Collections.singletonList(name));
            }
        }
    }
    ByteArrayOutputStream out = new ByteArrayOutputStream();
    HL7V3Transformer.marshallMessage(PRPAIN201301UV02Type.class, out, resultMsg);
    String outArray = new String(out.toByteArray());
    return outArray;
}

Example 2 with PatientCommunicationComponent

use of org.hl7.fhir.dstu3.model.Patient.PatientCommunicationComponent in project MobileAccessGateway by i4mi.

the class Iti104AddRequestConverter method doCreate.

/**
 * add a new patient
 * @param header
 * @param entriesByReference
 * @return
 * @throws JAXBException
 */
public String doCreate(Patient in, Identifier identifier) throws JAXBException {
    PRPAIN201301UV02Type resultMsg = new PRPAIN201301UV02Type();
    resultMsg.setITSVersion("XML_1.0");
    // String UUID.randomUUID().toString();
    resultMsg.setId(new II(config.getPixQueryOid(), uniqueId()));
    // Now
    resultMsg.setCreationTime(new TS(Timestamp.now().toHL7()));
    resultMsg.setProcessingCode(new CS("T", null, null));
    resultMsg.setProcessingModeCode(new CS("T", null, null));
    resultMsg.setInteractionId(new II("2.16.840.1.113883.1.18", "PRPA_IN201301UV02"));
    resultMsg.setAcceptAckCode(new CS("AL", null, null));
    MCCIMT000100UV01Receiver receiver = new MCCIMT000100UV01Receiver();
    resultMsg.addReceiver(receiver);
    receiver.setTypeCode(CommunicationFunctionType.RCV);
    MCCIMT000100UV01Device receiverDevice = new MCCIMT000100UV01Device();
    receiver.setDevice(receiverDevice);
    receiverDevice.setClassCode(EntityClassDevice.DEV);
    receiverDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    receiverDevice.setId(Collections.singletonList(new II(config.getPixReceiverOid(), null)));
    MCCIMT000100UV01Sender sender = new MCCIMT000100UV01Sender();
    resultMsg.setSender(sender);
    sender.setTypeCode(CommunicationFunctionType.SND);
    MCCIMT000100UV01Device senderDevice = new MCCIMT000100UV01Device();
    sender.setDevice(senderDevice);
    senderDevice.setClassCode(EntityClassDevice.DEV);
    senderDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    senderDevice.setId(Collections.singletonList(new II(config.getPixMySenderOid(), null)));
    PRPAIN201301UV02MFMIMT700701UV01ControlActProcess controlActProcess = new PRPAIN201301UV02MFMIMT700701UV01ControlActProcess();
    resultMsg.setControlActProcess(controlActProcess);
    controlActProcess.setClassCode(ActClassControlAct.CACT);
    controlActProcess.setMoodCode(XActMoodIntentEvent.EVN);
    controlActProcess.setCode(new CD("PRPA_TE201301UV02", null, "2.16.840.1.113883.1.18"));
    PRPAIN201301UV02MFMIMT700701UV01Subject1 subject = new PRPAIN201301UV02MFMIMT700701UV01Subject1();
    controlActProcess.addSubject(subject);
    subject.setTypeCode("SUBJ");
    // ???
    subject.setContextConductionInd(false);
    PRPAIN201301UV02MFMIMT700701UV01RegistrationEvent registrationEvent = new PRPAIN201301UV02MFMIMT700701UV01RegistrationEvent();
    subject.setRegistrationEvent(registrationEvent);
    registrationEvent.setClassCode(ActClass.REG);
    registrationEvent.setMoodCode(ActMood.EVN);
    // ???
    registrationEvent.setStatusCode(new CS("active", null, null));
    PRPAIN201301UV02MFMIMT700701UV01Subject2 subject1 = new PRPAIN201301UV02MFMIMT700701UV01Subject2();
    registrationEvent.setSubject1(subject1);
    subject1.setTypeCode(ParticipationTargetSubject.SBJ);
    PRPAMT201301UV02Patient patient = new PRPAMT201301UV02Patient();
    subject1.setPatient(patient);
    patient.setClassCode("PAT");
    // ???
    patient.setStatusCode(new CS("active", null, null));
    PRPAMT201301UV02Person patientPerson = new PRPAMT201301UV02Person();
    patient.setPatientPerson(patientPerson);
    patientPerson.setClassCode(EntityClass.PSN);
    patientPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
    patient.addId(patientIdentifier(identifier));
    // TODO How is the correct mapping done?
    for (Identifier id : in.getIdentifier()) {
        patient.addId(patientIdentifier(id));
    }
    for (HumanName name : in.getName()) {
        patientPerson.addName(transform(name));
    }
    patientPerson.setBirthTime(transform(in.getBirthDateElement()));
    if (in.hasGender()) {
        switch(in.getGender()) {
            case MALE:
                patientPerson.setAdministrativeGenderCode(new CE("M", "Male", "2.16.840.1.113883.12.1"));
                break;
            case FEMALE:
                patientPerson.setAdministrativeGenderCode(new CE("F", "Female", "2.16.840.1.113883.12.1"));
                break;
            case OTHER:
                patientPerson.setAdministrativeGenderCode(new CE("A", "Ambiguous", "2.16.840.1.113883.12.1"));
                break;
            case UNKNOWN:
                patientPerson.setAdministrativeGenderCode(new CE("U", "Unknown", "2.16.840.1.113883.12.1"));
                break;
        }
    }
    if (in.hasAddress())
        patientPerson.setAddr(new ArrayList<AD>());
    for (Address address : in.getAddress()) {
        patientPerson.addAddr(transform(address));
    }
    for (ContactPoint contactPoint : in.getTelecom()) {
        patientPerson.addTelecom(transform(contactPoint));
    }
    List<II> orgIds = new ArrayList<II>();
    Organization managingOrg = getManagingOrganization(in);
    // NULL POINTER CHECK
    if (managingOrg != null) {
        for (Identifier id : managingOrg.getIdentifier()) {
            orgIds.add(new II(getScheme(id.getSystem()), null));
        }
    } else {
        Reference org = in.getManagingOrganization();
        if (org != null && org.getIdentifier() != null) {
            orgIds.add(new II(getScheme(org.getIdentifier().getSystem()), null));
        }
    }
    if (in.hasDeceasedBooleanType()) {
        patientPerson.setDeceasedInd(new BL(in.getDeceasedBooleanType().getValue()));
    }
    if (in.hasDeceasedDateTimeType()) {
        patientPerson.setDeceasedTime(transform(in.getDeceasedDateTimeType()));
    }
    if (in.hasMultipleBirthBooleanType()) {
        patientPerson.setMultipleBirthInd(new BL(in.getMultipleBirthBooleanType().getValue()));
    }
    if (in.hasMultipleBirthIntegerType()) {
        patientPerson.setMultipleBirthOrderNumber(new INT(in.getMultipleBirthIntegerType().getValue()));
    }
    if (in.hasMaritalStatus()) {
        patientPerson.setMaritalStatusCode(transform(in.getMaritalStatus()));
    }
    if (in.hasCommunication()) {
        for (PatientCommunicationComponent pcc : in.getCommunication()) {
            PRPAMT201301UV02LanguageCommunication languageCommunication = new PRPAMT201301UV02LanguageCommunication();
            languageCommunication.setLanguageCode(transform(pcc.getLanguage()));
            // NULL POINTER EXCEPTION
            if (pcc.hasPreferred())
                languageCommunication.setPreferenceInd(new BL(pcc.getPreferred()));
            patientPerson.addLanguageCommunication(languageCommunication);
        }
    }
    COCTMT150003UV03Organization providerOrganization = new COCTMT150003UV03Organization();
    patient.setProviderOrganization(providerOrganization);
    providerOrganization.setClassCode(EntityClassOrganization.ORG);
    providerOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
    providerOrganization.setId(orgIds);
    ON name = null;
    if (managingOrg != null && managingOrg.hasName()) {
        name = new ON();
        name.setMixed(Collections.singletonList(managingOrg.getName()));
        providerOrganization.setName(Collections.singletonList(name));
    }
    if (managingOrg != null) {
        COCTMT150003UV03ContactParty contactParty = new COCTMT150003UV03ContactParty();
        contactParty.setClassCode(RoleClassContact.CON);
        for (ContactPoint contactPoint : managingOrg.getTelecom()) {
            contactParty.addTelecom(transform(contactPoint));
        }
        if (managingOrg.hasAddress()) {
            contactParty.setAddr(new ArrayList<AD>());
            for (Address address : managingOrg.getAddress()) {
                contactParty.addAddr(transform(address));
            }
            if (managingOrg.hasContact()) {
                OrganizationContactComponent occ = managingOrg.getContactFirstRep();
                COCTMT150003UV03Person contactPerson = new COCTMT150003UV03Person();
                contactPerson.setClassCode(EntityClass.PSN);
                contactPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
                if (occ.hasName())
                    contactPerson.setName(Collections.singletonList(transform(occ.getName())));
                contactParty.setContactPerson(contactPerson);
            }
            providerOrganization.setContactParty(Collections.singletonList(contactParty));
        }
        MFMIMT700701UV01Custodian custodian = new MFMIMT700701UV01Custodian();
        registrationEvent.setCustodian(custodian);
        custodian.setTypeCode(ParticipationType.CST);
        COCTMT090003UV01AssignedEntity assignedEntity = new COCTMT090003UV01AssignedEntity();
        custodian.setAssignedEntity(assignedEntity);
        assignedEntity.setClassCode(RoleClassAssignedEntity.ASSIGNED);
        List<II> custIds = new ArrayList<II>();
        custIds.add(new II(getScheme(config.getCustodianOid()), null));
        assignedEntity.setId(custIds);
        // assignedEntity.setId(orgIds);
        COCTMT090003UV01Organization assignedOrganization = new COCTMT090003UV01Organization();
        assignedEntity.setAssignedOrganization(assignedOrganization);
        assignedOrganization.setClassCode(EntityClassOrganization.ORG);
        assignedOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
        if (managingOrg.hasName()) {
            assignedOrganization.setName(Collections.singletonList(name));
        }
    }
    ByteArrayOutputStream out = new ByteArrayOutputStream();
    HL7V3Transformer.marshallMessage(PRPAIN201301UV02Type.class, out, resultMsg);
    String outArray = new String(out.toByteArray());
    return outArray;
}

Example 3 with PatientCommunicationComponent

use of org.hl7.fhir.dstu3.model.Patient.PatientCommunicationComponent in project synthea by synthetichealth.

the class FhirR4 method basicInfo.

/**
 * Map the given Person to a FHIR Patient resource, and add it to the given Bundle.
 *
 * @param person   The Person
 * @param bundle   The Bundle to add to
 * @param stopTime Time the simulation ended
 * @return The created Entry
 */
@SuppressWarnings("rawtypes")
private static BundleEntryComponent basicInfo(Person person, Bundle bundle, long stopTime) {
    Patient patientResource = new Patient();
    patientResource.addIdentifier().setSystem(SYNTHEA_IDENTIFIER).setValue((String) person.attributes.get(Person.ID));
    if (USE_US_CORE_IG) {
        Meta meta = new Meta();
        meta.addProfile("http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient");
        patientResource.setMeta(meta);
    }
    Code mrnCode = new Code("http://terminology.hl7.org/CodeSystem/v2-0203", "MR", "Medical Record Number");
    patientResource.addIdentifier().setType(mapCodeToCodeableConcept(mrnCode, "http://terminology.hl7.org/CodeSystem/v2-0203")).setSystem("http://hospital.smarthealthit.org").setValue((String) person.attributes.get(Person.ID));
    Code ssnCode = new Code("http://terminology.hl7.org/CodeSystem/v2-0203", "SS", "Social Security Number");
    patientResource.addIdentifier().setType(mapCodeToCodeableConcept(ssnCode, "http://terminology.hl7.org/CodeSystem/v2-0203")).setSystem("http://hl7.org/fhir/sid/us-ssn").setValue((String) person.attributes.get(Person.IDENTIFIER_SSN));
    if (person.attributes.get(Person.IDENTIFIER_DRIVERS) != null) {
        Code driversCode = new Code("http://terminology.hl7.org/CodeSystem/v2-0203", "DL", "Driver's License");
        patientResource.addIdentifier().setType(mapCodeToCodeableConcept(driversCode, "http://terminology.hl7.org/CodeSystem/v2-0203")).setSystem("urn:oid:2.16.840.1.113883.4.3.25").setValue((String) person.attributes.get(Person.IDENTIFIER_DRIVERS));
    }
    if (person.attributes.get(Person.IDENTIFIER_PASSPORT) != null) {
        Code passportCode = new Code("http://terminology.hl7.org/CodeSystem/v2-0203", "PPN", "Passport Number");
        patientResource.addIdentifier().setType(mapCodeToCodeableConcept(passportCode, "http://terminology.hl7.org/CodeSystem/v2-0203")).setSystem(SHR_EXT + "passportNumber").setValue((String) person.attributes.get(Person.IDENTIFIER_PASSPORT));
    }
    if (person.attributes.get(Person.CONTACT_EMAIL) != null) {
        ContactComponent contact = new ContactComponent();
        HumanName contactName = new HumanName();
        contactName.setUse(HumanName.NameUse.OFFICIAL);
        contactName.addGiven((String) person.attributes.get(Person.CONTACT_GIVEN_NAME));
        contactName.setFamily((String) person.attributes.get(Person.CONTACT_FAMILY_NAME));
        contact.setName(contactName);
        contact.addTelecom().setSystem(ContactPointSystem.EMAIL).setUse(ContactPointUse.HOME).setValue((String) person.attributes.get(Person.CONTACT_EMAIL));
        patientResource.addContact(contact);
    }
    if (USE_US_CORE_IG) {
        // We do not yet account for mixed race
        Extension raceExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-race");
        String race = (String) person.attributes.get(Person.RACE);
        String raceDisplay;
        switch(race) {
            case "white":
                raceDisplay = "White";
                break;
            case "black":
                raceDisplay = "Black or African American";
                break;
            case "asian":
                raceDisplay = "Asian";
                break;
            case "native":
                raceDisplay = "American Indian or Alaska Native";
                break;
            case "hawaiian":
                raceDisplay = "Native Hawaiian or Other Pacific Islander";
                break;
            default:
                raceDisplay = "Other";
                break;
        }
        String raceNum = (String) raceEthnicityCodes.get(race);
        Extension raceCodingExtension = new Extension("ombCategory");
        Coding raceCoding = new Coding();
        if (raceDisplay.equals("Other")) {
            raceCoding.setSystem("http://terminology.hl7.org/CodeSystem/v3-NullFlavor");
            raceCoding.setCode("UNK");
            raceCoding.setDisplay("Unknown");
        } else {
            raceCoding.setSystem("urn:oid:2.16.840.1.113883.6.238");
            raceCoding.setCode(raceNum);
            raceCoding.setDisplay(raceDisplay);
        }
        raceCodingExtension.setValue(raceCoding);
        raceExtension.addExtension(raceCodingExtension);
        Extension raceTextExtension = new Extension("text");
        raceTextExtension.setValue(new StringType(raceDisplay));
        raceExtension.addExtension(raceTextExtension);
        patientResource.addExtension(raceExtension);
        // We do not yet account for mixed ethnicity
        Extension ethnicityExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity");
        String ethnicity = (String) person.attributes.get(Person.ETHNICITY);
        String ethnicityDisplay;
        if (ethnicity.equals("hispanic")) {
            ethnicity = "hispanic";
            ethnicityDisplay = "Hispanic or Latino";
        } else {
            ethnicity = "nonhispanic";
            ethnicityDisplay = "Not Hispanic or Latino";
        }
        String ethnicityNum = (String) raceEthnicityCodes.get(ethnicity);
        Extension ethnicityCodingExtension = new Extension("ombCategory");
        Coding ethnicityCoding = new Coding();
        ethnicityCoding.setSystem("urn:oid:2.16.840.1.113883.6.238");
        ethnicityCoding.setCode(ethnicityNum);
        ethnicityCoding.setDisplay(ethnicityDisplay);
        ethnicityCodingExtension.setValue(ethnicityCoding);
        ethnicityExtension.addExtension(ethnicityCodingExtension);
        Extension ethnicityTextExtension = new Extension("text");
        ethnicityTextExtension.setValue(new StringType(ethnicityDisplay));
        ethnicityExtension.addExtension(ethnicityTextExtension);
        patientResource.addExtension(ethnicityExtension);
    }
    String firstLanguage = (String) person.attributes.get(Person.FIRST_LANGUAGE);
    Map languageMap = (Map) languageLookup.get(firstLanguage);
    Code languageCode = new Code((String) languageMap.get("system"), (String) languageMap.get("code"), (String) languageMap.get("display"));
    List<PatientCommunicationComponent> communication = new ArrayList<PatientCommunicationComponent>();
    communication.add(new PatientCommunicationComponent(mapCodeToCodeableConcept(languageCode, (String) languageMap.get("system"))));
    patientResource.setCommunication(communication);
    HumanName name = patientResource.addName();
    name.setUse(HumanName.NameUse.OFFICIAL);
    name.addGiven((String) person.attributes.get(Person.FIRST_NAME));
    name.setFamily((String) person.attributes.get(Person.LAST_NAME));
    if (person.attributes.get(Person.NAME_PREFIX) != null) {
        name.addPrefix((String) person.attributes.get(Person.NAME_PREFIX));
    }
    if (person.attributes.get(Person.NAME_SUFFIX) != null) {
        name.addSuffix((String) person.attributes.get(Person.NAME_SUFFIX));
    }
    if (person.attributes.get(Person.MAIDEN_NAME) != null) {
        HumanName maidenName = patientResource.addName();
        maidenName.setUse(HumanName.NameUse.MAIDEN);
        maidenName.addGiven((String) person.attributes.get(Person.FIRST_NAME));
        maidenName.setFamily((String) person.attributes.get(Person.MAIDEN_NAME));
        if (person.attributes.get(Person.NAME_PREFIX) != null) {
            maidenName.addPrefix((String) person.attributes.get(Person.NAME_PREFIX));
        }
        if (person.attributes.get(Person.NAME_SUFFIX) != null) {
            maidenName.addSuffix((String) person.attributes.get(Person.NAME_SUFFIX));
        }
    }
    Extension mothersMaidenNameExtension = new Extension("http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName");
    String mothersMaidenName = (String) person.attributes.get(Person.NAME_MOTHER);
    mothersMaidenNameExtension.setValue(new StringType(mothersMaidenName));
    patientResource.addExtension(mothersMaidenNameExtension);
    long birthdate = (long) person.attributes.get(Person.BIRTHDATE);
    patientResource.setBirthDate(new Date(birthdate));
    Extension birthSexExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex");
    if (person.attributes.get(Person.GENDER).equals("M")) {
        patientResource.setGender(AdministrativeGender.MALE);
        birthSexExtension.setValue(new CodeType("M"));
    } else if (person.attributes.get(Person.GENDER).equals("F")) {
        patientResource.setGender(AdministrativeGender.FEMALE);
        birthSexExtension.setValue(new CodeType("F"));
    } else if (person.attributes.get(Person.GENDER).equals("UNK")) {
        patientResource.setGender(AdministrativeGender.UNKNOWN);
    }
    if (USE_US_CORE_IG) {
        patientResource.addExtension(birthSexExtension);
    }
    String state = (String) person.attributes.get(Person.STATE);
    if (USE_US_CORE_IG) {
        state = Location.getAbbreviation(state);
    }
    Address addrResource = patientResource.addAddress();
    addrResource.addLine((String) person.attributes.get(Person.ADDRESS)).setCity((String) person.attributes.get(Person.CITY)).setPostalCode((String) person.attributes.get(Person.ZIP)).setState(state);
    if (COUNTRY_CODE != null) {
        addrResource.setCountry(COUNTRY_CODE);
    }
    Address birthplace = new Address();
    birthplace.setCity((String) person.attributes.get(Person.BIRTH_CITY)).setState((String) person.attributes.get(Person.BIRTH_STATE)).setCountry((String) person.attributes.get(Person.BIRTH_COUNTRY));
    Extension birthplaceExtension = new Extension("http://hl7.org/fhir/StructureDefinition/patient-birthPlace");
    birthplaceExtension.setValue(birthplace);
    patientResource.addExtension(birthplaceExtension);
    if (person.attributes.get(Person.MULTIPLE_BIRTH_STATUS) != null) {
        patientResource.setMultipleBirth(new IntegerType((int) person.attributes.get(Person.MULTIPLE_BIRTH_STATUS)));
    } else {
        patientResource.setMultipleBirth(new BooleanType(false));
    }
    patientResource.addTelecom().setSystem(ContactPointSystem.PHONE).setUse(ContactPointUse.HOME).setValue((String) person.attributes.get(Person.TELECOM));
    String maritalStatus = ((String) person.attributes.get(Person.MARITAL_STATUS));
    if (maritalStatus != null) {
        Code maritalStatusCode = new Code("http://terminology.hl7.org/CodeSystem/v3-MaritalStatus", maritalStatus, maritalStatus);
        patientResource.setMaritalStatus(mapCodeToCodeableConcept(maritalStatusCode, "http://terminology.hl7.org/CodeSystem/v3-MaritalStatus"));
    } else {
        Code maritalStatusCode = new Code("http://terminology.hl7.org/CodeSystem/v3-MaritalStatus", "S", "Never Married");
        patientResource.setMaritalStatus(mapCodeToCodeableConcept(maritalStatusCode, "http://terminology.hl7.org/CodeSystem/v3-MaritalStatus"));
    }
    Point2D.Double coord = person.getLonLat();
    if (coord != null) {
        Extension geolocation = addrResource.addExtension();
        geolocation.setUrl("http://hl7.org/fhir/StructureDefinition/geolocation");
        geolocation.addExtension("latitude", new DecimalType(coord.getY()));
        geolocation.addExtension("longitude", new DecimalType(coord.getX()));
    }
    if (!person.alive(stopTime)) {
        patientResource.setDeceased(convertFhirDateTime((Long) person.attributes.get(Person.DEATHDATE), true));
    }
    String generatedBySynthea = "Generated by <a href=\"https://github.com/synthetichealth/synthea\">Synthea</a>." + "Version identifier: " + Utilities.SYNTHEA_VERSION + " . " + "  Person seed: " + person.getSeed() + "  Population seed: " + person.populationSeed;
    patientResource.setText(new Narrative().setStatus(NarrativeStatus.GENERATED).setDiv(new XhtmlNode(NodeType.Element).setValue(generatedBySynthea)));
    if (USE_SHR_EXTENSIONS) {
        patientResource.setMeta(new Meta().addProfile(SHR_EXT + "shr-entity-Patient"));
        // Patient profile requires race, ethnicity, birthsex,
        // MothersMaidenName, FathersName, Person-extension
        patientResource.addExtension().setUrl(SHR_EXT + "shr-actor-FictionalPerson-extension").setValue(new BooleanType(true));
        String fathersName = (String) person.attributes.get(Person.NAME_FATHER);
        Extension fathersNameExtension = new Extension(SHR_EXT + "shr-entity-FathersName-extension", new HumanName().setText(fathersName));
        patientResource.addExtension(fathersNameExtension);
        String ssn = (String) person.attributes.get(Person.IDENTIFIER_SSN);
        Extension ssnExtension = new Extension(SHR_EXT + "shr-demographics-SocialSecurityNumber-extension", new StringType(ssn));
        patientResource.addExtension(ssnExtension);
    }
    // DALY and QALY values
    // we only write the last(current) one to the patient record
    Double dalyValue = (Double) person.attributes.get("most-recent-daly");
    Double qalyValue = (Double) person.attributes.get("most-recent-qaly");
    if (dalyValue != null) {
        Extension dalyExtension = new Extension(SYNTHEA_EXT + "disability-adjusted-life-years");
        DecimalType daly = new DecimalType(dalyValue);
        dalyExtension.setValue(daly);
        patientResource.addExtension(dalyExtension);
        Extension qalyExtension = new Extension(SYNTHEA_EXT + "quality-adjusted-life-years");
        DecimalType qaly = new DecimalType(qalyValue);
        qalyExtension.setValue(qaly);
        patientResource.addExtension(qalyExtension);
    }
    return newEntry(bundle, patientResource, (String) person.attributes.get(Person.ID));
}

Example 4 with PatientCommunicationComponent

use of org.hl7.fhir.dstu3.model.Patient.PatientCommunicationComponent in project synthea by synthetichealth.

the class FhirStu3 method basicInfo.

/**
 * Map the given Person to a FHIR Patient resource, and add it to the given Bundle.
 *
 * @param person The Person
 * @param bundle The Bundle to add to
 * @param stopTime Time the simulation ended
 * @return The created Entry
 */
@SuppressWarnings("rawtypes")
private static BundleEntryComponent basicInfo(Person person, Bundle bundle, long stopTime) {
    Patient patientResource = new Patient();
    patientResource.addIdentifier().setSystem("https://github.com/synthetichealth/synthea").setValue((String) person.attributes.get(Person.ID));
    Code mrnCode = new Code("http://hl7.org/fhir/v2/0203", "MR", "Medical Record Number");
    patientResource.addIdentifier().setType(mapCodeToCodeableConcept(mrnCode, "http://hl7.org/fhir/v2/0203")).setSystem("http://hospital.smarthealthit.org").setValue((String) person.attributes.get(Person.ID));
    Code ssnCode = new Code("http://hl7.org/fhir/identifier-type", "SB", "Social Security Number");
    patientResource.addIdentifier().setType(mapCodeToCodeableConcept(ssnCode, "http://hl7.org/fhir/identifier-type")).setSystem("http://hl7.org/fhir/sid/us-ssn").setValue((String) person.attributes.get(Person.IDENTIFIER_SSN));
    if (person.attributes.get(Person.IDENTIFIER_DRIVERS) != null) {
        Code driversCode = new Code("http://hl7.org/fhir/v2/0203", "DL", "Driver's License");
        patientResource.addIdentifier().setType(mapCodeToCodeableConcept(driversCode, "http://hl7.org/fhir/v2/0203")).setSystem("urn:oid:2.16.840.1.113883.4.3.25").setValue((String) person.attributes.get(Person.IDENTIFIER_DRIVERS));
    }
    if (person.attributes.get(Person.IDENTIFIER_PASSPORT) != null) {
        Code passportCode = new Code("http://hl7.org/fhir/v2/0203", "PPN", "Passport Number");
        patientResource.addIdentifier().setType(mapCodeToCodeableConcept(passportCode, "http://hl7.org/fhir/v2/0203")).setSystem(SHR_EXT + "passportNumber").setValue((String) person.attributes.get(Person.IDENTIFIER_PASSPORT));
    }
    if (person.attributes.get(Person.CONTACT_EMAIL) != null) {
        ContactComponent contact = new ContactComponent();
        HumanName contactName = new HumanName();
        contactName.setUse(HumanName.NameUse.OFFICIAL);
        contactName.addGiven((String) person.attributes.get(Person.CONTACT_GIVEN_NAME));
        contactName.setFamily((String) person.attributes.get(Person.CONTACT_FAMILY_NAME));
        contact.setName(contactName);
        contact.addTelecom().setSystem(ContactPointSystem.EMAIL).setUse(ContactPointUse.HOME).setValue((String) person.attributes.get(Person.CONTACT_EMAIL));
        patientResource.addContact(contact);
    }
    // We do not yet account for mixed race
    Extension raceExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-race");
    String race = (String) person.attributes.get(Person.RACE);
    String raceDisplay;
    switch(race) {
        case "white":
            raceDisplay = "White";
            break;
        case "black":
            raceDisplay = "Black or African American";
            break;
        case "asian":
            raceDisplay = "Asian";
            break;
        case "native":
            raceDisplay = "American Indian or Alaska Native";
            break;
        case "hawaiian":
            raceDisplay = "Native Hawaiian or Other Pacific Islander";
            break;
        default:
            raceDisplay = "Other";
            break;
    }
    String raceNum = (String) raceEthnicityCodes.get(race);
    Extension raceCodingExtension = new Extension("ombCategory");
    Coding raceCoding = new Coding();
    if (raceDisplay.equals("Other")) {
        raceCoding.setSystem("http://hl7.org/fhir/v3/NullFlavor");
        raceCoding.setCode("UNK");
        raceCoding.setDisplay("Unknown");
    } else {
        raceCoding.setSystem("urn:oid:2.16.840.1.113883.6.238");
        raceCoding.setCode(raceNum);
        raceCoding.setDisplay(raceDisplay);
    }
    raceCodingExtension.setValue(raceCoding);
    raceExtension.addExtension(raceCodingExtension);
    Extension raceTextExtension = new Extension("text");
    raceTextExtension.setValue(new StringType(raceDisplay));
    raceExtension.addExtension(raceTextExtension);
    patientResource.addExtension(raceExtension);
    // We do not yet account for mixed ethnicity
    Extension ethnicityExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity");
    String ethnicity = (String) person.attributes.get(Person.ETHNICITY);
    String ethnicityDisplay;
    if (ethnicity.equals("hispanic")) {
        ethnicity = "hispanic";
        ethnicityDisplay = "Hispanic or Latino";
    } else {
        ethnicity = "nonhispanic";
        ethnicityDisplay = "Not Hispanic or Latino";
    }
    String ethnicityNum = (String) raceEthnicityCodes.get(ethnicity);
    Extension ethnicityCodingExtension = new Extension("ombCategory");
    Coding ethnicityCoding = new Coding();
    ethnicityCoding.setSystem("urn:oid:2.16.840.1.113883.6.238");
    ethnicityCoding.setCode(ethnicityNum);
    ethnicityCoding.setDisplay(ethnicityDisplay);
    ethnicityCodingExtension.setValue(ethnicityCoding);
    ethnicityExtension.addExtension(ethnicityCodingExtension);
    Extension ethnicityTextExtension = new Extension("text");
    ethnicityTextExtension.setValue(new StringType(ethnicityDisplay));
    ethnicityExtension.addExtension(ethnicityTextExtension);
    patientResource.addExtension(ethnicityExtension);
    String firstLanguage = (String) person.attributes.get(Person.FIRST_LANGUAGE);
    Map languageMap = (Map) languageLookup.get(firstLanguage);
    Code languageCode = new Code((String) languageMap.get("system"), (String) languageMap.get("code"), (String) languageMap.get("display"));
    List<PatientCommunicationComponent> communication = new ArrayList<PatientCommunicationComponent>();
    communication.add(new PatientCommunicationComponent(mapCodeToCodeableConcept(languageCode, (String) languageMap.get("system"))));
    patientResource.setCommunication(communication);
    HumanName name = patientResource.addName();
    name.setUse(HumanName.NameUse.OFFICIAL);
    name.addGiven((String) person.attributes.get(Person.FIRST_NAME));
    name.setFamily((String) person.attributes.get(Person.LAST_NAME));
    if (person.attributes.get(Person.NAME_PREFIX) != null) {
        name.addPrefix((String) person.attributes.get(Person.NAME_PREFIX));
    }
    if (person.attributes.get(Person.NAME_SUFFIX) != null) {
        name.addSuffix((String) person.attributes.get(Person.NAME_SUFFIX));
    }
    if (person.attributes.get(Person.MAIDEN_NAME) != null) {
        HumanName maidenName = patientResource.addName();
        maidenName.setUse(HumanName.NameUse.MAIDEN);
        maidenName.addGiven((String) person.attributes.get(Person.FIRST_NAME));
        maidenName.setFamily((String) person.attributes.get(Person.MAIDEN_NAME));
        if (person.attributes.get(Person.NAME_PREFIX) != null) {
            maidenName.addPrefix((String) person.attributes.get(Person.NAME_PREFIX));
        }
        if (person.attributes.get(Person.NAME_SUFFIX) != null) {
            maidenName.addSuffix((String) person.attributes.get(Person.NAME_SUFFIX));
        }
    }
    Extension mothersMaidenNameExtension = new Extension("http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName");
    String mothersMaidenName = (String) person.attributes.get(Person.NAME_MOTHER);
    mothersMaidenNameExtension.setValue(new StringType(mothersMaidenName));
    patientResource.addExtension(mothersMaidenNameExtension);
    long birthdate = (long) person.attributes.get(Person.BIRTHDATE);
    patientResource.setBirthDate(new Date(birthdate));
    Extension birthSexExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex");
    if (person.attributes.get(Person.GENDER).equals("M")) {
        patientResource.setGender(AdministrativeGender.MALE);
        birthSexExtension.setValue(new CodeType("M"));
    } else if (person.attributes.get(Person.GENDER).equals("F")) {
        patientResource.setGender(AdministrativeGender.FEMALE);
        birthSexExtension.setValue(new CodeType("F"));
    }
    patientResource.addExtension(birthSexExtension);
    String state = (String) person.attributes.get(Person.STATE);
    Address addrResource = patientResource.addAddress();
    addrResource.addLine((String) person.attributes.get(Person.ADDRESS)).setCity((String) person.attributes.get(Person.CITY)).setPostalCode((String) person.attributes.get(Person.ZIP)).setState(state);
    if (COUNTRY_CODE != null) {
        addrResource.setCountry(COUNTRY_CODE);
    }
    Address birthplace = new Address();
    birthplace.setCity((String) person.attributes.get(Person.BIRTH_CITY)).setState((String) person.attributes.get(Person.BIRTH_STATE)).setCountry((String) person.attributes.get(Person.BIRTH_COUNTRY));
    Extension birthplaceExtension = new Extension("http://hl7.org/fhir/StructureDefinition/birthPlace");
    birthplaceExtension.setValue(birthplace);
    patientResource.addExtension(birthplaceExtension);
    if (person.attributes.get(Person.MULTIPLE_BIRTH_STATUS) != null) {
        patientResource.setMultipleBirth(new IntegerType((int) person.attributes.get(Person.MULTIPLE_BIRTH_STATUS)));
    } else {
        patientResource.setMultipleBirth(new BooleanType(false));
    }
    patientResource.addTelecom().setSystem(ContactPoint.ContactPointSystem.PHONE).setUse(ContactPoint.ContactPointUse.HOME).setValue((String) person.attributes.get(Person.TELECOM));
    String maritalStatus = ((String) person.attributes.get(Person.MARITAL_STATUS));
    if (maritalStatus != null) {
        Code maritalStatusCode = new Code("http://hl7.org/fhir/v3/MaritalStatus", maritalStatus, maritalStatus);
        patientResource.setMaritalStatus(mapCodeToCodeableConcept(maritalStatusCode, "http://hl7.org/fhir/v3/MaritalStatus"));
    } else {
        Code maritalStatusCode = new Code("http://hl7.org/fhir/v3/MaritalStatus", "S", "Never Married");
        patientResource.setMaritalStatus(mapCodeToCodeableConcept(maritalStatusCode, "http://hl7.org/fhir/v3/MaritalStatus"));
    }
    Point2D.Double coord = person.getLonLat();
    if (coord != null) {
        Extension geolocation = addrResource.addExtension();
        geolocation.setUrl("http://hl7.org/fhir/StructureDefinition/geolocation");
        geolocation.addExtension("latitude", new DecimalType(coord.getY()));
        geolocation.addExtension("longitude", new DecimalType(coord.getX()));
    }
    if (!person.alive(stopTime)) {
        patientResource.setDeceased(convertFhirDateTime((Long) person.attributes.get(Person.DEATHDATE), true));
    }
    String generatedBySynthea = "Generated by <a href=\"https://github.com/synthetichealth/synthea\">Synthea</a>." + "Version identifier: " + Utilities.SYNTHEA_VERSION + " . " + "  Person seed: " + person.getSeed() + "  Population seed: " + person.populationSeed;
    patientResource.setText(new Narrative().setStatus(NarrativeStatus.GENERATED).setDiv(new XhtmlNode(NodeType.Element).setValue(generatedBySynthea)));
    if (USE_SHR_EXTENSIONS) {
        patientResource.setMeta(new Meta().addProfile(SHR_EXT + "shr-entity-Patient"));
        // Patient profile requires race, ethnicity, birthsex,
        // MothersMaidenName, FathersName, Person-extension
        patientResource.addExtension().setUrl(SHR_EXT + "shr-actor-FictionalPerson-extension").setValue(new BooleanType(true));
        String fathersName = (String) person.attributes.get(Person.NAME_FATHER);
        Extension fathersNameExtension = new Extension(SHR_EXT + "shr-entity-FathersName-extension", new HumanName().setText(fathersName));
        patientResource.addExtension(fathersNameExtension);
        String ssn = (String) person.attributes.get(Person.IDENTIFIER_SSN);
        Extension ssnExtension = new Extension(SHR_EXT + "shr-demographics-SocialSecurityNumber-extension", new StringType(ssn));
        patientResource.addExtension(ssnExtension);
        Basic personResource = new Basic();
        // the only required field on this patient resource is code
        Coding fixedCode = new Coding("http://standardhealthrecord.org/fhir/basic-resource-type", "shr-entity-Person", "shr-entity-Person");
        personResource.setCode(new CodeableConcept().addCoding(fixedCode));
        Meta personMeta = new Meta();
        personMeta.addProfile(SHR_EXT + "shr-entity-Person");
        personResource.setMeta(personMeta);
        BundleEntryComponent personEntry = newEntry(person, bundle, personResource);
        patientResource.addExtension().setUrl(SHR_EXT + "shr-entity-Person-extension").setValue(new Reference(personEntry.getFullUrl()));
    }
    // DALY and QALY values
    // we only write the last(current) one to the patient record
    Double dalyValue = (Double) person.attributes.get("most-recent-daly");
    Double qalyValue = (Double) person.attributes.get("most-recent-qaly");
    if (dalyValue != null) {
        Extension dalyExtension = new Extension(SYNTHEA_EXT + "disability-adjusted-life-years");
        DecimalType daly = new DecimalType(dalyValue);
        dalyExtension.setValue(daly);
        patientResource.addExtension(dalyExtension);
        Extension qalyExtension = new Extension(SYNTHEA_EXT + "quality-adjusted-life-years");
        DecimalType qaly = new DecimalType(qalyValue);
        qalyExtension.setValue(qaly);
        patientResource.addExtension(qalyExtension);
    }
    return newEntry(bundle, patientResource, (String) person.attributes.get(Person.ID));
}

Example 5 with PatientCommunicationComponent

use of org.hl7.fhir.dstu3.model.Patient.PatientCommunicationComponent in project MobileAccessGateway by i4mi.

the class Iti104UpdateRequestConverter method doUpdate.

public String doUpdate(Patient in, Identifier identifier) throws JAXBException {
    PRPAIN201302UV02Type resultMsg = new PRPAIN201302UV02Type();
    resultMsg.setITSVersion("XML_1.0");
    // String UUID.randomUUID().toString();
    resultMsg.setId(new II(config.getPixQueryOid(), uniqueId()));
    // Now
    resultMsg.setCreationTime(new TS(Timestamp.now().toHL7()));
    resultMsg.setProcessingCode(new CS("T", null, null));
    resultMsg.setProcessingModeCode(new CS("T", null, null));
    resultMsg.setInteractionId(new II("2.16.840.1.113883.1.18", "PRPA_IN201302UV02"));
    resultMsg.setAcceptAckCode(new CS("AL", null, null));
    MCCIMT000100UV01Receiver receiver = new MCCIMT000100UV01Receiver();
    resultMsg.addReceiver(receiver);
    receiver.setTypeCode(CommunicationFunctionType.RCV);
    MCCIMT000100UV01Device receiverDevice = new MCCIMT000100UV01Device();
    receiver.setDevice(receiverDevice);
    receiverDevice.setClassCode(EntityClassDevice.DEV);
    receiverDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    receiverDevice.setId(Collections.singletonList(new II(config.getPixReceiverOid(), null)));
    MCCIMT000100UV01Sender sender = new MCCIMT000100UV01Sender();
    resultMsg.setSender(sender);
    sender.setTypeCode(CommunicationFunctionType.SND);
    MCCIMT000100UV01Device senderDevice = new MCCIMT000100UV01Device();
    sender.setDevice(senderDevice);
    senderDevice.setClassCode(EntityClassDevice.DEV);
    senderDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    senderDevice.setId(Collections.singletonList(new II(config.getPixMySenderOid(), null)));
    PRPAIN201302UV02MFMIMT700701UV01ControlActProcess controlActProcess = new PRPAIN201302UV02MFMIMT700701UV01ControlActProcess();
    resultMsg.setControlActProcess(controlActProcess);
    controlActProcess.setClassCode(ActClassControlAct.CACT);
    controlActProcess.setMoodCode(XActMoodIntentEvent.EVN);
    controlActProcess.setCode(new CD("PRPA_TE201302UV02", "2.16.840.1.113883.1.18", null));
    PRPAIN201302UV02MFMIMT700701UV01Subject1 subject = new PRPAIN201302UV02MFMIMT700701UV01Subject1();
    controlActProcess.addSubject(subject);
    subject.setTypeCode("SUBJ");
    // ???
    subject.setContextConductionInd(false);
    PRPAIN201302UV02MFMIMT700701UV01RegistrationEvent registrationEvent = new PRPAIN201302UV02MFMIMT700701UV01RegistrationEvent();
    subject.setRegistrationEvent(registrationEvent);
    registrationEvent.setClassCode(ActClass.REG);
    registrationEvent.setMoodCode(ActMood.EVN);
    // ???
    registrationEvent.setStatusCode(new CS("active", null, null));
    PRPAIN201302UV02MFMIMT700701UV01Subject2 subject1 = new PRPAIN201302UV02MFMIMT700701UV01Subject2();
    registrationEvent.setSubject1(subject1);
    subject1.setTypeCode(ParticipationTargetSubject.SBJ);
    PRPAMT201302UV02Patient patient = new PRPAMT201302UV02Patient();
    subject1.setPatient(patient);
    patient.setClassCode("PAT");
    PRPAMT201302UV02PatientStatusCode statusCode = new PRPAMT201302UV02PatientStatusCode();
    statusCode.setCode("active");
    // ???
    patient.setStatusCode(statusCode);
    PRPAMT201302UV02PatientPatientPerson patientPerson = new PRPAMT201302UV02PatientPatientPerson();
    patient.setPatientPerson(patientPerson);
    patientPerson.setClassCode(EntityClass.PSN);
    patientPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
    patientPerson.setAsOtherIDs(new ArrayList());
    List<II> orgIds = new ArrayList<II>();
    Set<String> mainIds = new HashSet<String>();
    Organization managingOrg = getManagingOrganization(in);
    // NULL POINTER CHECK
    if (managingOrg != null) {
        for (Identifier id : managingOrg.getIdentifier()) {
            orgIds.add(new II(getScheme(id.getSystem()), null));
            mainIds.add(id.getSystem());
        }
    } else {
        Reference org = in.getManagingOrganization();
        if (org != null && org.getIdentifier() != null) {
            orgIds.add(new II(getScheme(org.getIdentifier().getSystem()), null));
            mainIds.add(org.getIdentifier().getSystem());
        }
    }
    // TODO How is the correct mapping done?
    for (Identifier id : in.getIdentifier()) {
        boolean isOwn = mainIds.contains(id.getSystem());
        if (isOwn)
            patient.addId(patientIdentifierUpd(id));
        else {
            PRPAMT201302UV02OtherIDs asOtherIDs = new PRPAMT201302UV02OtherIDs();
            PRPAMT201302UV02OtherIDsId id2 = new PRPAMT201302UV02OtherIDsId();
            id2.setRoot(getScheme(id.getSystem()));
            id2.setExtension(id.getValue());
            asOtherIDs.setClassCode("PAT");
            asOtherIDs.setId(Collections.singletonList(id2));
            COCTMT150002UV01Organization scopingOrganization = new COCTMT150002UV01Organization();
            scopingOrganization.setClassCode(EntityClassOrganization.ORG);
            scopingOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
            List<II> scopeOrgIds = new ArrayList<II>();
            scopeOrgIds.add(new II(getScheme(id.getSystem()), null));
            scopingOrganization.setId(scopeOrgIds);
            asOtherIDs.setScopingOrganization(scopingOrganization);
            patientPerson.addAsOtherIDs(asOtherIDs);
        }
    }
    for (HumanName name : in.getName()) {
        patientPerson.addName(transform(name));
    }
    patientPerson.setBirthTime(transform(in.getBirthDateElement()));
    if (in.hasGender()) {
        switch(in.getGender()) {
            case MALE:
                patientPerson.setAdministrativeGenderCode(new CE("M", "Male", "2.16.840.1.113883.12.1"));
                break;
            case FEMALE:
                patientPerson.setAdministrativeGenderCode(new CE("F", "Female", "2.16.840.1.113883.12.1"));
                break;
            case OTHER:
                patientPerson.setAdministrativeGenderCode(new CE("A", "Ambiguous", "2.16.840.1.113883.12.1"));
                break;
            case UNKNOWN:
                patientPerson.setAdministrativeGenderCode(new CE("U", "Unknown", "2.16.840.1.113883.12.1"));
                break;
        }
    }
    if (in.hasAddress())
        patientPerson.setAddr(new ArrayList<AD>());
    for (Address address : in.getAddress()) {
        patientPerson.addAddr(transform(address));
    }
    for (ContactPoint contactPoint : in.getTelecom()) {
        patientPerson.addTelecom(transform(contactPoint));
    }
    if (in.hasDeceasedBooleanType()) {
        patientPerson.setDeceasedInd(new BL(in.getDeceasedBooleanType().getValue()));
    }
    if (in.hasDeceasedDateTimeType()) {
        patientPerson.setDeceasedTime(transform(in.getDeceasedDateTimeType()));
    }
    if (in.hasMultipleBirthBooleanType()) {
        patientPerson.setMultipleBirthInd(new BL(in.getMultipleBirthBooleanType().getValue()));
    }
    if (in.hasMultipleBirthIntegerType()) {
        patientPerson.setMultipleBirthOrderNumber(new INT(in.getMultipleBirthIntegerType().getValue()));
    }
    if (in.hasMaritalStatus()) {
        patientPerson.setMaritalStatusCode(transform(in.getMaritalStatus()));
    }
    if (in.hasCommunication()) {
        for (PatientCommunicationComponent pcc : in.getCommunication()) {
            PRPAMT201302UV02LanguageCommunication languageCommunication = new PRPAMT201302UV02LanguageCommunication();
            languageCommunication.setLanguageCode(transform(pcc.getLanguage()));
            if (pcc.hasPreferred())
                languageCommunication.setPreferenceInd(new BL(pcc.getPreferred()));
            patientPerson.addLanguageCommunication(languageCommunication);
        }
    }
    COCTMT150003UV03Organization providerOrganization = new COCTMT150003UV03Organization();
    patient.setProviderOrganization(providerOrganization);
    providerOrganization.setClassCode(EntityClassOrganization.ORG);
    providerOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
    providerOrganization.setId(orgIds);
    ON name = null;
    if (managingOrg.hasName()) {
        name = new ON();
        name.setMixed(Collections.singletonList(managingOrg.getName()));
        providerOrganization.setName(Collections.singletonList(name));
    }
    COCTMT150003UV03ContactParty contactParty = new COCTMT150003UV03ContactParty();
    contactParty.setClassCode(RoleClassContact.CON);
    for (ContactPoint contactPoint : managingOrg.getTelecom()) {
        contactParty.addTelecom(transform(contactPoint));
    }
    if (managingOrg.hasAddress())
        contactParty.setAddr(new ArrayList<AD>());
    for (Address address : managingOrg.getAddress()) {
        contactParty.addAddr(transform(address));
    }
    if (managingOrg.hasContact()) {
        OrganizationContactComponent occ = managingOrg.getContactFirstRep();
        COCTMT150003UV03Person contactPerson = new COCTMT150003UV03Person();
        contactPerson.setClassCode(EntityClass.PSN);
        contactPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
        if (occ.hasName())
            contactPerson.setName(Collections.singletonList(transform(occ.getName())));
        contactParty.setContactPerson(contactPerson);
    }
    providerOrganization.setContactParty(Collections.singletonList(contactParty));
    MFMIMT700701UV01Custodian custodian = new MFMIMT700701UV01Custodian();
    registrationEvent.setCustodian(custodian);
    custodian.setTypeCode(ParticipationType.CST);
    COCTMT090003UV01AssignedEntity assignedEntity = new COCTMT090003UV01AssignedEntity();
    custodian.setAssignedEntity(assignedEntity);
    assignedEntity.setClassCode(RoleClassAssignedEntity.ASSIGNED);
    List<II> custIds = new ArrayList<II>();
    custIds.add(new II(getScheme(config.getCustodianOid()), null));
    assignedEntity.setId(custIds);
    // assignedEntity.setId(orgIds);
    COCTMT090003UV01Organization assignedOrganization = new COCTMT090003UV01Organization();
    assignedEntity.setAssignedOrganization(assignedOrganization);
    assignedOrganization.setClassCode(EntityClassOrganization.ORG);
    assignedOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
    if (managingOrg.hasName()) {
        assignedOrganization.setName(Collections.singletonList(name));
    }
    ByteArrayOutputStream out = new ByteArrayOutputStream();
    HL7V3Transformer.marshallMessage(PRPAIN201302UV02Type.class, out, resultMsg);
    String outArray = new String(out.toByteArray());
    return outArray;
}