Examples with ConceptMap org.hl7.fhir.r4.model.ConceptMap used on opensource projects

Example 6 with ConceptMap

use of org.hl7.fhir.r4.model.ConceptMap in project kindling by HL7.

the class PageProcessor method generateValueSetUsage.

private String generateValueSetUsage(ValueSet vs, String prefix, boolean addTitle) throws Exception {
    List<String> items = new ArrayList<>();
    if (vs.hasUrl()) {
        for (CodeSystem cs : getCodeSystems().getList()) {
            if (cs != null) {
                if (vs.getUrl().equals(cs.getValueSet())) {
                    String p = cs.getUserString("path");
                    addItem(items, "<li>CodeSystem: This value set is the designated 'entire code system' value set for <a href=\"" + (Utilities.isAbsoluteUrl(p) ? "" : prefix) + p + "\">" + cs.getName() + "</a> " + "</li>\r\n");
                }
            }
        }
    }
    for (ConceptMap cm : getConceptMaps().getList()) {
        String p = cm.getUserString("path");
        if (cm.hasSourceUriType() && cm.getSourceUriType().equals(vs.getUrl())) {
            addItem(items, "<li>ConceptMap: Translation source in <a href=\"" + (Utilities.isAbsoluteUrl(p) ? "" : prefix) + p + "\">" + cm.present() + "</a> " + "</li>\r\n");
        } else if (cm.hasSourceCanonicalType() && (cm.getSourceCanonicalType().getValue().equals(vs.getUrl()) || vs.getUrl().endsWith("/" + cm.getSourceCanonicalType().getValue()))) {
            addItem(items, "<li>ConceptMap: Translation source in <a href=\"" + (Utilities.isAbsoluteUrl(p) ? "" : prefix) + p + "\">" + cm.getName() + "</a> " + "</li>\r\n");
        }
    }
    for (ConceptMap cm : getConceptMaps().getList()) {
        String p = cm.getUserString("path");
        if (cm.hasTargetUriType() && cm.getTargetUriType().equals(vs.getUrl())) {
            addItem(items, "<li>ConceptMap: Translation target in <a href=\"" + (Utilities.isAbsoluteUrl(p) ? "" : prefix) + p + "\">" + cm.present() + "</a> " + "</li>\r\n");
        } else if (cm.hasTargetCanonicalType() && (cm.getTargetCanonicalType().getValue().equals(vs.getUrl()) || vs.getUrl().endsWith("/" + cm.getTargetCanonicalType().getValue()))) {
            addItem(items, "<li>ConceptMap: Translation target ConceptMap <a href=\"" + (Utilities.isAbsoluteUrl(p) ? "" : prefix) + p + "\">" + cm.getName() + "</a> " + "</li>\r\n");
        }
    }
    for (ResourceDefn r : definitions.getBaseResources().values()) {
        scanForUsage(items, vs, r.getRoot(), r.getName().toLowerCase() + "-definitions.html", prefix);
        scanForOperationUsage(items, vs, r, r.getName().toLowerCase() + "-operation-", prefix);
        scanForProfileUsage(items, vs, r, prefix);
    }
    for (ResourceDefn r : definitions.getResources().values()) {
        scanForUsage(items, vs, r.getRoot(), r.getName().toLowerCase() + "-definitions.html", prefix);
        scanForOperationUsage(items, vs, r, r.getName().toLowerCase() + "-operation-", prefix);
        scanForProfileUsage(items, vs, r, prefix);
    }
    for (ElementDefn e : definitions.getInfrastructure().values()) {
        scanForUsage(items, vs, e, definitions.getSrcFile(e.getName()) + "-definitions.html", prefix);
    }
    for (ElementDefn e : definitions.getTypes().values()) {
        if (!definitions.dataTypeIsSharedInfo(e.getName())) {
            scanForUsage(items, vs, e, definitions.getSrcFile(e.getName()) + "-definitions.html", prefix);
        }
    }
    for (StructureDefinition sd : workerContext.getExtensionDefinitions()) {
        scanForUsage(items, vs, sd, sd.getUserString("path"), prefix);
    }
    for (ValueSet vsi : definitions.getValuesets().getList()) {
        String path = (String) vsi.getUserData("path");
        if (vs.hasCompose()) {
            for (ConceptSetComponent t : vs.getCompose().getInclude()) {
                for (UriType uri : t.getValueSet()) {
                    if (uri.getValue().equals(vs.getUrl())) {
                        addItem(items, "<li>ValueSet: Included in <a href=\"" + prefix + path + "\">" + Utilities.escapeXml(vs.present()) + "</a></li>\r\n");
                    }
                }
            }
            for (ConceptSetComponent t : vs.getCompose().getExclude()) {
                for (UriType uri : t.getValueSet()) {
                    if (uri.getValue().equals(vs.getUrl())) {
                        addItem(items, "<li>ValueSet: Excluded from  <a href=\"" + prefix + path + "\">" + Utilities.escapeXml(vs.present()) + "</a></li>\r\n");
                    }
                }
            }
        // for (ConceptSetComponent t : vsi.getCompose().getInclude()) {
        // if (vs.hasCodeSystem() && t.getSystem().equals(vs.getCodeSystem().getSystem()))
        // b.append(" <li>Included in Valueset <a href=\""+prefix+path+"\">"+Utilities.escapeXml(vs.getName())+"</a></li>\r\n");
        // }
        // for (ConceptSetComponent t : vsi.getCompose().getExclude()) {
        // if (vs.hasCodeSystem() && t.getSystem().equals(vs.getCodeSystem().getSystem()))
        // b.append(" <li>Excluded in Valueset <a href=\""+prefix+path+"\">"+Utilities.escapeXml(vs.getName())+"</a></li>\r\n");
        // }
        }
    }
    if (ini.getPropertyNames(vs.getUrl()) != null) {
        for (String n : ini.getPropertyNames(vs.getUrl())) {
            addItem(items, "<li>" + ini.getStringProperty(vs.getUrl(), n) + "</li>\r\n");
        }
    }
    if (items.size() == 0)
        return "<p>\r\nThis value set is not currently used\r\n</p>\r\n";
    else {
        StringBuilder b = new StringBuilder();
        for (String s : items) {
            b.append(" " + s);
        }
        return (addTitle ? "<p>\r\nThis value set is used in the following places:\r\n</p>\r\n" : "") + "<ul>\r\n" + b.toString() + "</ul>\r\n";
    }
}

Example 7 with ConceptMap

use of org.hl7.fhir.r4.model.ConceptMap in project kindling by HL7.

the class PageProcessor method genConceptMapsTable.

private String genConceptMapsTable() throws Exception {
    StringBuilder s = new StringBuilder();
    s.append("<table class=\"codes\">\r\n");
    s.append(" <tr><td><b>Name</b></td><td><b>Source</b></td><td><b>Target</b></td></tr>\r\n");
    List<String> sorts = new ArrayList<String>();
    sorts.addAll(conceptMaps.keys());
    Collections.sort(sorts);
    for (String sn : sorts) {
        ConceptMap ae = conceptMaps.get(sn);
        // String n = sn.substring(23);
        ConceptMap cm = ae;
        s.append(" <tr><td><a href=\"").append(ae.getUserData("path")).append("\">").append(cm.getName()).append("</a></td>").append("<td><a href=\"").append(getValueSetRef("", cm.hasSourceCanonicalType() ? (cm.getSourceCanonicalType()).getValue() : cm.getSourceUriType().asStringValue())).append("\">").append(describeValueSetByRef(cm.getSource())).append("</a></td>").append("<td><a href=\"").append(getValueSetRef("", cm.hasTargetCanonicalType() ? (cm.getTargetCanonicalType()).getValue() : cm.getTargetUriType().asStringValue())).append("\">").append(describeValueSetByRef(cm.getTarget())).append("</a></td></tr>\r\n");
    }
    s.append("</table>\r\n");
    return s.toString();
}

Example 8 with ConceptMap

use of org.hl7.fhir.r4.model.ConceptMap in project kindling by HL7.

the class PageProcessor method genNSList.

private String genNSList() throws Exception {
    StringBuilder b = new StringBuilder();
    b.append("<p>Redirects on this page:</p>\r\n");
    b.append("<ul>\r\n");
    b.append(" <li>Resources</li>\r\n");
    b.append(" <li>Data Types</li>\r\n");
    b.append(" <li>Code Systems</li>\r\n");
    b.append(" <li>Value Sets</li>\r\n");
    b.append(" <li>Extensions</li>\r\n");
    b.append(" <li>Profiles</li>\r\n");
    b.append(" <li>Naming Systems</li>\r\n");
    b.append(" <li>Examples</li>\r\n");
    b.append(" <li>Compartments</li>\r\n");
    b.append(" <li>Data Elements</li>\r\n");
    b.append(" <li>Search Parameters</li>\r\n");
    b.append(" <li>Implementation Guides</li>\r\n");
    b.append(" <li>SIDs</li>\r\n");
    b.append(" <li>Others From publish.ini</li>\r\n");
    b.append("</ul>\r\n");
    b.append("<table class=\"grid\">\r\n");
    b.append(" <tr><td><b>URL</b></td><td><b>Thing</b></td><td><b>Page</b></td></tr>");
    for (String n : definitions.sortedResourceNames()) definitions.addNs("http://hl7.org/fhir/" + n, n + " Resource", n.toLowerCase() + ".html");
    for (String n : definitions.getTypes().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Data Type " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (String n : definitions.getPrimitives().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Primitive Data Type " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (String n : definitions.getConstraints().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Data Type Profile " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (String n : definitions.getInfrastructure().keySet()) definitions.addNs("http://hl7.org/fhir/" + n, "Data Type " + n, definitions.getSrcFile(n) + ".html#" + n);
    for (CodeSystem cs : getCodeSystems().getList()) if (cs != null && cs.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(cs.getUrl(), "CodeSystem " + cs.getName(), cs.getUserString("path"));
    for (ValueSet vs : getValueSets().getList()) if (vs.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(vs.getUrl(), "ValueSet " + vs.present(), vs.getUserString("path"));
    for (ConceptMap cm : getConceptMaps().getList()) if (cm.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(cm.getUrl(), "Concept Map" + cm.getName(), cm.getUserString("path"));
    for (StructureDefinition sd : profiles.getList()) if (sd.getUrl().startsWith("http://hl7.org/fhir") && !definitions.getResourceTemplates().containsKey(sd.getName()))
        definitions.addNs(sd.getUrl(), "Profile " + sd.getName(), sd.getUserString("path"));
    for (StructureDefinition sd : workerContext.getExtensionDefinitions()) if (sd.getUrl().startsWith("http://hl7.org/fhir"))
        definitions.addNs(sd.getUrl(), "Profile " + sd.getName(), sd.getUserString("path"));
    for (NamingSystem nss : definitions.getNamingSystems()) {
        String url = null;
        definitions.addNs("http://hl7.org/fhir/NamingSystem/" + nss.getId(), "System " + nss.getName(), nss.getUserString("path"));
        for (NamingSystemUniqueIdComponent t : nss.getUniqueId()) {
            if (t.getType() == NamingSystemIdentifierType.URI)
                url = t.getValue();
        }
        if (url != null && url.startsWith("http://hl7.org/fhir"))
            definitions.addNs(url, "System " + nss.getName(), nss.getUserString("path"));
    }
    for (String n : ini.getPropertyNames("redirects")) {
        String[] parts = ini.getStringProperty("redirects", n).split("\\;");
        definitions.addNs(n, "System " + parts[0], parts[1]);
    }
    for (ImplementationGuideDefn ig : definitions.getIgs().values()) {
        if (!ig.isCore()) {
            definitions.addNs("http://hl7.org/fhir/ImplementationGuide/" + ig.getCode(), ig.getName(), ig.getHomePage());
            definitions.addNs("http://hl7.org/fhir/" + ig.getCode(), ig.getName(), ig.getHomePage());
        }
    }
    for (Compartment t : definitions.getCompartments()) {
        definitions.addNs(t.getUri(), t.getName(), "compartmentdefinition.html#" + t.getName());
    }
    List<String> list = new ArrayList<String>();
    list.addAll(definitions.getRedirectList().keySet());
    Collections.sort(list);
    for (String url : list) {
        NamespacePair p = definitions.getRedirectList().get(url);
        b.append(" <tr><td>" + Utilities.escapeXml(url) + "</td><td>" + hsplt(Utilities.escapeXml(p.desc)) + "</td><td><a href=\"" + p.page + "\">" + hsplt(Utilities.escapeXml(p.page)) + "</a></td></tr>\r\n");
    }
    b.append("</table>\r\n");
    b.append("<p>" + Integer.toString(list.size()) + " Entries</p>\r\n");
    return b.toString();
}

Example 9 with ConceptMap

use of org.hl7.fhir.r4.model.ConceptMap in project kindling by HL7.

the class CodeListToValueSetParser method generateConceptMapV2.

private void generateConceptMapV2(String v2map, ValueSet vs, CodeSystem cs) throws Exception {
    ConceptMap cm = new ConceptMap();
    cm.setId("cm-" + vs.getId() + "-v2");
    cm.setVersion(version);
    cm.setUserData("path", cm.getId() + ".html");
    cm.setUserData("generate", true);
    cm.setUrl("http://hl7.org/fhir/ConceptMap/" + cm.getId());
    cm.setName("v2." + vs.getName());
    cm.setTitle("v2 map for " + vs.present());
    cm.setPublisher("HL7 (FHIR Project)");
    for (ContactDetail cc : vs.getContact()) {
        ContactDetail cd = cm.addContact();
        cd.setName(cc.getName());
        for (ContactPoint ccs : cc.getTelecom()) cd.addTelecom(ccs.copy());
    }
    cm.setCopyright(vs.getCopyright());
    // until we publish DSTU, then .review
    cm.setStatus(vs.getStatus());
    cm.setDate(vs.getDate());
    cm.setSource(Factory.newCanonical(vs.getUrl()));
    cm.setTarget(Factory.newCanonical(v2map));
    if (cs != null)
        processV2ConceptDefs(cm, cs.getUrl(), cs.getConcept());
    for (ConceptSetComponent cc : vs.getCompose().getInclude()) for (ConceptReferenceComponent c : cc.getConcept()) {
        processV2Map(cm, cc.getSystem(), c.getCode(), c.getUserString("v2"));
    }
    maps.see(cm, packageInfo);
}

Example 10 with ConceptMap

use of org.hl7.fhir.r4.model.ConceptMap in project kindling by HL7.

the class CodeListToValueSetParser method processV2ConceptDefs.

private void processV2ConceptDefs(ConceptMap cm, String url, List<ConceptDefinitionComponent> list) throws Exception {
    for (ConceptDefinitionComponent c : list) {
        processV2Map(cm, url, c.getCode(), c.getUserString("v2"));
        processV2ConceptDefs(cm, url, c.getConcept());
    }
}