Examples with ContactComponent org.hl7.fhir.r4.model.Patient.ContactComponent used on opensource projects

Example 1 with ContactComponent

use of org.hl7.fhir.r4.model.Patient.ContactComponent in project gpconnect-demonstrator by nhsconnect.

the class PatientResourceProvider method createContact.

// patientDetailsToMinimalPatient
/**
 * add a set of contact details into the patient record NB these are
 * Contacts (related people etc) not contactpoints (telecoms)
 *
 * @param patient fhirResource object
 */
private void createContact(Patient patient) {
    // relationships
    Patient.ContactComponent contact = new ContactComponent();
    for (String relationship : new String[] { "Emergency contact", "Next of kin", "Daughter" }) {
        CodeableConcept crelationship = new CodeableConcept();
        crelationship.setText(relationship);
        contact.addRelationship(crelationship);
    }
    // contact address
    Address address = new Address();
    address.addLine("Trevelyan Square");
    address.addLine("Boar Ln");
    address.setPostalCode("LS1 6AE");
    address.setType(AddressType.PHYSICAL);
    address.setUse(AddressUse.HOME);
    contact.setAddress(address);
    // gender
    contact.setGender(AdministrativeGender.FEMALE);
    // telecom
    ContactPoint telecom = new ContactPoint();
    telecom.setSystem(ContactPointSystem.PHONE);
    telecom.setUse(ContactPointUse.MOBILE);
    telecom.setValue("07777123123");
    contact.addTelecom(telecom);
    // Name
    HumanName name = new HumanName();
    name.addGiven("Jane");
    name.setFamily("Jackson");
    List<StringType> prefixList = new ArrayList<>();
    prefixList.add(new StringType("Miss"));
    name.setPrefix(prefixList);
    name.setText("JACKSON Jane (Miss)");
    name.setUse(NameUse.OFFICIAL);
    contact.setName(name);
    patient.addContact(contact);
}

Example 2 with ContactComponent

use of org.hl7.fhir.r4.model.Patient.ContactComponent in project BridgeServer2 by Sage-Bionetworks.

the class CRCController method createPatient.

Patient createPatient(Account account) {
    Patient patient = new Patient();
    patient.setActive(true);
    patient.setId(account.getId());
    Identifier identifier = new Identifier();
    identifier.setValue(account.getId());
    identifier.setSystem(USER_ID_VALUE_NS);
    patient.addIdentifier(identifier);
    Coding coding = new Coding();
    coding.setSystem("source");
    coding.setCode("sage");
    Meta meta = new Meta();
    meta.setTag(ImmutableList.of(coding));
    patient.setMeta(meta);
    HumanName name = new HumanName();
    if (isNotBlank(account.getFirstName())) {
        name.addGiven(account.getFirstName());
    }
    if (isNotBlank(account.getLastName())) {
        name.setFamily(account.getLastName());
    }
    patient.addName(name);
    Map<String, String> atts = account.getAttributes();
    if (isNotBlank(atts.get("gender"))) {
        if ("female".equalsIgnoreCase(atts.get("gender"))) {
            patient.setGender(AdministrativeGender.FEMALE);
        } else if ("male".equalsIgnoreCase(atts.get("gender"))) {
            patient.setGender(AdministrativeGender.MALE);
        } else {
            patient.setGender(AdministrativeGender.OTHER);
        }
    } else {
        patient.setGender(AdministrativeGender.UNKNOWN);
    }
    if (isNotBlank(atts.get("dob"))) {
        LocalDate localDate = LocalDate.parse(atts.get("dob"));
        patient.setBirthDate(localDate.toDate());
    }
    Address address = new Address();
    if (isNotBlank(atts.get("address1"))) {
        address.addLine(atts.get("address1"));
    }
    if (isNotBlank(atts.get("address2"))) {
        address.addLine(atts.get("address2"));
    }
    if (isNotBlank(atts.get("city"))) {
        address.setCity(atts.get("city"));
    }
    if (isNotBlank(atts.get("state"))) {
        address.setState(atts.get("state"));
    } else {
        address.setState("NY");
    }
    if (isNotBlank(atts.get("zip_code"))) {
        address.setPostalCode(atts.get("zip_code"));
    }
    patient.addAddress(address);
    if (isNotBlank(atts.get("home_phone"))) {
        ContactPoint contact = new ContactPoint();
        contact.setSystem(ContactPointSystem.PHONE);
        contact.setValue(atts.get("home_phone"));
        patient.addTelecom(contact);
    }
    if (account.getPhone() != null && TRUE.equals(account.getPhoneVerified())) {
        ContactPoint contact = new ContactPoint();
        contact.setSystem(ContactPointSystem.SMS);
        contact.setValue(account.getPhone().getNumber());
        patient.addTelecom(contact);
    }
    if (account.getEmail() != null && TRUE.equals(account.getEmailVerified())) {
        ContactPoint contact = new ContactPoint();
        contact.setSystem(ContactPointSystem.EMAIL);
        contact.setValue(account.getEmail());
        patient.addTelecom(contact);
    }
    Reference ref = new Reference("CUZUCK");
    ref.setDisplay("COVID Recovery Corps");
    ContactComponent contact = new ContactComponent();
    contact.setOrganization(ref);
    patient.addContact(contact);
    return patient;
}

Example 3 with ContactComponent

use of org.hl7.fhir.r4.model.Patient.ContactComponent in project synthea by synthetichealth.

the class FhirR4 method basicInfo.

/**
 * Map the given Person to a FHIR Patient resource, and add it to the given Bundle.
 *
 * @param person   The Person
 * @param bundle   The Bundle to add to
 * @param stopTime Time the simulation ended
 * @return The created Entry
 */
@SuppressWarnings("rawtypes")
private static BundleEntryComponent basicInfo(Person person, Bundle bundle, long stopTime) {
    Patient patientResource = new Patient();
    patientResource.addIdentifier().setSystem(SYNTHEA_IDENTIFIER).setValue((String) person.attributes.get(Person.ID));
    if (USE_US_CORE_IG) {
        Meta meta = new Meta();
        meta.addProfile("http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient");
        patientResource.setMeta(meta);
    }
    Code mrnCode = new Code("http://terminology.hl7.org/CodeSystem/v2-0203", "MR", "Medical Record Number");
    patientResource.addIdentifier().setType(mapCodeToCodeableConcept(mrnCode, "http://terminology.hl7.org/CodeSystem/v2-0203")).setSystem("http://hospital.smarthealthit.org").setValue((String) person.attributes.get(Person.ID));
    Code ssnCode = new Code("http://terminology.hl7.org/CodeSystem/v2-0203", "SS", "Social Security Number");
    patientResource.addIdentifier().setType(mapCodeToCodeableConcept(ssnCode, "http://terminology.hl7.org/CodeSystem/v2-0203")).setSystem("http://hl7.org/fhir/sid/us-ssn").setValue((String) person.attributes.get(Person.IDENTIFIER_SSN));
    if (person.attributes.get(Person.IDENTIFIER_DRIVERS) != null) {
        Code driversCode = new Code("http://terminology.hl7.org/CodeSystem/v2-0203", "DL", "Driver's License");
        patientResource.addIdentifier().setType(mapCodeToCodeableConcept(driversCode, "http://terminology.hl7.org/CodeSystem/v2-0203")).setSystem("urn:oid:2.16.840.1.113883.4.3.25").setValue((String) person.attributes.get(Person.IDENTIFIER_DRIVERS));
    }
    if (person.attributes.get(Person.IDENTIFIER_PASSPORT) != null) {
        Code passportCode = new Code("http://terminology.hl7.org/CodeSystem/v2-0203", "PPN", "Passport Number");
        patientResource.addIdentifier().setType(mapCodeToCodeableConcept(passportCode, "http://terminology.hl7.org/CodeSystem/v2-0203")).setSystem(SHR_EXT + "passportNumber").setValue((String) person.attributes.get(Person.IDENTIFIER_PASSPORT));
    }
    if (person.attributes.get(Person.CONTACT_EMAIL) != null) {
        ContactComponent contact = new ContactComponent();
        HumanName contactName = new HumanName();
        contactName.setUse(HumanName.NameUse.OFFICIAL);
        contactName.addGiven((String) person.attributes.get(Person.CONTACT_GIVEN_NAME));
        contactName.setFamily((String) person.attributes.get(Person.CONTACT_FAMILY_NAME));
        contact.setName(contactName);
        contact.addTelecom().setSystem(ContactPointSystem.EMAIL).setUse(ContactPointUse.HOME).setValue((String) person.attributes.get(Person.CONTACT_EMAIL));
        patientResource.addContact(contact);
    }
    if (USE_US_CORE_IG) {
        // We do not yet account for mixed race
        Extension raceExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-race");
        String race = (String) person.attributes.get(Person.RACE);
        String raceDisplay;
        switch(race) {
            case "white":
                raceDisplay = "White";
                break;
            case "black":
                raceDisplay = "Black or African American";
                break;
            case "asian":
                raceDisplay = "Asian";
                break;
            case "native":
                raceDisplay = "American Indian or Alaska Native";
                break;
            case "hawaiian":
                raceDisplay = "Native Hawaiian or Other Pacific Islander";
                break;
            default:
                raceDisplay = "Other";
                break;
        }
        String raceNum = (String) raceEthnicityCodes.get(race);
        Extension raceCodingExtension = new Extension("ombCategory");
        Coding raceCoding = new Coding();
        if (raceDisplay.equals("Other")) {
            raceCoding.setSystem("http://terminology.hl7.org/CodeSystem/v3-NullFlavor");
            raceCoding.setCode("UNK");
            raceCoding.setDisplay("Unknown");
        } else {
            raceCoding.setSystem("urn:oid:2.16.840.1.113883.6.238");
            raceCoding.setCode(raceNum);
            raceCoding.setDisplay(raceDisplay);
        }
        raceCodingExtension.setValue(raceCoding);
        raceExtension.addExtension(raceCodingExtension);
        Extension raceTextExtension = new Extension("text");
        raceTextExtension.setValue(new StringType(raceDisplay));
        raceExtension.addExtension(raceTextExtension);
        patientResource.addExtension(raceExtension);
        // We do not yet account for mixed ethnicity
        Extension ethnicityExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity");
        String ethnicity = (String) person.attributes.get(Person.ETHNICITY);
        String ethnicityDisplay;
        if (ethnicity.equals("hispanic")) {
            ethnicity = "hispanic";
            ethnicityDisplay = "Hispanic or Latino";
        } else {
            ethnicity = "nonhispanic";
            ethnicityDisplay = "Not Hispanic or Latino";
        }
        String ethnicityNum = (String) raceEthnicityCodes.get(ethnicity);
        Extension ethnicityCodingExtension = new Extension("ombCategory");
        Coding ethnicityCoding = new Coding();
        ethnicityCoding.setSystem("urn:oid:2.16.840.1.113883.6.238");
        ethnicityCoding.setCode(ethnicityNum);
        ethnicityCoding.setDisplay(ethnicityDisplay);
        ethnicityCodingExtension.setValue(ethnicityCoding);
        ethnicityExtension.addExtension(ethnicityCodingExtension);
        Extension ethnicityTextExtension = new Extension("text");
        ethnicityTextExtension.setValue(new StringType(ethnicityDisplay));
        ethnicityExtension.addExtension(ethnicityTextExtension);
        patientResource.addExtension(ethnicityExtension);
    }
    String firstLanguage = (String) person.attributes.get(Person.FIRST_LANGUAGE);
    Map languageMap = (Map) languageLookup.get(firstLanguage);
    Code languageCode = new Code((String) languageMap.get("system"), (String) languageMap.get("code"), (String) languageMap.get("display"));
    List<PatientCommunicationComponent> communication = new ArrayList<PatientCommunicationComponent>();
    communication.add(new PatientCommunicationComponent(mapCodeToCodeableConcept(languageCode, (String) languageMap.get("system"))));
    patientResource.setCommunication(communication);
    HumanName name = patientResource.addName();
    name.setUse(HumanName.NameUse.OFFICIAL);
    name.addGiven((String) person.attributes.get(Person.FIRST_NAME));
    name.setFamily((String) person.attributes.get(Person.LAST_NAME));
    if (person.attributes.get(Person.NAME_PREFIX) != null) {
        name.addPrefix((String) person.attributes.get(Person.NAME_PREFIX));
    }
    if (person.attributes.get(Person.NAME_SUFFIX) != null) {
        name.addSuffix((String) person.attributes.get(Person.NAME_SUFFIX));
    }
    if (person.attributes.get(Person.MAIDEN_NAME) != null) {
        HumanName maidenName = patientResource.addName();
        maidenName.setUse(HumanName.NameUse.MAIDEN);
        maidenName.addGiven((String) person.attributes.get(Person.FIRST_NAME));
        maidenName.setFamily((String) person.attributes.get(Person.MAIDEN_NAME));
        if (person.attributes.get(Person.NAME_PREFIX) != null) {
            maidenName.addPrefix((String) person.attributes.get(Person.NAME_PREFIX));
        }
        if (person.attributes.get(Person.NAME_SUFFIX) != null) {
            maidenName.addSuffix((String) person.attributes.get(Person.NAME_SUFFIX));
        }
    }
    Extension mothersMaidenNameExtension = new Extension("http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName");
    String mothersMaidenName = (String) person.attributes.get(Person.NAME_MOTHER);
    mothersMaidenNameExtension.setValue(new StringType(mothersMaidenName));
    patientResource.addExtension(mothersMaidenNameExtension);
    long birthdate = (long) person.attributes.get(Person.BIRTHDATE);
    patientResource.setBirthDate(new Date(birthdate));
    Extension birthSexExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex");
    if (person.attributes.get(Person.GENDER).equals("M")) {
        patientResource.setGender(AdministrativeGender.MALE);
        birthSexExtension.setValue(new CodeType("M"));
    } else if (person.attributes.get(Person.GENDER).equals("F")) {
        patientResource.setGender(AdministrativeGender.FEMALE);
        birthSexExtension.setValue(new CodeType("F"));
    } else if (person.attributes.get(Person.GENDER).equals("UNK")) {
        patientResource.setGender(AdministrativeGender.UNKNOWN);
    }
    if (USE_US_CORE_IG) {
        patientResource.addExtension(birthSexExtension);
    }
    String state = (String) person.attributes.get(Person.STATE);
    if (USE_US_CORE_IG) {
        state = Location.getAbbreviation(state);
    }
    Address addrResource = patientResource.addAddress();
    addrResource.addLine((String) person.attributes.get(Person.ADDRESS)).setCity((String) person.attributes.get(Person.CITY)).setPostalCode((String) person.attributes.get(Person.ZIP)).setState(state);
    if (COUNTRY_CODE != null) {
        addrResource.setCountry(COUNTRY_CODE);
    }
    Address birthplace = new Address();
    birthplace.setCity((String) person.attributes.get(Person.BIRTH_CITY)).setState((String) person.attributes.get(Person.BIRTH_STATE)).setCountry((String) person.attributes.get(Person.BIRTH_COUNTRY));
    Extension birthplaceExtension = new Extension("http://hl7.org/fhir/StructureDefinition/patient-birthPlace");
    birthplaceExtension.setValue(birthplace);
    patientResource.addExtension(birthplaceExtension);
    if (person.attributes.get(Person.MULTIPLE_BIRTH_STATUS) != null) {
        patientResource.setMultipleBirth(new IntegerType((int) person.attributes.get(Person.MULTIPLE_BIRTH_STATUS)));
    } else {
        patientResource.setMultipleBirth(new BooleanType(false));
    }
    patientResource.addTelecom().setSystem(ContactPointSystem.PHONE).setUse(ContactPointUse.HOME).setValue((String) person.attributes.get(Person.TELECOM));
    String maritalStatus = ((String) person.attributes.get(Person.MARITAL_STATUS));
    if (maritalStatus != null) {
        Code maritalStatusCode = new Code("http://terminology.hl7.org/CodeSystem/v3-MaritalStatus", maritalStatus, maritalStatus);
        patientResource.setMaritalStatus(mapCodeToCodeableConcept(maritalStatusCode, "http://terminology.hl7.org/CodeSystem/v3-MaritalStatus"));
    } else {
        Code maritalStatusCode = new Code("http://terminology.hl7.org/CodeSystem/v3-MaritalStatus", "S", "Never Married");
        patientResource.setMaritalStatus(mapCodeToCodeableConcept(maritalStatusCode, "http://terminology.hl7.org/CodeSystem/v3-MaritalStatus"));
    }
    Point2D.Double coord = person.getLonLat();
    if (coord != null) {
        Extension geolocation = addrResource.addExtension();
        geolocation.setUrl("http://hl7.org/fhir/StructureDefinition/geolocation");
        geolocation.addExtension("latitude", new DecimalType(coord.getY()));
        geolocation.addExtension("longitude", new DecimalType(coord.getX()));
    }
    if (!person.alive(stopTime)) {
        patientResource.setDeceased(convertFhirDateTime((Long) person.attributes.get(Person.DEATHDATE), true));
    }
    String generatedBySynthea = "Generated by <a href=\"https://github.com/synthetichealth/synthea\">Synthea</a>." + "Version identifier: " + Utilities.SYNTHEA_VERSION + " . " + "  Person seed: " + person.seed + "  Population seed: " + person.populationSeed;
    patientResource.setText(new Narrative().setStatus(NarrativeStatus.GENERATED).setDiv(new XhtmlNode(NodeType.Element).setValue(generatedBySynthea)));
    if (USE_SHR_EXTENSIONS) {
        patientResource.setMeta(new Meta().addProfile(SHR_EXT + "shr-entity-Patient"));
        // Patient profile requires race, ethnicity, birthsex,
        // MothersMaidenName, FathersName, Person-extension
        patientResource.addExtension().setUrl(SHR_EXT + "shr-actor-FictionalPerson-extension").setValue(new BooleanType(true));
        String fathersName = (String) person.attributes.get(Person.NAME_FATHER);
        Extension fathersNameExtension = new Extension(SHR_EXT + "shr-entity-FathersName-extension", new HumanName().setText(fathersName));
        patientResource.addExtension(fathersNameExtension);
        String ssn = (String) person.attributes.get(Person.IDENTIFIER_SSN);
        Extension ssnExtension = new Extension(SHR_EXT + "shr-demographics-SocialSecurityNumber-extension", new StringType(ssn));
        patientResource.addExtension(ssnExtension);
    }
    // DALY and QALY values
    // we only write the last(current) one to the patient record
    Double dalyValue = (Double) person.attributes.get("most-recent-daly");
    Double qalyValue = (Double) person.attributes.get("most-recent-qaly");
    if (dalyValue != null) {
        Extension dalyExtension = new Extension(SYNTHEA_EXT + "disability-adjusted-life-years");
        DecimalType daly = new DecimalType(dalyValue);
        dalyExtension.setValue(daly);
        patientResource.addExtension(dalyExtension);
        Extension qalyExtension = new Extension(SYNTHEA_EXT + "quality-adjusted-life-years");
        DecimalType qaly = new DecimalType(qalyValue);
        qalyExtension.setValue(qaly);
        patientResource.addExtension(qalyExtension);
    }
    return newEntry(bundle, patientResource, (String) person.attributes.get(Person.ID));
}

Example 4 with ContactComponent

use of org.hl7.fhir.r4.model.Patient.ContactComponent in project eCRNow by drajer-health.

the class CdaHeaderGenerator method getPatientDetails.

public static String getPatientDetails(Patient p, LaunchDetails details) {
    StringBuilder patientDetails = new StringBuilder();
    patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.RECORD_TARGET_EL_NAME));
    patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.PATIENT_ROLE_EL_NAME));
    List<Identifier> ids = CdaFhirUtilities.getIdentifierForType(p.getIdentifier(), CdaFhirEnumConstants.FHIR_ID_TYPE_MR);
    Boolean addOnce = true;
    if (ids != null && !ids.isEmpty()) {
        for (Identifier id : ids) {
            if (!StringUtils.isEmpty(id.getSystem()) && !StringUtils.isEmpty(id.getValue())) {
                logger.debug("Found Identifier with Type MR");
                String system = CdaGeneratorUtils.getRootOid(id.getSystem(), details.getAssigningAuthorityId());
                patientDetails.append(CdaGeneratorUtils.getXmlForII(system, id.getValue()));
            } else {
                logger.debug("Using Resource Identifier as id");
                if (addOnce) {
                    patientDetails.append(CdaGeneratorUtils.getXmlForII(details.getAssigningAuthorityId(), p.getId()));
                    addOnce = false;
                }
            }
        }
    } else {
        logger.debug("Using Resource Identifier as id");
        patientDetails.append(CdaGeneratorUtils.getXmlForII(details.getAssigningAuthorityId(), p.getId()));
    }
    // Add Address.
    patientDetails.append(CdaFhirUtilities.getAddressXml(p.getAddress()));
    // Add Telecom (Phone)
    patientDetails.append(CdaFhirUtilities.getTelecomXml(p.getTelecom(), false));
    // Add Telecom (Email)
    patientDetails.append(CdaFhirUtilities.getEmailXml(p.getTelecom()));
    // Add patient
    patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.PATIENT_EL_NAME));
    patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.NAME_EL_NAME));
    patientDetails.append(CdaFhirUtilities.getNameXml(p.getName()));
    patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.NAME_EL_NAME));
    patientDetails.append(CdaFhirUtilities.getGenderXml(p.getGenderElement().getValue()));
    patientDetails.append(CdaFhirUtilities.getDateTypeXml(p.getBirthDateElement(), CdaGeneratorConstants.BIRTH_TIME_EL_NAME));
    if (p.getDeceased() == null || (p.getDeceased() != null && p.getDeceased().isEmpty())) {
        patientDetails.append(CdaGeneratorUtils.getXmlForValue(CdaGeneratorConstants.SDTC_DECEASED_IND, CdaGeneratorConstants.CCDA_FALSE));
    } else {
        patientDetails.append(CdaGeneratorUtils.getXmlForValue(CdaGeneratorConstants.SDTC_DECEASED_IND, CdaGeneratorConstants.CCDA_TRUE));
        if (p.getDeceased() instanceof DateTimeType) {
            DateTimeType d = (DateTimeType) p.getDeceased();
            patientDetails.append(CdaFhirUtilities.getDateTimeTypeXml(d, CdaGeneratorConstants.SDTC_DECEASED_TIME));
        } else {
            patientDetails.append(CdaGeneratorUtils.getXmlForNullEffectiveTime(CdaGeneratorConstants.SDTC_DECEASED_TIME, CdaGeneratorConstants.NF_NI));
        }
    }
    Coding race = CdaFhirUtilities.getCodingExtension(p.getExtension(), CdaGeneratorConstants.FHIR_USCORE_RACE_EXT_URL, CdaGeneratorConstants.OMB_RACE_CATEGORY_URL);
    if (race != null && race.getCode() != null) {
        patientDetails.append(CdaGeneratorUtils.getXmlForCD(CdaGeneratorConstants.RACE_CODE_EL_NAME, race.getCode(), CdaGeneratorConstants.RACE_CODE_SYSTEM, CdaGeneratorConstants.RACE_CODE_SYSTEM_NAME, race.getDisplay()));
    } else {
        patientDetails.append(CdaGeneratorUtils.getXmlForNullCD(CdaGeneratorConstants.RACE_CODE_EL_NAME, CdaGeneratorConstants.NF_NI));
    }
    Coding ethnicity = CdaFhirUtilities.getCodingExtension(p.getExtension(), CdaGeneratorConstants.FHIR_USCORE_ETHNICITY_EXT_URL, CdaGeneratorConstants.OMB_RACE_CATEGORY_URL);
    if (ethnicity != null && ethnicity.getCode() != null) {
        patientDetails.append(CdaGeneratorUtils.getXmlForCD(CdaGeneratorConstants.ETHNIC_CODE_EL_NAME, ethnicity.getCode(), CdaGeneratorConstants.RACE_CODE_SYSTEM, CdaGeneratorConstants.RACE_CODE_SYSTEM_NAME, ethnicity.getDisplay()));
    } else {
        patientDetails.append(CdaGeneratorUtils.getXmlForNullCD(CdaGeneratorConstants.ETHNIC_CODE_EL_NAME, CdaGeneratorConstants.NF_NI));
    }
    // Adding Guardian
    if (p.getContact() != null && !p.getContact().isEmpty()) {
        ContactComponent guardianContact = CdaFhirUtilities.getGuardianContact(p.getContact());
        if (guardianContact != null) {
            patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.GUARDIAN_EL_NAME));
            // Add address if found
            if (guardianContact.getAddress() != null) {
                logger.debug("Adding Address for Guardian");
                List<Address> addrs = new ArrayList<>();
                addrs.add(guardianContact.getAddress());
                patientDetails.append(CdaFhirUtilities.getAddressXml(addrs));
            }
            // Add Telecom
            patientDetails.append(CdaFhirUtilities.getTelecomXml(guardianContact.getTelecom(), false));
            patientDetails.append(CdaFhirUtilities.getEmailXml(guardianContact.getTelecom()));
            patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.GUARDIAN_PERSON_EL_NAME));
            patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.NAME_EL_NAME));
            List<HumanName> names = new ArrayList<>();
            names.add(guardianContact.getName());
            patientDetails.append(CdaFhirUtilities.getNameXml(names));
            patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.NAME_EL_NAME));
            patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.GUARDIAN_PERSON_EL_NAME));
            patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.GUARDIAN_EL_NAME));
        }
    }
    patientDetails.append(CdaGeneratorUtils.getXmlForStartElement(CdaGeneratorConstants.LANGUAGE_COMM_EL_NAME));
    Coding language = CdaFhirUtilities.getLanguageForCodeSystem(p.getCommunication(), CdaGeneratorConstants.FHIR_LANGUAGE_CODESYSTEM_URL);
    if (language != null && language.getCode() != null) {
        patientDetails.append(CdaGeneratorUtils.getXmlForCD(CdaGeneratorConstants.LANGUAGE_CODE_EL_NAME, language.getCode()));
    } else {
        patientDetails.append(CdaGeneratorUtils.getXmlForNullCD(CdaGeneratorConstants.LANGUAGE_CODE_EL_NAME, CdaGeneratorConstants.NF_NI));
    }
    patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.LANGUAGE_COMM_EL_NAME));
    patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.PATIENT_EL_NAME));
    patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.PATIENT_ROLE_EL_NAME));
    patientDetails.append(CdaGeneratorUtils.getXmlForEndElement(CdaGeneratorConstants.RECORD_TARGET_EL_NAME));
    return patientDetails.toString();
}

Example 5 with ContactComponent

use of org.hl7.fhir.r4.model.Patient.ContactComponent in project synthea by synthetichealth.

the class FhirStu3 method basicInfo.

/**
 * Map the given Person to a FHIR Patient resource, and add it to the given Bundle.
 *
 * @param person The Person
 * @param bundle The Bundle to add to
 * @param stopTime Time the simulation ended
 * @return The created Entry
 */
@SuppressWarnings("rawtypes")
private static BundleEntryComponent basicInfo(Person person, Bundle bundle, long stopTime) {
    Patient patientResource = new Patient();
    patientResource.addIdentifier().setSystem("https://github.com/synthetichealth/synthea").setValue((String) person.attributes.get(Person.ID));
    Code mrnCode = new Code("http://hl7.org/fhir/v2/0203", "MR", "Medical Record Number");
    patientResource.addIdentifier().setType(mapCodeToCodeableConcept(mrnCode, "http://hl7.org/fhir/v2/0203")).setSystem("http://hospital.smarthealthit.org").setValue((String) person.attributes.get(Person.ID));
    Code ssnCode = new Code("http://hl7.org/fhir/identifier-type", "SB", "Social Security Number");
    patientResource.addIdentifier().setType(mapCodeToCodeableConcept(ssnCode, "http://hl7.org/fhir/identifier-type")).setSystem("http://hl7.org/fhir/sid/us-ssn").setValue((String) person.attributes.get(Person.IDENTIFIER_SSN));
    if (person.attributes.get(Person.IDENTIFIER_DRIVERS) != null) {
        Code driversCode = new Code("http://hl7.org/fhir/v2/0203", "DL", "Driver's License");
        patientResource.addIdentifier().setType(mapCodeToCodeableConcept(driversCode, "http://hl7.org/fhir/v2/0203")).setSystem("urn:oid:2.16.840.1.113883.4.3.25").setValue((String) person.attributes.get(Person.IDENTIFIER_DRIVERS));
    }
    if (person.attributes.get(Person.IDENTIFIER_PASSPORT) != null) {
        Code passportCode = new Code("http://hl7.org/fhir/v2/0203", "PPN", "Passport Number");
        patientResource.addIdentifier().setType(mapCodeToCodeableConcept(passportCode, "http://hl7.org/fhir/v2/0203")).setSystem(SHR_EXT + "passportNumber").setValue((String) person.attributes.get(Person.IDENTIFIER_PASSPORT));
    }
    if (person.attributes.get(Person.CONTACT_EMAIL) != null) {
        ContactComponent contact = new ContactComponent();
        HumanName contactName = new HumanName();
        contactName.setUse(HumanName.NameUse.OFFICIAL);
        contactName.addGiven((String) person.attributes.get(Person.CONTACT_GIVEN_NAME));
        contactName.setFamily((String) person.attributes.get(Person.CONTACT_FAMILY_NAME));
        contact.setName(contactName);
        contact.addTelecom().setSystem(ContactPointSystem.EMAIL).setUse(ContactPointUse.HOME).setValue((String) person.attributes.get(Person.CONTACT_EMAIL));
        patientResource.addContact(contact);
    }
    // We do not yet account for mixed race
    Extension raceExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-race");
    String race = (String) person.attributes.get(Person.RACE);
    String raceDisplay;
    switch(race) {
        case "white":
            raceDisplay = "White";
            break;
        case "black":
            raceDisplay = "Black or African American";
            break;
        case "asian":
            raceDisplay = "Asian";
            break;
        case "native":
            raceDisplay = "American Indian or Alaska Native";
            break;
        case "hawaiian":
            raceDisplay = "Native Hawaiian or Other Pacific Islander";
            break;
        default:
            raceDisplay = "Other";
            break;
    }
    String raceNum = (String) raceEthnicityCodes.get(race);
    Extension raceCodingExtension = new Extension("ombCategory");
    Coding raceCoding = new Coding();
    if (raceDisplay.equals("Other")) {
        raceCoding.setSystem("http://hl7.org/fhir/v3/NullFlavor");
        raceCoding.setCode("UNK");
        raceCoding.setDisplay("Unknown");
    } else {
        raceCoding.setSystem("urn:oid:2.16.840.1.113883.6.238");
        raceCoding.setCode(raceNum);
        raceCoding.setDisplay(raceDisplay);
    }
    raceCodingExtension.setValue(raceCoding);
    raceExtension.addExtension(raceCodingExtension);
    Extension raceTextExtension = new Extension("text");
    raceTextExtension.setValue(new StringType(raceDisplay));
    raceExtension.addExtension(raceTextExtension);
    patientResource.addExtension(raceExtension);
    // We do not yet account for mixed ethnicity
    Extension ethnicityExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity");
    String ethnicity = (String) person.attributes.get(Person.ETHNICITY);
    String ethnicityDisplay;
    if (ethnicity.equals("hispanic")) {
        ethnicity = "hispanic";
        ethnicityDisplay = "Hispanic or Latino";
    } else {
        ethnicity = "nonhispanic";
        ethnicityDisplay = "Not Hispanic or Latino";
    }
    String ethnicityNum = (String) raceEthnicityCodes.get(ethnicity);
    Extension ethnicityCodingExtension = new Extension("ombCategory");
    Coding ethnicityCoding = new Coding();
    ethnicityCoding.setSystem("urn:oid:2.16.840.1.113883.6.238");
    ethnicityCoding.setCode(ethnicityNum);
    ethnicityCoding.setDisplay(ethnicityDisplay);
    ethnicityCodingExtension.setValue(ethnicityCoding);
    ethnicityExtension.addExtension(ethnicityCodingExtension);
    Extension ethnicityTextExtension = new Extension("text");
    ethnicityTextExtension.setValue(new StringType(ethnicityDisplay));
    ethnicityExtension.addExtension(ethnicityTextExtension);
    patientResource.addExtension(ethnicityExtension);
    String firstLanguage = (String) person.attributes.get(Person.FIRST_LANGUAGE);
    Map languageMap = (Map) languageLookup.get(firstLanguage);
    Code languageCode = new Code((String) languageMap.get("system"), (String) languageMap.get("code"), (String) languageMap.get("display"));
    List<PatientCommunicationComponent> communication = new ArrayList<PatientCommunicationComponent>();
    communication.add(new PatientCommunicationComponent(mapCodeToCodeableConcept(languageCode, (String) languageMap.get("system"))));
    patientResource.setCommunication(communication);
    HumanName name = patientResource.addName();
    name.setUse(HumanName.NameUse.OFFICIAL);
    name.addGiven((String) person.attributes.get(Person.FIRST_NAME));
    name.setFamily((String) person.attributes.get(Person.LAST_NAME));
    if (person.attributes.get(Person.NAME_PREFIX) != null) {
        name.addPrefix((String) person.attributes.get(Person.NAME_PREFIX));
    }
    if (person.attributes.get(Person.NAME_SUFFIX) != null) {
        name.addSuffix((String) person.attributes.get(Person.NAME_SUFFIX));
    }
    if (person.attributes.get(Person.MAIDEN_NAME) != null) {
        HumanName maidenName = patientResource.addName();
        maidenName.setUse(HumanName.NameUse.MAIDEN);
        maidenName.addGiven((String) person.attributes.get(Person.FIRST_NAME));
        maidenName.setFamily((String) person.attributes.get(Person.MAIDEN_NAME));
        if (person.attributes.get(Person.NAME_PREFIX) != null) {
            maidenName.addPrefix((String) person.attributes.get(Person.NAME_PREFIX));
        }
        if (person.attributes.get(Person.NAME_SUFFIX) != null) {
            maidenName.addSuffix((String) person.attributes.get(Person.NAME_SUFFIX));
        }
    }
    Extension mothersMaidenNameExtension = new Extension("http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName");
    String mothersMaidenName = (String) person.attributes.get(Person.NAME_MOTHER);
    mothersMaidenNameExtension.setValue(new StringType(mothersMaidenName));
    patientResource.addExtension(mothersMaidenNameExtension);
    long birthdate = (long) person.attributes.get(Person.BIRTHDATE);
    patientResource.setBirthDate(new Date(birthdate));
    Extension birthSexExtension = new Extension("http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex");
    if (person.attributes.get(Person.GENDER).equals("M")) {
        patientResource.setGender(AdministrativeGender.MALE);
        birthSexExtension.setValue(new CodeType("M"));
    } else if (person.attributes.get(Person.GENDER).equals("F")) {
        patientResource.setGender(AdministrativeGender.FEMALE);
        birthSexExtension.setValue(new CodeType("F"));
    }
    patientResource.addExtension(birthSexExtension);
    String state = (String) person.attributes.get(Person.STATE);
    Address addrResource = patientResource.addAddress();
    addrResource.addLine((String) person.attributes.get(Person.ADDRESS)).setCity((String) person.attributes.get(Person.CITY)).setPostalCode((String) person.attributes.get(Person.ZIP)).setState(state);
    if (COUNTRY_CODE != null) {
        addrResource.setCountry(COUNTRY_CODE);
    }
    Address birthplace = new Address();
    birthplace.setCity((String) person.attributes.get(Person.BIRTH_CITY)).setState((String) person.attributes.get(Person.BIRTH_STATE)).setCountry((String) person.attributes.get(Person.BIRTH_COUNTRY));
    Extension birthplaceExtension = new Extension("http://hl7.org/fhir/StructureDefinition/birthPlace");
    birthplaceExtension.setValue(birthplace);
    patientResource.addExtension(birthplaceExtension);
    if (person.attributes.get(Person.MULTIPLE_BIRTH_STATUS) != null) {
        patientResource.setMultipleBirth(new IntegerType((int) person.attributes.get(Person.MULTIPLE_BIRTH_STATUS)));
    } else {
        patientResource.setMultipleBirth(new BooleanType(false));
    }
    patientResource.addTelecom().setSystem(ContactPoint.ContactPointSystem.PHONE).setUse(ContactPoint.ContactPointUse.HOME).setValue((String) person.attributes.get(Person.TELECOM));
    String maritalStatus = ((String) person.attributes.get(Person.MARITAL_STATUS));
    if (maritalStatus != null) {
        Code maritalStatusCode = new Code("http://hl7.org/fhir/v3/MaritalStatus", maritalStatus, maritalStatus);
        patientResource.setMaritalStatus(mapCodeToCodeableConcept(maritalStatusCode, "http://hl7.org/fhir/v3/MaritalStatus"));
    } else {
        Code maritalStatusCode = new Code("http://hl7.org/fhir/v3/MaritalStatus", "S", "Never Married");
        patientResource.setMaritalStatus(mapCodeToCodeableConcept(maritalStatusCode, "http://hl7.org/fhir/v3/MaritalStatus"));
    }
    Point2D.Double coord = person.getLonLat();
    if (coord != null) {
        Extension geolocation = addrResource.addExtension();
        geolocation.setUrl("http://hl7.org/fhir/StructureDefinition/geolocation");
        geolocation.addExtension("latitude", new DecimalType(coord.getY()));
        geolocation.addExtension("longitude", new DecimalType(coord.getX()));
    }
    if (!person.alive(stopTime)) {
        patientResource.setDeceased(convertFhirDateTime((Long) person.attributes.get(Person.DEATHDATE), true));
    }
    String generatedBySynthea = "Generated by <a href=\"https://github.com/synthetichealth/synthea\">Synthea</a>." + "Version identifier: " + Utilities.SYNTHEA_VERSION + " . " + "  Person seed: " + person.seed + "  Population seed: " + person.populationSeed;
    patientResource.setText(new Narrative().setStatus(NarrativeStatus.GENERATED).setDiv(new XhtmlNode(NodeType.Element).setValue(generatedBySynthea)));
    if (USE_SHR_EXTENSIONS) {
        patientResource.setMeta(new Meta().addProfile(SHR_EXT + "shr-entity-Patient"));
        // Patient profile requires race, ethnicity, birthsex,
        // MothersMaidenName, FathersName, Person-extension
        patientResource.addExtension().setUrl(SHR_EXT + "shr-actor-FictionalPerson-extension").setValue(new BooleanType(true));
        String fathersName = (String) person.attributes.get(Person.NAME_FATHER);
        Extension fathersNameExtension = new Extension(SHR_EXT + "shr-entity-FathersName-extension", new HumanName().setText(fathersName));
        patientResource.addExtension(fathersNameExtension);
        String ssn = (String) person.attributes.get(Person.IDENTIFIER_SSN);
        Extension ssnExtension = new Extension(SHR_EXT + "shr-demographics-SocialSecurityNumber-extension", new StringType(ssn));
        patientResource.addExtension(ssnExtension);
        Basic personResource = new Basic();
        // the only required field on this patient resource is code
        Coding fixedCode = new Coding("http://standardhealthrecord.org/fhir/basic-resource-type", "shr-entity-Person", "shr-entity-Person");
        personResource.setCode(new CodeableConcept().addCoding(fixedCode));
        Meta personMeta = new Meta();
        personMeta.addProfile(SHR_EXT + "shr-entity-Person");
        personResource.setMeta(personMeta);
        BundleEntryComponent personEntry = newEntry(person, bundle, personResource);
        patientResource.addExtension().setUrl(SHR_EXT + "shr-entity-Person-extension").setValue(new Reference(personEntry.getFullUrl()));
    }
    // DALY and QALY values
    // we only write the last(current) one to the patient record
    Double dalyValue = (Double) person.attributes.get("most-recent-daly");
    Double qalyValue = (Double) person.attributes.get("most-recent-qaly");
    if (dalyValue != null) {
        Extension dalyExtension = new Extension(SYNTHEA_EXT + "disability-adjusted-life-years");
        DecimalType daly = new DecimalType(dalyValue);
        dalyExtension.setValue(daly);
        patientResource.addExtension(dalyExtension);
        Extension qalyExtension = new Extension(SYNTHEA_EXT + "quality-adjusted-life-years");
        DecimalType qaly = new DecimalType(qalyValue);
        qalyExtension.setValue(qaly);
        patientResource.addExtension(qalyExtension);
    }
    return newEntry(bundle, patientResource, (String) person.attributes.get(Person.ID));
}