use of org.hl7.fhir.dstu3.model.Reference in project gpconnect-demonstrator by nhsconnect.
the class AppointmentResourceProvider method appointmentDetailToAppointmentResourceConverter.
/**
* AppointmentDetail to fhir resource Appointment
*
* @param appointmentDetail
* @return Appointment Resource
*/
private Appointment appointmentDetailToAppointmentResourceConverter(AppointmentDetail appointmentDetail) {
Appointment appointment = new Appointment();
String appointmentId = String.valueOf(appointmentDetail.getId());
String versionId = String.valueOf(appointmentDetail.getLastUpdated().getTime());
String resourceType = appointment.getResourceType().toString();
IdType id = new IdType(resourceType, appointmentId, versionId);
appointment.setId(id);
appointment.getMeta().setVersionId(versionId);
appointment.getMeta().setLastUpdated(appointmentDetail.getLastUpdated());
appointment.getMeta().addProfile(SystemURL.SD_GPC_APPOINTMENT);
Extension extension = new Extension(SystemURL.SD_EXTENSION_GPC_APPOINTMENT_CANCELLATION_REASON, new StringType(appointmentDetail.getCancellationReason()));
appointment.addExtension(extension);
// #157 derive delivery channel from slot
List<Long> sids = appointmentDetail.getSlotIds();
ScheduleDetail scheduleDetail = null;
if (sids.size() > 0) {
// get the first slot but it should not matter because for multi slot appts the deliveryChannel is always the same
SlotDetail slotDetail = slotSearch.findSlotByID(sids.get(0));
String deliveryChannel = slotDetail.getDeliveryChannelCode();
if (deliveryChannel != null && !deliveryChannel.trim().isEmpty()) {
Extension deliveryChannelExtension = new Extension(SystemURL.SD_EXTENSION_GPC_DELIVERY_CHANNEL, new CodeType(deliveryChannel));
appointment.addExtension(deliveryChannelExtension);
}
scheduleDetail = scheduleSearch.findScheduleByID(slotDetail.getScheduleReference());
}
// practitioner role extension here
// lookup the practitioner
Long practitionerID = appointmentDetail.getPractitionerId();
if (practitionerID != null) {
// #195 we need to get this detail from the schedule not the practitioner table
if (scheduleDetail != null) {
Coding roleCoding = new Coding(SystemURL.VS_GPC_PRACTITIONER_ROLE, scheduleDetail.getPractitionerRoleCode(), scheduleDetail.getPractitionerRoleDisplay());
Extension practitionerRoleExtension = new Extension(SystemURL.SD_EXTENSION_GPC_PRACTITIONER_ROLE, new CodeableConcept().addCoding(roleCoding));
appointment.addExtension(practitionerRoleExtension);
}
}
switch(appointmentDetail.getStatus().toLowerCase(Locale.UK)) {
case "pending":
appointment.setStatus(AppointmentStatus.PENDING);
break;
case "booked":
appointment.setStatus(AppointmentStatus.BOOKED);
break;
case "arrived":
appointment.setStatus(AppointmentStatus.ARRIVED);
break;
case "fulfilled":
appointment.setStatus(AppointmentStatus.FULFILLED);
break;
case "cancelled":
appointment.setStatus(AppointmentStatus.CANCELLED);
break;
case "noshow":
appointment.setStatus(AppointmentStatus.NOSHOW);
break;
default:
appointment.setStatus(AppointmentStatus.PENDING);
break;
}
appointment.setStart(appointmentDetail.getStartDateTime());
appointment.setEnd(appointmentDetail.getEndDateTime());
// #218 Date time formats
appointment.getStartElement().setPrecision(TemporalPrecisionEnum.SECOND);
appointment.getEndElement().setPrecision(TemporalPrecisionEnum.SECOND);
List<Reference> slotResources = new ArrayList<>();
for (Long slotId : appointmentDetail.getSlotIds()) {
slotResources.add(new Reference("Slot/" + slotId));
}
appointment.setSlot(slotResources);
if (appointmentDetail.getPriority() != null) {
appointment.setPriority(appointmentDetail.getPriority());
}
appointment.setComment(appointmentDetail.getComment());
appointment.setDescription(appointmentDetail.getDescription());
appointment.addParticipant().setActor(new Reference("Patient/" + appointmentDetail.getPatientId())).setStatus(ParticipationStatus.ACCEPTED);
appointment.addParticipant().setActor(new Reference("Location/" + appointmentDetail.getLocationId())).setStatus(ParticipationStatus.ACCEPTED);
if (null != appointmentDetail.getPractitionerId()) {
appointment.addParticipant().setActor(new Reference("Practitioner/" + appointmentDetail.getPractitionerId())).setStatus(ParticipationStatus.ACCEPTED);
}
if (null != appointmentDetail.getCreated()) {
appointment.setCreated(appointmentDetail.getCreated());
}
if (null != appointmentDetail.getBookingOrganization()) {
// add extension with reference to contained item
String reference = "#1";
Reference orgRef = new Reference(reference);
Extension bookingOrgExt = new Extension(SystemURL.SD_CC_APPOINTMENT_BOOKINGORG, orgRef);
appointment.addExtension(bookingOrgExt);
BookingOrgDetail bookingOrgDetail = appointmentDetail.getBookingOrganization();
Organization bookingOrg = new Organization();
bookingOrg.setId(reference);
bookingOrg.getNameElement().setValue(bookingOrgDetail.getName());
// #198 org phone now persists usetype and system
ContactPoint orgTelecom = bookingOrg.getTelecomFirstRep();
orgTelecom.setValue(bookingOrgDetail.getTelephone());
try {
orgTelecom.setSystem(ContactPointSystem.fromCode(bookingOrgDetail.getSystem().toLowerCase()));
if (bookingOrgDetail.getUsetype() != null && !bookingOrgDetail.getUsetype().trim().isEmpty()) {
orgTelecom.setUse(ContactPointUse.fromCode(bookingOrgDetail.getUsetype().toLowerCase()));
}
} catch (FHIRException ex) {
// Logger.getLogger(AppointmentResourceProvider.class.getName()).log(Level.SEVERE, null, ex);
}
bookingOrg.getMeta().addProfile(SystemURL.SD_GPC_ORGANIZATION);
if (null != bookingOrgDetail.getOrgCode()) {
bookingOrg.getIdentifierFirstRep().setSystem(SystemURL.ID_ODS_ORGANIZATION_CODE).setValue(bookingOrgDetail.getOrgCode());
}
// add contained booking organization resource
appointment.getContained().add(bookingOrg);
}
// if bookingOrganization
appointment.setMinutesDuration(appointmentDetail.getMinutesDuration());
// 1.2.7 set service category from schedule type description
appointment.setServiceCategory(new CodeableConcept().setText(scheduleDetail.getTypeDescription()));
// 1.2.7 set service type from slot type description
appointment.addServiceType(new CodeableConcept().setText(slotSearch.findSlotByID(sids.get(0)).getTypeDisply()));
return appointment;
}
use of org.hl7.fhir.dstu3.model.Reference in project gpconnect-demonstrator by nhsconnect.
the class ScheduleResourceProvider method scheduleDetailToScheduleResourceConverter.
private Schedule scheduleDetailToScheduleResourceConverter(ScheduleDetail scheduleDetail) {
Schedule schedule = new Schedule();
String resourceId = String.valueOf(scheduleDetail.getId());
String versionId = String.valueOf(scheduleDetail.getLastUpdated().getTime());
String resourceType = schedule.getResourceType().toString();
IdType id = new IdType(resourceType, resourceId, versionId);
schedule.setId(id);
schedule.getMeta().setVersionId(versionId);
schedule.getMeta().setLastUpdated(scheduleDetail.getLastUpdated());
if (scheduleDetail.getPractitionerId() != null) {
schedule.addActor(new Reference("Practitioner/" + scheduleDetail.getPractitionerId()));
}
if (scheduleDetail.getPractitionerRoleCode() != null) {
Coding roleCoding = new Coding(SystemURL.VS_GPC_PRACTITIONER_ROLE, scheduleDetail.getPractitionerRoleCode(), scheduleDetail.getPractitionerRoleDisplay());
Extension practitionerRoleExtension = new Extension(SystemURL.SD_EXTENSION_GPC_PRACTITIONER_ROLE, new CodeableConcept().addCoding(roleCoding));
schedule.addExtension(practitionerRoleExtension);
}
// # 194
// Identifier identifier = new Identifier();
// identifier.setSystem(SystemURL.ID_GPC_SCHEDULE_IDENTIFIER);
// identifier.setValue(scheduleDetail.getIdentifier());
// schedule.addIdentifier(identifier);
Coding coding = new Coding().setSystem(SystemURL.HL7_VS_C80_PRACTICE_CODES).setCode(scheduleDetail.getTypeCode()).setDisplay(scheduleDetail.getTypeDescription());
CodeableConcept codableConcept = new CodeableConcept().addCoding(coding);
codableConcept.setText(scheduleDetail.getTypeDescription());
schedule.addActor(new Reference("Location/" + scheduleDetail.getLocationId()));
Period period = new Period();
period.setStart(scheduleDetail.getStartDateTime());
period.setEnd(scheduleDetail.getEndDateTime());
schedule.setPlanningHorizon(period);
// 1.2.7 remove comment
// schedule.setComment(scheduleDetail.getComment());
// 1.2.7 add schedule type description as service category
schedule.setServiceCategory(new CodeableConcept().setText(scheduleDetail.getTypeDescription()));
return schedule;
}
use of org.hl7.fhir.dstu3.model.Reference in project gpconnect-demonstrator by nhsconnect.
the class PatientResourceProvider method StructuredRecordOperation.
@Operation(name = GET_STRUCTURED_RECORD_OPERATION_NAME)
public Bundle StructuredRecordOperation(@ResourceParam Parameters params) throws FHIRException {
Bundle structuredBundle = new Bundle();
Boolean getAllergies = false;
Boolean includeResolved = false;
Boolean getMedications = false;
Boolean includePrescriptionIssues = false;
Period medicationPeriod = null;
String NHS = getNhsNumber(params);
PatientDetails patientDetails = patientSearch.findPatient(NHS);
// see https://nhsconnect.github.io/gpconnect/accessrecord_structured_development_retrieve_patient_record.html#error-handling
if (patientDetails == null || patientDetails.isSensitive() || patientDetails.isDeceased() || !patientDetails.isActive()) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new ResourceNotFoundException("No patient details found for patient ID: " + NHS), SystemCode.PATIENT_NOT_FOUND, IssueType.NOTFOUND);
}
if (NHS.equals(patientNoconsent)) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new ForbiddenOperationException("No patient consent to share for patient ID: " + NHS), SystemCode.NO_PATIENT_CONSENT, IssueType.FORBIDDEN);
}
operationOutcome = null;
for (ParametersParameterComponent param : params.getParameter()) {
if (validateParametersName(param.getName())) {
if (param.getName().equals(SystemConstants.INCLUDE_ALLERGIES)) {
getAllergies = true;
if (param.getPart().isEmpty()) {
// addWarningIssue(param, IssueType.REQUIRED, "Miss parameter part : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES);
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
boolean includeResolvedParameterPartPresent = false;
for (ParametersParameterComponent paramPart : param.getPart()) {
if (paramPart.getName().equals(SystemConstants.INCLUDE_RESOLVED_ALLERGIES)) {
if (paramPart.getValue() instanceof BooleanType) {
includeResolved = Boolean.valueOf(paramPart.getValue().primitiveValue());
includeResolvedParameterPartPresent = true;
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
} else {
addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
// throw OperationOutcomeFactory.buildOperationOutcomeException(
// new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
// SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
}
if (!includeResolvedParameterPartPresent) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
}
if (param.getName().equals(SystemConstants.INCLUDE_MEDICATION)) {
getMedications = true;
boolean isIncludedPrescriptionIssuesExist = false;
for (ParametersParameterComponent paramPart : param.getPart()) {
if (paramPart.getName().equals(SystemConstants.INCLUDE_PRESCRIPTION_ISSUES)) {
if (paramPart.getValue() instanceof BooleanType) {
includePrescriptionIssues = Boolean.valueOf(paramPart.getValue().primitiveValue());
isIncludedPrescriptionIssuesExist = true;
}
} else if (paramPart.getName().equals(SystemConstants.MEDICATION_SEARCH_FROM_DATE) && paramPart.getValue() instanceof DateType) {
DateType startDateDt = (DateType) paramPart.getValue();
medicationPeriod = new Period();
medicationPeriod.setStart(startDateDt.getValue());
medicationPeriod.setEnd(null);
String startDate = startDateDt.asStringValue();
if (!validateStartDateParamAndEndDateParam(startDate, null)) {
// addWarningIssue(param, paramPart, IssueType.INVALID, "Invalid date used");
}
} else {
addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
// throw OperationOutcomeFactory.buildOperationOutcomeException(
// new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
// SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
}
if (!isIncludedPrescriptionIssuesExist) {
// # 1.2.6 now defaults to true if not provided
includePrescriptionIssues = true;
}
}
} else {
// invalid parameter
addWarningIssue(param, IssueType.NOTSUPPORTED);
}
}
// for parameter
// Add Patient
Patient patient = patientDetailsToPatientResourceConverter(patientDetails);
if (patient.getIdentifierFirstRep().getValue().equals(NHS)) {
structuredBundle.addEntry().setResource(patient);
}
// Organization from patient
Set<String> orgIds = new HashSet<>();
orgIds.add(patientDetails.getManagingOrganization());
// Practitioner from patient
Set<String> practitionerIds = new HashSet<>();
List<Reference> practitionerReferenceList = patient.getGeneralPractitioner();
practitionerReferenceList.forEach(practitionerReference -> {
String[] pracRef = practitionerReference.getReference().split("/");
if (pracRef.length > 1) {
practitionerIds.add(pracRef[1]);
}
});
if (getAllergies) {
structuredBundle = structuredAllergyIntoleranceBuilder.buildStructuredAllergyIntolerence(NHS, practitionerIds, structuredBundle, includeResolved);
}
if (getMedications) {
structuredBundle = populateMedicationBundle.addMedicationBundleEntries(structuredBundle, patientDetails, includePrescriptionIssues, medicationPeriod, practitionerIds, orgIds);
}
// Add all practitioners and practitioner roles
for (String practitionerId : practitionerIds) {
Practitioner pracResource = practitionerResourceProvider.getPractitionerById(new IdType(practitionerId));
structuredBundle.addEntry().setResource(pracResource);
List<PractitionerRole> practitionerRoleList = practitionerRoleResourceProvider.getPractitionerRoleByPracticionerId(new IdType(practitionerId));
for (PractitionerRole role : practitionerRoleList) {
String[] split = role.getOrganization().getReference().split("/");
orgIds.add(split[1]);
structuredBundle.addEntry().setResource(role);
}
}
// Add all organizations
for (String orgId : orgIds) {
OrganizationDetails organizationDetails = organizationSearch.findOrganizationDetails(new Long(orgId));
Organization organization = organizationResourceProvider.convertOrganizationDetailsToOrganization(organizationDetails);
structuredBundle.addEntry().setResource(organization);
}
structuredBundle.setType(BundleType.COLLECTION);
structuredBundle.getMeta().addProfile(SystemURL.SD_GPC_STRUCTURED_BUNDLE);
if (operationOutcome != null) {
structuredBundle.addEntry().setResource(operationOutcome);
} else {
removeDuplicateResources(structuredBundle);
}
return structuredBundle;
}
use of org.hl7.fhir.dstu3.model.Reference in project gpconnect-demonstrator by nhsconnect.
the class MedicationRequestResourceProvider method getMedicationRequestFromDetail.
private MedicationRequest getMedicationRequestFromDetail(MedicationRequestDetail requestDetail) {
MedicationRequest medicationRequest = new MedicationRequest();
medicationRequest.setId(requestDetail.getId().toString());
List<Identifier> identifiers = new ArrayList<>();
Identifier identifier = new Identifier().setSystem("https://fhir.nhs.uk/Id/cross-care-setting-identifier").setValue(requestDetail.getGuid());
identifiers.add(identifier);
medicationRequest.setIdentifier(identifiers);
medicationRequest.setMeta(new Meta().addProfile(SystemURL.SD_GPC_MEDICATION_REQUEST));
setBasedOnReferences(medicationRequest, requestDetail);
if (requestDetail.getPrescriptionTypeCode().contains("repeat")) {
medicationRequest.setGroupIdentifier(new Identifier().setValue(requestDetail.getGroupIdentifier()));
}
try {
medicationRequest.setStatus(MedicationRequestStatus.fromCode(requestDetail.getStatusCode()));
} catch (FHIRException e) {
throw new UnprocessableEntityException(e.getMessage());
}
try {
medicationRequest.setIntent(MedicationRequestIntent.fromCode(requestDetail.getIntentCode()));
} catch (FHIRException e) {
throw new UnprocessableEntityException(e.getMessage());
}
if (requestDetail.getMedicationId() != null) {
medicationRequest.setMedication(new Reference(new IdType("Medication", requestDetail.getMedicationId())));
}
if (requestDetail.getPatientId() != null) {
medicationRequest.setSubject(new Reference(new IdType("Patient", requestDetail.getPatientId())));
}
if (requestDetail.getAuthorisingPractitionerId() != null) {
medicationRequest.setRecorder(new Reference(new IdType("Practitioner", requestDetail.getAuthorisingPractitionerId())));
}
if (requestDetail.getPriorMedicationRequestId() != null) {
medicationRequest.setPriorPrescription(new Reference(new IdType("MedicationRequest", requestDetail.getPriorMedicationRequestId())));
}
medicationRequest.setAuthoredOn(requestDetail.getAuthoredOn());
medicationRequest.setDispenseRequest(getDispenseRequestComponent(requestDetail));
// medicationRequest.setRequester(getRequesterComponent(requestDetail)); //TODO - spec needs to clarify whether this should be populated or not
setReasonCodes(medicationRequest, requestDetail);
setNotes(medicationRequest, requestDetail);
if (medicationRequest.getIntent() != MedicationRequestIntent.ORDER) {
setRepeatInformation(medicationRequest, requestDetail);
}
setPrescriptionType(medicationRequest, requestDetail);
setStatusReason(medicationRequest, requestDetail);
String dosageInstructionText = requestDetail.getDosageText();
medicationRequest.addDosageInstruction(new Dosage().setText(dosageInstructionText == null || dosageInstructionText.trim().isEmpty() ? NO_INFORMATION_AVAILABLE : dosageInstructionText).setPatientInstruction(requestDetail.getDosageInstructions()));
return medicationRequest;
}
use of org.hl7.fhir.dstu3.model.Reference in project gpconnect-demonstrator by nhsconnect.
the class SlotResourceProvider method slotDetailToSlotResourceConverter.
private Slot slotDetailToSlotResourceConverter(SlotDetail slotDetail) {
Slot slot = new Slot();
Date lastUpdated = slotDetail.getLastUpdated() == null ? new Date() : slotDetail.getLastUpdated();
String resourceId = String.valueOf(slotDetail.getId());
String versionId = String.valueOf(lastUpdated.getTime());
IdType id = new IdType(resourceId);
slot.setId(id);
slot.getMeta().setVersionId(versionId);
slot.getMeta().addProfile(SystemURL.SD_GPC_SLOT);
slot.setSchedule(new Reference("Schedule/" + slotDetail.getScheduleReference()));
slot.setStart(slotDetail.getStartDateTime());
slot.setEnd(slotDetail.getEndDateTime());
// #218 Date time formats
slot.getStartElement().setPrecision(TemporalPrecisionEnum.SECOND);
slot.getEndElement().setPrecision(TemporalPrecisionEnum.SECOND);
switch(slotDetail.getFreeBusyType().toLowerCase(Locale.UK)) {
case "free":
slot.setStatus(SlotStatus.FREE);
break;
default:
slot.setStatus(SlotStatus.BUSY);
break;
}
String deliveryChannelCode = slotDetail.getDeliveryChannelCode();
ArrayList<Extension> al = new ArrayList<>();
if (deliveryChannelCode != null && !deliveryChannelCode.trim().isEmpty()) {
Extension deliveryChannelExtension = new Extension(SystemURL.SD_EXTENSION_GPC_DELIVERY_CHANNEL, new CodeType(deliveryChannelCode));
al.add(deliveryChannelExtension);
}
slot.setExtension(al);
// 1.2.7 add slot type description as service type
slot.addServiceType(new CodeableConcept().setText(slotDetail.getTypeDisply()));
return slot;
}
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