use of org.hl7.fhir.r4.model.CanonicalType in project org.hl7.fhir.core by hapifhir.
the class ValueSetComparer method compareDefinitions.
private void compareDefinitions(ConceptSetComponent left, ConceptSetComponent right, StructuralMatch<Element> combined, ConceptSetComponent union, ConceptSetComponent intersection) {
// system must match, but the rest might not. we're going to do the full comparison whatever, so the outcome looks consistent to the user
List<CanonicalType> matchVSR = new ArrayList<>();
for (CanonicalType l : left.getValueSet()) {
CanonicalType r = findInList(right.getValueSet(), l, left.getValueSet());
if (r == null) {
union.getValueSet().add(l);
combined.getChildren().add(new StructuralMatch<Element>(l, vmI(IssueSeverity.INFORMATION, "Removed ValueSet", "ValueSet.compose.include.valueSet")));
} else {
matchVSR.add(r);
if (l.getValue().equals(r.getValue())) {
union.getValueSet().add(l);
intersection.getValueSet().add(l);
StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r, null);
combined.getChildren().add(sm);
} else {
union.getValueSet().add(l);
union.getValueSet().add(r);
StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r, vmI(IssueSeverity.INFORMATION, "Values are different", "ValueSet.compose.include.valueSet"));
combined.getChildren().add(sm);
}
}
}
for (CanonicalType r : right.getValueSet()) {
if (!matchVSR.contains(r)) {
union.getValueSet().add(r);
combined.getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.INFORMATION, "Add ValueSet", "ValueSet.compose.include.valueSet"), r));
}
}
List<ConceptReferenceComponent> matchCR = new ArrayList<>();
for (ConceptReferenceComponent l : left.getConcept()) {
ConceptReferenceComponent r = findInList(right.getConcept(), l, left.getConcept());
if (r == null) {
union.getConcept().add(l);
combined.getChildren().add(new StructuralMatch<Element>(l, vmI(IssueSeverity.INFORMATION, "Removed this Concept", "ValueSet.compose.include.concept")));
} else {
matchCR.add(r);
if (l.getCode().equals(r.getCode())) {
ConceptReferenceComponent cu = new ConceptReferenceComponent();
ConceptReferenceComponent ci = new ConceptReferenceComponent();
union.getConcept().add(cu);
intersection.getConcept().add(ci);
StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r);
combined.getChildren().add(sm);
compareConcepts(l, r, sm, cu, ci);
} else {
union.getConcept().add(l);
union.getConcept().add(r);
StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r, vmI(IssueSeverity.INFORMATION, "Concepts are different", "ValueSet.compose.include.concept"));
combined.getChildren().add(sm);
compareConcepts(l, r, sm, null, null);
}
}
}
for (ConceptReferenceComponent r : right.getConcept()) {
if (!matchCR.contains(r)) {
union.getConcept().add(r);
combined.getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.INFORMATION, "Added this Concept", "ValueSet.compose.include.concept"), r));
}
}
List<ConceptSetFilterComponent> matchFR = new ArrayList<>();
for (ConceptSetFilterComponent l : left.getFilter()) {
ConceptSetFilterComponent r = findInList(right.getFilter(), l, left.getFilter());
if (r == null) {
union.getFilter().add(l);
combined.getChildren().add(new StructuralMatch<Element>(l, vmI(IssueSeverity.INFORMATION, "Removed this item", "ValueSet.compose.include.filter")));
} else {
matchFR.add(r);
if (l.getProperty().equals(r.getProperty()) && l.getOp().equals(r.getOp())) {
ConceptSetFilterComponent cu = new ConceptSetFilterComponent();
ConceptSetFilterComponent ci = new ConceptSetFilterComponent();
union.getFilter().add(cu);
intersection.getFilter().add(ci);
StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r);
combined.getChildren().add(sm);
compareFilters(l, r, sm, cu, ci);
} else {
union.getFilter().add(l);
union.getFilter().add(r);
StructuralMatch<Element> sm = new StructuralMatch<Element>(l, r, vmI(IssueSeverity.INFORMATION, "Codes are different", "ValueSet.compose.include.filter"));
combined.getChildren().add(sm);
compareFilters(l, r, sm, null, null);
}
}
}
for (ConceptSetFilterComponent r : right.getFilter()) {
if (!matchFR.contains(r)) {
union.getFilter().add(r);
combined.getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.INFORMATION, "Added this item", "ValueSet.compose.include.filter"), r));
}
}
}
use of org.hl7.fhir.r4.model.CanonicalType in project org.hl7.fhir.core by hapifhir.
the class CanonicalResourceComparer method compareCanonicalList.
protected void compareCanonicalList(String name, List<CanonicalType> left, List<CanonicalType> right, Map<String, StructuralMatch<String>> comp, IssueSeverity level, CanonicalResourceComparison<? extends CanonicalResource> res, List<CanonicalType> union, List<CanonicalType> intersection) {
List<CanonicalType> matchR = new ArrayList<>();
StructuralMatch<String> combined = new StructuralMatch<String>();
for (CanonicalType l : left) {
CanonicalType r = findCanonicalInList(right, l);
if (r == null) {
union.add(l);
combined.getChildren().add(new StructuralMatch<String>(l.getValue(), vm(IssueSeverity.INFORMATION, "Removed the item '" + l.getValue() + "'", fhirType() + "." + name, res.getMessages())));
} else {
matchR.add(r);
union.add(r);
intersection.add(r);
StructuralMatch<String> sm = new StructuralMatch<String>(l.getValue(), r.getValue());
combined.getChildren().add(sm);
}
}
for (CanonicalType r : right) {
if (!matchR.contains(r)) {
union.add(r);
combined.getChildren().add(new StructuralMatch<String>(vm(IssueSeverity.INFORMATION, "Added the item '" + r.getValue() + "'", fhirType() + "." + name, res.getMessages()), r.getValue()));
}
}
comp.put(name, combined);
}
use of org.hl7.fhir.r4.model.CanonicalType in project org.hl7.fhir.core by hapifhir.
the class CapabilityStatementComparer method compareProfiles.
private void compareProfiles(String path, StructuralMatch<Element> combined, CanonicalType left, CanonicalType right, CapabilityStatementComparison res, CapabilityStatementRestResourceComponent union, CapabilityStatementRestResourceComponent intersection) {
if (!left.hasValue() && !right.hasValue()) {
// nothing in this case
} else if (!left.hasValue()) {
// the intersection is anything in right. The union is everything (or nothing, in this case)
intersection.setProfileElement(right.copy());
combined.getChildren().add(new StructuralMatch<Element>(vmI(IssueSeverity.WARNING, "Added this profile", path), right).setName("profile"));
} else if (!right.hasValue()) {
// the intersection is anything in right. The union is everything (or nothing, in this case)
intersection.setProfileElement(left.copy());
combined.getChildren().add(new StructuralMatch<Element>(left, vmI(IssueSeverity.WARNING, "Removed this profile", path)).setName("profile"));
} else {
// profiles on both sides...
StructureDefinition sdLeft = session.getContextLeft().fetchResource(StructureDefinition.class, left.getValue());
StructureDefinition sdRight = session.getContextRight().fetchResource(StructureDefinition.class, right.getValue());
if (sdLeft == null && sdRight == null) {
combined.getChildren().add(new StructuralMatch<Element>(left, right, vmI(IssueSeverity.ERROR, "Cannot compare profiles because neither is known", path)).setName("profile"));
} else if (sdLeft == null) {
combined.getChildren().add(new StructuralMatch<Element>(left, right, vmI(IssueSeverity.ERROR, "Cannot compare profiles because '" + left.getValue() + "' is not known", path)).setName("profile"));
} else if (sdRight == null) {
combined.getChildren().add(new StructuralMatch<Element>(left, right, vmI(IssueSeverity.ERROR, "Cannot compare profiles because '" + right.getValue() + "' is not known", path)).setName("profile"));
} else if (sdLeft.getUrl().equals(sdRight.getUrl())) {
intersection.setProfileElement(left.copy());
union.setProfileElement(left.copy());
combined.getChildren().add(new StructuralMatch<Element>(left, right).setName("profile"));
} else if (profileInherits(sdLeft, sdRight, session.getContextLeft())) {
// if left inherits from right:
intersection.setProfileElement(left.copy());
union.setProfileElement(right.copy());
combined.getChildren().add(new StructuralMatch<Element>(left, right, vmI(IssueSeverity.WARNING, "Changed this profile to a broader profile", path)).setName("profile"));
} else if (profileInherits(sdRight, sdLeft, session.getContextRight())) {
intersection.setProfileElement(right.copy());
union.setProfileElement(left.copy());
combined.getChildren().add(new StructuralMatch<Element>(left, right, vmI(IssueSeverity.WARNING, "Changed this profile to a narrower one", path)).setName("profile"));
} else {
combined.getChildren().add(new StructuralMatch<Element>(left, right, vmI(IssueSeverity.WARNING, "Different", path)).setName("profile"));
throw new Error("Not done yet");
}
}
}
use of org.hl7.fhir.r4.model.CanonicalType in project org.hl7.fhir.core by hapifhir.
the class GraphQLEngine method processCanonicalReference.
private void processCanonicalReference(Resource context, Base source, Field field, ObjectValue target, boolean inheritedList, String suffix) throws EGraphQLException, FHIRException {
if (!(source instanceof CanonicalType))
throw new EGraphQLException("Not done yet");
if (services == null)
throw new EGraphQLException("Resource Referencing services not provided");
Reference ref = new Reference(source.primitiveValue());
ReferenceResolution res = services.lookup(appInfo, context, ref);
if (res != null) {
if (targetTypeOk(field.getArguments(), res.getTarget())) {
Argument arg = target.addField(field.getAlias() + suffix, listStatus(field, inheritedList));
ObjectValue obj = new ObjectValue();
arg.addValue(obj);
processObject((Resource) res.getTargetContext(), (Base) res.getTarget(), obj, field.getSelectionSet(), inheritedList, suffix);
}
} else if (!hasArgument(field.getArguments(), "optional", "true"))
throw new EGraphQLException("Unable to resolve reference to " + ref.getReference());
}
use of org.hl7.fhir.r4.model.CanonicalType in project org.hl7.fhir.core by hapifhir.
the class QuestionnaireBuilder method addReferenceQuestions.
// Special Types ---------------------------------------------------------------
private void addReferenceQuestions(QuestionnaireItemComponent group, ElementDefinition element, String path, List<CanonicalType> profileURL, List<QuestionnaireResponse.QuestionnaireResponseItemComponent> answerGroups) throws FHIRException {
// var
// rn : String;
// i : integer;
// q : TFhirQuestionnaireGroupQuestion;
ToolingExtensions.addFhirType(group, "Reference");
QuestionnaireItemComponent q = addQuestion(group, QuestionnaireItemType.REFERENCE, null, path, "value", group.getText(), answerGroups);
group.setText(null);
CommaSeparatedStringBuilder rn = new CommaSeparatedStringBuilder();
for (UriType u : profileURL) if (u.getValue().startsWith("http://hl7.org/fhir/StructureDefinition/"))
rn.append(u.getValue().substring(40));
if (rn.length() == 0)
ToolingExtensions.addReferenceFilter(q, "subject=$subj&patient=$subj&encounter=$encounter");
else {
ToolingExtensions.addAllowedResource(q, rn.toString());
ToolingExtensions.addReferenceFilter(q, "subject=$subj&patient=$subj&encounter=$encounter");
}
for (QuestionnaireResponse.QuestionnaireResponseItemComponent ag : answerGroups) ag.setText(null);
}
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