Examples with DefinitionException org.hl7.fhir.exceptions.DefinitionException used on opensource projects

Example 96 with DefinitionException

use of org.hl7.fhir.exceptions.DefinitionException in project org.hl7.fhir.core by hapifhir.

the class CodeSystemRenderer method generateCodeSystemContent.

private boolean generateCodeSystemContent(XhtmlNode x, CodeSystem cs, boolean hasExtensions, List<UsedConceptMap> maps) throws FHIRFormatError, DefinitionException, IOException {
    XhtmlNode p = x.para();
    if (cs.getContent() == CodeSystemContentMode.COMPLETE)
        p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines the following codes", cs.getUrl()) + ":");
    else if (cs.getContent() == CodeSystemContentMode.EXAMPLE)
        p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines some example codes", cs.getUrl()) + ":");
    else if (cs.getContent() == CodeSystemContentMode.FRAGMENT)
        p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines many codes, of which the following are a subset", cs.getUrl()) + ":");
    else if (cs.getContent() == CodeSystemContentMode.NOTPRESENT) {
        p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines many codes, but they are not represented here", cs.getUrl()));
        return false;
    }
    XhtmlNode t = x.table("codes");
    boolean definitions = false;
    boolean commentS = false;
    boolean deprecated = false;
    boolean display = false;
    boolean hierarchy = false;
    boolean version = false;
    boolean ignoreStatus = false;
    boolean isSupplement = cs.getContent() == CodeSystemContentMode.SUPPLEMENT;
    List<PropertyComponent> properties = new ArrayList<>();
    for (PropertyComponent cp : cs.getProperty()) {
        if (showPropertyInTable(cp)) {
            boolean exists = false;
            for (ConceptDefinitionComponent c : cs.getConcept()) {
                exists = exists || conceptsHaveProperty(c, cp);
            }
            if (exists) {
                properties.add(cp);
                if ("status".equals(cp.getCode())) {
                    ignoreStatus = true;
                }
            }
        }
    }
    for (ConceptDefinitionComponent c : cs.getConcept()) {
        commentS = commentS || conceptsHaveComments(c);
        deprecated = deprecated || conceptsHaveDeprecated(cs, c, ignoreStatus);
        display = display || conceptsHaveDisplay(c);
        version = version || conceptsHaveVersion(c);
        hierarchy = hierarchy || c.hasConcept();
        definitions = definitions || conceptsHaveDefinition(c);
    }
    CodeSystemNavigator csNav = new CodeSystemNavigator(cs);
    hierarchy = hierarchy || csNav.isRestructure();
    List<String> langs = new ArrayList<>();
    addMapHeaders(addTableHeaderRowStandard(t, hierarchy, display, definitions, commentS, version, deprecated, properties, null, false), maps);
    for (ConceptDefinitionComponent c : csNav.getConcepts(null)) {
        hasExtensions = addDefineRowToTable(t, c, 0, hierarchy, display, definitions, commentS, version, deprecated, maps, cs.getUrl(), cs, properties, csNav, langs, isSupplement) || hasExtensions;
    }
    if (langs.size() > 0) {
        Collections.sort(langs);
        x.para().b().tx("Additional Language Displays");
        t = x.table("codes");
        XhtmlNode tr = t.tr();
        tr.td().b().tx("Code");
        for (String lang : langs) tr.td().b().addText(describeLang(lang));
        for (ConceptDefinitionComponent c : cs.getConcept()) {
            addLanguageRow(c, t, langs);
        }
    }
    return hasExtensions;
}

Example 97 with DefinitionException

use of org.hl7.fhir.exceptions.DefinitionException in project org.hl7.fhir.core by hapifhir.

the class CompartmentDefinitionRenderer method render.

public boolean render(XhtmlNode x, CompartmentDefinition cpd) throws FHIRFormatError, DefinitionException, IOException {
    StringBuilder in = new StringBuilder();
    StringBuilder out = new StringBuilder();
    for (CompartmentDefinitionResourceComponent cc : cpd.getResource()) {
        CommaSeparatedStringBuilder rules = new CommaSeparatedStringBuilder();
        if (!cc.hasParam()) {
            out.append(" <li><a href=\"").append(cc.getCode().toLowerCase()).append(".html\">").append(cc.getCode()).append("</a></li>\r\n");
        } else if (!rules.equals("{def}")) {
            for (StringType p : cc.getParam()) rules.append(p.asStringValue());
            in.append(" <tr><td><a href=\"").append(cc.getCode().toLowerCase()).append(".html\">").append(cc.getCode()).append("</a></td><td>").append(rules.toString()).append("</td></tr>\r\n");
        }
    }
    XhtmlNode xn;
    xn = new XhtmlParser().parseFragment("<div><p>\r\nThe following resources may be in this compartment:\r\n</p>\r\n" + "<table class=\"grid\">\r\n" + " <tr><td><b>Resource</b></td><td><b>Inclusion Criteria</b></td></tr>\r\n" + in.toString() + "</table>\r\n" + "<p>\r\nA resource is in this compartment if the nominated search parameter (or chain) refers to the patient resource that defines the compartment.\r\n</p>\r\n" + "<p>\r\n\r\n</p>\r\n" + "<p>\r\nThe following resources are never in this compartment:\r\n</p>\r\n" + "<ul>\r\n" + out.toString() + "</ul></div>\r\n");
    x.getChildNodes().addAll(xn.getChildNodes());
    return true;
}

Example 98 with DefinitionException

use of org.hl7.fhir.exceptions.DefinitionException in project org.hl7.fhir.core by hapifhir.

the class ProfileDrivenRenderer method render.

@Override
public boolean render(XhtmlNode x, ResourceWrapper r) throws FHIRFormatError, DefinitionException, IOException {
    if (context.isAddGeneratedNarrativeHeader()) {
        x.para().b().tx("Generated Narrative");
    }
    if (context.isTechnicalMode()) {
        renderResourceHeader(r, x);
    }
    try {
        StructureDefinition sd = r.getDefinition();
        if (sd == null) {
            throw new FHIRException("Cannot find definition for " + r.fhirType());
        } else {
            ElementDefinition ed = sd.getSnapshot().getElement().get(0);
            containedIds.clear();
            hasExtensions = false;
            generateByProfile(r, sd, r.root(), sd.getSnapshot().getElement(), ed, context.getProfileUtilities().getChildList(sd, ed), x, r.fhirType(), context.isTechnicalMode(), 0);
        }
    } catch (Exception e) {
        System.out.println("Error Generating Narrative for " + r.fhirType() + "/" + r.getId() + ": " + e.getMessage());
        e.printStackTrace();
        x.para().b().style("color: maroon").tx("Exception generating Narrative: " + e.getMessage());
    }
    return hasExtensions;
}

Example 99 with DefinitionException

use of org.hl7.fhir.exceptions.DefinitionException in project org.hl7.fhir.core by hapifhir.

the class ProfileDrivenRenderer method splitExtensions.

private List<PropertyWrapper> splitExtensions(StructureDefinition profile, List<PropertyWrapper> children) throws UnsupportedEncodingException, IOException, FHIRException {
    List<PropertyWrapper> results = new ArrayList<PropertyWrapper>();
    Map<String, PropertyWrapper> map = new HashMap<String, PropertyWrapper>();
    for (PropertyWrapper p : children) if (p.getName().equals("extension") || p.getName().equals("modifierExtension")) {
        // we're going to split these up, and create a property for each url
        if (p.hasValues()) {
            for (BaseWrapper v : p.getValues()) {
                Extension ex = (Extension) v.getBase();
                String url = ex.getUrl();
                StructureDefinition ed = getContext().getWorker().fetchResource(StructureDefinition.class, url);
                if (ed == null) {
                    if (xverManager == null) {
                        xverManager = new XVerExtensionManager(context.getWorker());
                    }
                    if (xverManager.matchingUrl(url) && xverManager.status(url) == XVerExtensionStatus.Valid) {
                        ed = xverManager.makeDefinition(url);
                        getContext().getWorker().generateSnapshot(ed);
                        getContext().getWorker().cacheResource(ed);
                    }
                }
                if (p.getName().equals("modifierExtension") && ed == null) {
                    throw new DefinitionException("Unknown modifier extension " + url);
                }
                PropertyWrapper pe = map.get(p.getName() + "[" + url + "]");
                if (pe == null) {
                    if (ed == null) {
                        if (url.startsWith("http://hl7.org/fhir") && !url.startsWith("http://hl7.org/fhir/us")) {
                            throw new DefinitionException("unknown extension " + url);
                        }
                        // System.out.println("unknown extension "+url);
                        pe = new PropertyWrapperDirect(this.context, new Property(p.getName() + "[" + url + "]", p.getTypeCode(), p.getDefinition(), p.getMinCardinality(), p.getMaxCardinality(), ex), null);
                    } else {
                        ElementDefinition def = ed.getSnapshot().getElement().get(0);
                        pe = new PropertyWrapperDirect(this.context, new Property(p.getName() + "[" + url + "]", "Extension", def.getDefinition(), def.getMin(), def.getMax().equals("*") ? Integer.MAX_VALUE : Integer.parseInt(def.getMax()), ex), ed.getSnapshot().getElementFirstRep());
                        ((PropertyWrapperDirect) pe).getWrapped().setStructure(ed);
                    }
                    results.add(pe);
                } else
                    pe.getValues().add(v);
            }
        }
    } else
        results.add(p);
    return results;
}

Example 100 with DefinitionException

use of org.hl7.fhir.exceptions.DefinitionException in project org.hl7.fhir.core by hapifhir.

the class ProfileDrivenRenderer method getChildrenForPath.

private List<ElementDefinition> getChildrenForPath(List<ElementDefinition> elements, String path) throws DefinitionException {
    // do we need to do a name reference substitution?
    for (ElementDefinition e : elements) {
        if (e.getPath().equals(path) && e.hasContentReference()) {
            String ref = e.getContentReference();
            ElementDefinition t = null;
            // now, resolve the name
            for (ElementDefinition e1 : elements) {
                if (ref.equals("#" + e1.getId()))
                    t = e1;
            }
            if (t == null)
                throw new DefinitionException("Unable to resolve content reference " + ref + " trying to resolve " + path);
            path = t.getPath();
            break;
        }
    }
    List<ElementDefinition> results = new ArrayList<ElementDefinition>();
    for (ElementDefinition e : elements) {
        if (e.getPath().startsWith(path + ".") && !e.getPath().substring(path.length() + 1).contains("."))
            results.add(e);
    }
    return results;
}