Examples with Element org.hl7.fhir.r5.model.Element used on opensource projects

Example 1 with Element

use of org.hl7.fhir.r5.model.Element in project gpconnect-demonstrator by nhsconnect.

the class AppointmentResourceProvider method updateAppointment.

/**
 * amend or cancel an existing appointment
 *
 * @param appointmentId
 * @param appointment Resource
 * @param theRequest required to access the interaction id
 * @return MethodOutcome
 */
@Update
public MethodOutcome updateAppointment(@IdParam IdType appointmentId, @ResourceParam Appointment appointment, HttpServletRequest theRequest) {
    MethodOutcome methodOutcome = new MethodOutcome();
    OperationOutcome operationalOutcome = new OperationOutcome();
    AppointmentDetail appointmentDetail = appointmentResourceConverterToAppointmentDetail(appointment);
    Meta meta = appointment.getMeta();
    final List<UriType> profiles = meta.getProfile();
    // #203 validations
    VC.execute(new VC[] { new VC(() -> profiles.isEmpty(), () -> "Meta element must be present in Appointment"), new VC(() -> !profiles.get(0).getValue().equalsIgnoreCase(SD_GPC_APPOINTMENT), // what to do if > 1 meta profile element?
    () -> "Meta.profile " + profiles.get(0).getValue() + " is not equal to " + SD_GPC_APPOINTMENT), // #203
    new VC(() -> !appointment.getReason().isEmpty(), () -> "Appointment reason shouldn't be provided!"), new VC(() -> !appointment.getSpecialty().isEmpty(), () -> "Appointment speciality shouldn't be provided!"), // new VC(() -> !appointment.getServiceType().isEmpty(), () -> "Appointment service type shouldn't be provided!"),
    new VC(() -> !appointment.getAppointmentType().isEmpty(), () -> "Appointment type shouldn't be provided!"), new VC(() -> !appointment.getIndication().isEmpty(), () -> "Appointment indication shouldn't be provided!"), new VC(() -> !appointment.getSupportingInformation().isEmpty(), () -> "Appointment supporting information shouldn't be provided!"), new VC(() -> !appointment.getIncomingReferral().isEmpty(), () -> "Appointment incoming referral shouldn't be provided!") });
    // URL ID and Resource ID must be the same
    if (!Objects.equals(appointmentId.getIdPartAsLong(), appointmentDetail.getId())) {
        operationalOutcome.addIssue().setSeverity(IssueSeverity.ERROR).setDiagnostics("Id in URL (" + appointmentId.getIdPart() + ") should match Id in Resource (" + appointmentDetail.getId() + ")");
        methodOutcome.setOperationOutcome(operationalOutcome);
        return methodOutcome;
    }
    // Make sure there is an existing appointment to be amended
    AppointmentDetail oldAppointmentDetail = appointmentSearch.findAppointmentByID(appointmentId.getIdPartAsLong());
    if (oldAppointmentDetail == null) {
        operationalOutcome.addIssue().setSeverity(IssueSeverity.ERROR).setDiagnostics("No appointment details found for ID: " + appointmentId.getIdPart());
        methodOutcome.setOperationOutcome(operationalOutcome);
        return methodOutcome;
    }
    // 1.2.7 set the old service type and service category for comparison with incoming update/cancel content values
    SlotDetail slotDetail1 = slotSearch.findSlotByID(oldAppointmentDetail.getSlotIds().get(0));
    oldAppointmentDetail.setServiceType(slotDetail1.getTypeDisply());
    ScheduleDetail scheduleDetail = scheduleSearch.findScheduleByID(slotDetail1.getScheduleReference());
    oldAppointmentDetail.setServiceCategory(scheduleDetail.getTypeDescription());
    String oldAppointmentVersionId = String.valueOf(oldAppointmentDetail.getLastUpdated().getTime());
    String newAppointmentVersionId = appointmentId.getVersionIdPart();
    if (newAppointmentVersionId != null && !newAppointmentVersionId.equalsIgnoreCase(oldAppointmentVersionId)) {
        throw new ResourceVersionConflictException("The specified version (" + newAppointmentVersionId + ") did not match the current resource version (" + oldAppointmentVersionId + ")");
    }
    // check for absolute reference #200
    Iterator<AppointmentParticipantComponent> iter = appointment.getParticipant().iterator();
    while (iter.hasNext()) {
        AppointmentParticipantComponent participant = iter.next();
        if (participant.getActor() != null) {
            checkReferenceIsRelative(participant.getActor().getReference());
        }
    }
    String interactionId = theRequest.getHeader(SSP_INTERACTIONID);
    // Determine if it is a cancel or an amend. This was previously a check for the presence of a cancellation reason
    // but that is not sufficient. We can sefely assume that the interaction id is populated at this point.
    AppointmentOperation appointmentOperation = null;
    final AppointmentDetail fAppointmentDetail = appointmentDetail;
    switch(interactionId) {
        case REST_CANCEL_APPOINTMENT:
            appointmentOperation = AppointmentOperation.CANCEL;
            // added at 1.2.2
            VC.execute(new VC[] { new VC(() -> appointment.getStatus() != AppointmentStatus.CANCELLED, () -> "Status must be \"cancelled\""), // #203
            new VC(() -> isInThePast(fAppointmentDetail.getStartDateTime()), () -> "The cancellation start date cannot be in the past"), new VC(() -> fAppointmentDetail.getCancellationReason() == null, () -> "The cancellation reason must be provided"), // no point in this since fhir forbids empty elements
            new VC(() -> fAppointmentDetail.getCancellationReason().isEmpty(), () -> "The cancellation reason can not be blank") });
            validateAppointmentExtensions(appointment, profiles, appointmentOperation);
            // #172
            String appointmentType = appointment.getAppointmentType().getText();
            if (appointmentType != null) {
                throwUnprocessableEntity422_InvalidResourceException("The appointment type cannot be updated on a cancellation");
            }
            // This is a Cancellation - so copy across fields which can be
            // altered
            List cancelComparisonResult = compareAppointmentsForInvalidProperty(AppointmentOperation.CANCEL, oldAppointmentDetail, appointmentDetail);
            if (cancelComparisonResult.size() > 0) {
                throwUnprocessableEntity422_InvalidResourceException("Invalid Appointment property has been amended (cancellation) " + cancelComparisonResult);
            }
            oldAppointmentDetail.setCancellationReason(appointmentDetail.getCancellationReason());
            String oldStatus = oldAppointmentDetail.getStatus();
            appointmentDetail = oldAppointmentDetail;
            appointmentDetail.setStatus("cancelled");
            if (!"cancelled".equalsIgnoreCase(oldStatus)) {
                for (Long slotId : appointmentDetail.getSlotIds()) {
                    SlotDetail slotDetail = slotSearch.findSlotByID(slotId);
                    // slotDetail.setAppointmentId(null);
                    slotDetail.setFreeBusyType("FREE");
                    slotDetail.setLastUpdated(new Date());
                    slotStore.saveSlot(slotDetail);
                }
            }
            break;
        case REST_UPDATE_APPOINTMENT:
            appointmentOperation = AppointmentOperation.AMEND;
            VC.execute(new VC[] { new VC(() -> appointment.getStatus() != AppointmentStatus.BOOKED, () -> "Status must be \"booked\""), // this subsumes #161 which only inhibited amendment of the cancellation reason in an amend
            new VC(() -> fAppointmentDetail.getCancellationReason() != null, () -> "Cannot amend cancellation reason in appointment amend"), // added at 1.2.2
            new VC(() -> isInThePast(fAppointmentDetail.getStartDateTime()), () -> "The appointment amend start date cannot be in the past") });
            List amendComparisonResult = compareAppointmentsForInvalidProperty(AppointmentOperation.AMEND, oldAppointmentDetail, appointmentDetail);
            if (amendComparisonResult.size() > 0) {
                throwUnprocessableEntity422_InvalidResourceException("Invalid Appointment property has been amended " + amendComparisonResult);
            }
            validateAppointmentExtensions(appointment, profiles, appointmentOperation);
            // This is an Amend
            oldAppointmentDetail.setComment(appointmentDetail.getComment());
            oldAppointmentDetail.setDescription(appointmentDetail.getDescription());
            appointmentDetail = oldAppointmentDetail;
            break;
        default:
            System.err.println("AppointmentResourceProvider.updateAppointment Unhandled interaction id  " + interactionId);
    }
    // we'll get the delivery channel from the slot
    String deliveryChannel = null;
    String practitionerRoleCode = null;
    String practitionerRoleDisplay = null;
    ScheduleDetail schedule = null;
    // Common to both Update and cancel
    // slots valid?
    List<SlotDetail> slots = new ArrayList<>();
    for (Long slotId : appointmentDetail.getSlotIds()) {
        SlotDetail slotDetail = slotSearch.findSlotByID(slotId);
        if (slotDetail == null) {
            throwUnprocessableEntity422_InvalidResourceException("Slot resource reference is not a valid resource");
        }
        if (deliveryChannel == null) {
            deliveryChannel = slotDetail.getDeliveryChannelCode();
        }
        if (schedule == null) {
            // load the schedule so we can get the Practitioner ID
            schedule = scheduleSearch.findScheduleByID(slotDetail.getScheduleReference());
        }
        if (practitionerRoleDisplay == null) {
            practitionerRoleDisplay = schedule.getPractitionerRoleDisplay();
            practitionerRoleCode = schedule.getPractitionerRoleCode();
        }
        slots.add(slotDetail);
    }
    validateUpdateExtensions(deliveryChannel, practitionerRoleDisplay, practitionerRoleCode, appointment.getExtension());
    // dates valid?
    // #203
    Date firstSlotStart = slots.get(0).getStartDateTime();
    Date lastSlotEnd = slots.get(slots.size() - 1).getEndDateTime();
    // need to insert a colon in the timezone string
    String firstSlotStartStr = TIMESTAMP_FORMAT.format(firstSlotStart).replaceFirst("([0-9]{2})([0-9]{2})$", "$1:$2");
    String lastSlotEndStr = TIMESTAMP_FORMAT.format(lastSlotEnd).replaceFirst("([0-9]{2})([0-9]{2})$", "$1:$2");
    VC.execute(new VC[] { new VC(() -> appointment.getStart().compareTo(firstSlotStart) != 0, () -> String.format("Start date '%s' must match start date of first slot '%s'", appointment.getStart(), firstSlotStart)), new VC(() -> appointment.getEnd().compareTo(lastSlotEnd) != 0, () -> String.format("End date '%s' must match end date of last slot '%s'", appointment.getEnd(), lastSlotEnd)), // #218 strings should match exactly
    new VC(() -> !appointment.getStartElement().getValueAsString().equals(firstSlotStartStr), () -> String.format("Start date '%s' must lexically match start date of first slot '%s'", appointment.getStartElement().getValueAsString(), firstSlotStartStr)), new VC(() -> !appointment.getEndElement().getValueAsString().equals(lastSlotEndStr), () -> String.format("End date '%s' must lexically match end date of last slot '%s'", appointment.getEndElement().getValueAsString(), lastSlotEndStr)), new VC(() -> appointment.getSlot().size() != slots.size(), () -> String.format("Slot count mismatch %d provided appointment has %d", appointment.getSlot().size(), slots.size())) });
    // check the slots match
    HashSet<String> hs = new HashSet<>();
    for (SlotDetail slotDetail : slots) {
        hs.add("Slot/" + slotDetail.getId());
    }
    for (Reference reference : appointment.getSlot()) {
        if (!hs.contains(reference.getReference())) {
            throwUnprocessableEntity422_InvalidResourceException(String.format("Provided slot id %s does not exist in booked appointment", reference.getReference()));
        }
    }
    // Update version and
    appointmentDetail.setLastUpdated(new Date());
    // lastUpdated timestamp
    appointmentDetail = appointmentStore.saveAppointment(appointmentDetail, slots);
    methodOutcome.setId(new IdDt("Appointment", appointmentDetail.getId()));
    methodOutcome.setResource(appointmentDetailToAppointmentResourceConverter(appointmentDetail));
    return methodOutcome;
}

Example 2 with Element

use of org.hl7.fhir.r5.model.Element in project bunsen by cerner.

the class ConceptMaps method expandMappingsIterator.

private static Iterator<Mapping> expandMappingsIterator(ConceptMap map) {
    List<Mapping> mappings = new ArrayList<>();
    for (ConceptMapGroupComponent group : map.getGroup()) {
        for (SourceElementComponent element : group.getElement()) {
            for (TargetElementComponent target : element.getTarget()) {
                Mapping mapping = new Mapping();
                mapping.setConceptMapUri(map.getUrl());
                mapping.setConceptMapVersion(map.getVersion());
                try {
                    String sourceValue = map.getSource() instanceof UriType ? map.getSourceUriType().getValue() : map.getSourceReference().getReference();
                    mapping.setSourceValueSet(sourceValue);
                    String targetValue = map.getTarget() instanceof UriType ? map.getTargetUriType().getValue() : map.getTargetReference().getReference();
                    mapping.setTargetValueSet(targetValue);
                } catch (FHIRException fhirException) {
                    // an exception.
                    throw new RuntimeException(fhirException);
                }
                mapping.setSourceSystem(group.getSource());
                mapping.setSourceValue(element.getCode());
                mapping.setTargetSystem(group.getTarget());
                mapping.setTargetValue(target.getCode());
                if (target.getEquivalence() != null) {
                    mapping.setEquivalence(target.getEquivalence().toCode());
                }
                mappings.add(mapping);
            }
        }
    }
    return mappings.iterator();
}

Example 3 with Element

use of org.hl7.fhir.r5.model.Element in project beneficiary-fhir-data by CMSgov.

the class TransformerUtils method addExtensionValueQuantity.

/**
 * Adds an {@link Extension} to the specified {@link DomainResource}. {@link Extension#getValue()}
 * will be set to a {@link Quantity} with the specified system and value.
 *
 * @param fhirElement the FHIR element to add the {@link Extension} to
 * @param extensionUrl the {@link Extension#getUrl()} to use
 * @param quantitySystem the {@link Quantity#getSystem()} to use
 * @param quantityValue the {@link Quantity#getValue()} to use
 */
static void addExtensionValueQuantity(IBaseHasExtensions fhirElement, String extensionUrl, String quantitySystem, BigDecimal quantityValue) {
    IBaseExtension<?, ?> extension = fhirElement.addExtension();
    extension.setUrl(extensionUrl);
    extension.setValue(new Quantity().setSystem(extensionUrl).setValue(quantityValue));
// CodeableConcept codeableConcept = new CodeableConcept();
// extension.setValue(codeableConcept);
// 
// Coding coding = codeableConcept.addCoding();
// coding.setSystem(codingSystem).setCode(codingCode);
}

Example 4 with Element

use of org.hl7.fhir.r5.model.Element in project beneficiary-fhir-data by CMSgov.

the class R4ExplanationOfBenefitResourceProviderIT method assertEobEquals.

/**
 * Compares two ExplanationOfBenefit objects in detail while working around serialization issues
 * like comparing "0" and "0.0" or creation differences like using "Quantity" vs "SimpleQuantity"
 *
 * @param expected the expected
 * @param actual the actual
 */
private static void assertEobEquals(ExplanationOfBenefit expected, ExplanationOfBenefit actual) {
    // ID in the bundle will have `ExplanationOfBenefit/` in front, so make sure the last bit
    // matches up
    assertTrue(actual.getId().endsWith(expected.getId()));
    // Clean them out so we can do a deep compare later
    actual.setId("");
    expected.setId("");
    // If there are any contained resources, they might have lastupdate times in them too
    assertEquals(expected.getContained().size(), actual.getContained().size());
    for (int i = 0; i < expected.getContained().size(); i++) {
        Resource expectedContained = expected.getContained().get(i);
        Resource actualContained = actual.getContained().get(i);
        expectedContained.getMeta().setLastUpdated(null);
        actualContained.getMeta().setLastUpdated(null);
        // TODO: HAPI seems to be inserting the `#` in the ID of the contained element.
        // This is incorrect according to the FHIR spec:
        // https://build.fhir.org/references.html#contained
        // This works around that problem
        assertEquals("#" + expectedContained.getId(), actualContained.getId());
        expectedContained.setId("");
        actualContained.setId("");
    }
    // Dates are not easy to compare so just make sure they are there
    assertNotNull(actual.getMeta().getLastUpdated());
    // We compared all of meta that we care about so get it out of the way
    expected.getMeta().setLastUpdated(null);
    actual.getMeta().setLastUpdated(null);
    // Created is required, but can't be compared
    assertNotNull(actual.getCreated());
    expected.setCreated(null);
    actual.setCreated(null);
    // Extensions may have `valueMoney` elements
    assertEquals(expected.getExtension().size(), actual.getExtension().size());
    for (int i = 0; i < expected.getExtension().size(); i++) {
        Extension expectedEx = expected.getExtension().get(i);
        Extension actualEx = actual.getExtension().get(i);
        // We have to deal with Money objects separately
        if (expectedEx.hasValue() && expectedEx.getValue() instanceof Money) {
            assertTrue(actualEx.getValue() instanceof Money);
            assertCurrencyEquals((Money) expectedEx.getValue(), (Money) actualEx.getValue());
            // Now remove since we validated so we can compare the rest directly
            expectedEx.setValue(null);
            actualEx.setValue(null);
        }
    }
    // SupportingInfo can have `valueQuantity` that has the 0 vs 0.0 issue
    assertEquals(expected.getSupportingInfo().size(), actual.getSupportingInfo().size());
    for (int i = 0; i < expected.getSupportingInfo().size(); i++) {
        SupportingInformationComponent expectedSup = expected.getSupportingInfo().get(i);
        SupportingInformationComponent actualSup = actual.getSupportingInfo().get(i);
        // We have to deal with Money objects separately
        if (expectedSup.hasValueQuantity()) {
            assertTrue(actualSup.hasValueQuantity());
            assertEquals(expectedSup.getValueQuantity().getValue().floatValue(), actualSup.getValueQuantity().getValue().floatValue(), 0.0);
            // Now remove since we validated so we can compare the rest directly
            expectedSup.setValue(null);
            actualSup.setValue(null);
        }
    }
    // line items
    assertEquals(expected.getItem().size(), actual.getItem().size());
    for (int i = 0; i < expected.getItem().size(); i++) {
        ItemComponent expectedItem = expected.getItem().get(i);
        ItemComponent actualItem = actual.getItem().get(i);
        // Compare value directly because SimpleQuantity vs Quantity can't be compared
        assertEquals(expectedItem.getQuantity().getValue().floatValue(), actualItem.getQuantity().getValue().floatValue(), 0.0);
        expectedItem.setQuantity(null);
        actualItem.setQuantity(null);
        assertEquals(expectedItem.getAdjudication().size(), actualItem.getAdjudication().size());
        for (int j = 0; j < expectedItem.getAdjudication().size(); j++) {
            AdjudicationComponent expectedAdj = expectedItem.getAdjudication().get(j);
            AdjudicationComponent actualAdj = actualItem.getAdjudication().get(j);
            // Here is where we start getting into trouble with "0" vs "0.0", so we do this manually
            if (expectedAdj.hasAmount()) {
                assertNotNull(actualAdj.getAmount());
                assertCurrencyEquals(expectedAdj.getAmount(), actualAdj.getAmount());
            } else {
                // If expected doesn't have an amount, actual shouldn't
                assertFalse(actualAdj.hasAmount());
            }
            // We just checked manually, so null them out and check the rest of the fields
            expectedAdj.setAmount(null);
            actualAdj.setAmount(null);
        }
    }
    // Total has the same problem with values
    assertEquals(expected.getTotal().size(), actual.getTotal().size());
    for (int i = 0; i < expected.getTotal().size(); i++) {
        TotalComponent expectedTot = expected.getTotal().get(i);
        TotalComponent actualTot = actual.getTotal().get(i);
        if (expectedTot.hasAmount()) {
            assertNotNull(actualTot.getAmount());
            assertCurrencyEquals(expectedTot.getAmount(), actualTot.getAmount());
        } else {
            // If expected doesn't have an amount, actual shouldn't
            assertFalse(actualTot.hasAmount());
        }
        expectedTot.setAmount(null);
        actualTot.setAmount(null);
    }
    // Benefit Balance Financial components
    assertEquals(expected.getBenefitBalance().size(), actual.getBenefitBalance().size());
    for (int i = 0; i < expected.getBenefitBalance().size(); i++) {
        BenefitBalanceComponent expectedBen = expected.getBenefitBalance().get(i);
        BenefitBalanceComponent actualBen = actual.getBenefitBalance().get(i);
        assertEquals(expectedBen.getFinancial().size(), actualBen.getFinancial().size());
        for (int j = 0; j < expectedBen.getFinancial().size(); j++) {
            BenefitComponent expectedFinancial = expectedBen.getFinancial().get(j);
            BenefitComponent actualFinancial = actualBen.getFinancial().get(j);
            // Are we dealing with Money?
            if (expectedFinancial.hasUsedMoney()) {
                assertNotNull(actualFinancial.getUsedMoney());
                assertCurrencyEquals(expectedFinancial.getUsedMoney(), actualFinancial.getUsedMoney());
                // Clean up
                expectedFinancial.setUsed(null);
                actualFinancial.setUsed(null);
            }
        }
    }
    // As does payment
    if (expected.hasPayment()) {
        assertTrue(actual.hasPayment());
        assertCurrencyEquals(expected.getPayment().getAmount(), actual.getPayment().getAmount());
    } else {
        // If expected doesn't have an amount, actual shouldn't
        assertFalse(actual.hasPayment());
    }
    expected.getPayment().setAmount(null);
    actual.getPayment().setAmount(null);
    // Now for the grand finale, we can do an `equalsDeep` on the rest
    assertTrue(expected.equalsDeep(actual));
}

Example 5 with Element

use of org.hl7.fhir.r5.model.Element in project kindling by HL7.

the class Publisher method stripWhitespaceAndComments.

private void stripWhitespaceAndComments(Node node) {
    if (node.getNodeType() == Node.ELEMENT_NODE) {
        Element e = (Element) node;
        Map<String, String> attrs = new HashMap<String, String>();
        for (int i = e.getAttributes().getLength() - 1; i >= 0; i--) {
            attrs.put(e.getAttributes().item(i).getNodeName(), e.getAttributes().item(i).getNodeValue());
            e.removeAttribute(e.getAttributes().item(i).getNodeName());
        }
        for (String n : attrs.keySet()) {
            e.setAttribute(n, attrs.get(n));
        }
    }
    for (int i = node.getChildNodes().getLength() - 1; i >= 0; i--) {
        Node c = node.getChildNodes().item(i);
        if (c.getNodeType() == Node.TEXT_NODE && c.getTextContent().trim().length() == 0)
            node.removeChild(c);
        else if (c.getNodeType() == Node.TEXT_NODE)
            c.setTextContent(c.getTextContent().trim());
        else if (c.getNodeType() == Node.COMMENT_NODE)
            node.removeChild(c);
        else if (c.getNodeType() == Node.ELEMENT_NODE)
            stripWhitespaceAndComments(c);
    }
    if (node.getNodeType() == Node.ELEMENT_NODE) {
        node.appendChild(node.getOwnerDocument().createTextNode("\r\n"));
    }
}