Examples with Use org.hl7.fhir.r4.model.ExplanationOfBenefit.Use used on opensource projects

Example 61 with Use

use of org.hl7.fhir.r4.model.ExplanationOfBenefit.Use in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7NoteFHIRConverterTest method testNoteCreationServiceRequestMutipleOBX.

// Suppress warnings about too many assertions in a test.  Justification: creating a FHIR message is very costly; we need to check many asserts per creation for efficiency.
@java.lang.SuppressWarnings("squid:S5961")
@ParameterizedTest
@MethodSource("provideParmsForNoteCreationServiceRequestMutipleOBX")
void testNoteCreationServiceRequestMutipleOBX(String message, int numExpectedDiagnosticReports) {
    String hl7ORU = "MSH|^~\\&|||||20180924152907||" + message + "|213|T|2.3.1|||||||||||\n" + "PID|||Pract1ID^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // "NTE|1|O|TEST NOTE DD line 1|\n" + "NTE|2|O|TEST NOTE DD line 2 |\n" + "NTE|3|O|TEST NOTE D line 3|\n"
    "PV1|1|I||||||||||||||||||||||||||||||||||||||||||20180924152707|\n" + "ORC|RE|248648498^|248648498^|ML18267-C00001^Beaker|||||||||||||||||||||||||||\n" + "OBR|1|248648498^|248648498^|83036E^HEMOGLOBIN A1C^PACSEAP^^^^^^HEMOGLOBIN A1C||||||||||||||||||||||||||||||||||||\n" + // ServiceRequest NTE has a practitioner reference in NTE.5
    "NTE|1|O|TEST ORC/OBR NOTE AA line 1||Pract1ID^Pract1Last^Pract1First|\n" + "NTE|2|O|TEST NOTE AA line 2|\n" + "NTE|3|O|TEST NOTE AA line 3|\n" + "OBX|1|NM|17985^GLYCOHEMOGLOBIN HGB A1C^LRR^^^^^^GLYCOHEMOGLOBIN HGB A1C||5.6|%|<6.0||||F||||||||||||||\n" + // GLYCOHEMOGLOBIN Observation NTE has a practitioner reference in NTE.5.  Note in second NTE. The first valied NTE.5 is used.
    "NTE|1|L|TEST OBXa NOTE BB line 1|\n" + "NTE|2|L|TEST NOTE BB line 2||Pract2ID^Pract2Last^Pract2First|\n" + "NTE|3|L|TEST NOTE BB line 3|\n" + "OBX|2|NM|17853^MEAN BLOOD GLUCOSE^LRR^^^^^^MEAN BLOOD GLUCOSE||114.02|mg/dL|||||F||||||||||||||\n" + // Glucose Observation NTE has no practitioner reference in NTE.5
    "NTE|1|L|TEST OBXb NOTE CC line 1|\n" + "NTE|2|L|TEST NOTE CC line 2|\n" + // Test that blank lines are preserved.
    "NTE|3|L| |\n" + "NTE|4|L|TEST NOTE CC line 4|\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7ORU);
    List<Resource> diagnosticReports = ResourceUtils.getResourceList(e, ResourceType.DiagnosticReport);
    // DiagnosticReport expected for ORU, but not for ORM
    // From the OBR in the ORU test case
    assertThat(diagnosticReports).hasSize(numExpectedDiagnosticReports);
    // One ServiceRequest contains NTE for ORC/OBR
    List<Resource> serviceRequests = ResourceUtils.getResourceList(e, ResourceType.ServiceRequest);
    assertThat(serviceRequests).hasSize(1);
    ServiceRequest serviceRequest = ResourceUtils.getResourceServiceRequest(serviceRequests.get(0), ResourceUtils.context);
    assertThat(serviceRequest.hasNote()).isTrue();
    assertThat(serviceRequest.getNote()).hasSize(1);
    // Processing adds "  \n" two spaces and a line feed between each line.
    // NOTE: the note contains an Annotation, which contains a MarkdownType that has the string.
    // Must use getTextElement().getValueAsString() to see untrimmed contents.
    assertThat(serviceRequest.getNote().get(0).getTextElement().getValueAsString()).isEqualTo("TEST ORC/OBR NOTE AA line 1  \nTEST NOTE AA line 2  \nTEST NOTE AA line 3");
    assertThat(serviceRequest.getNote().get(0).hasAuthorReference()).isTrue();
    String practitionerServReqRefId = serviceRequest.getNote().get(0).getAuthorReference().getReference();
    // Two observations.  One has GLYCOHEMOGLOBIN and notes BB, One has GLUCOSE and notes CC
    List<Resource> observations = ResourceUtils.getResourceList(e, ResourceType.Observation);
    // Should be 2 for ORU and ORM
    assertThat(observations).hasSize(2);
    Observation obsGlucose = ResourceUtils.getResourceObservation(observations.get(0), ResourceUtils.context);
    Observation obsHemoglobin = ResourceUtils.getResourceObservation(observations.get(1), ResourceUtils.context);
    // Figure out which is first and reassign if needed for testing
    if (obsGlucose.getCode().getText() != "MEAN BLOOD GLUCOSE") {
        Observation temp = obsGlucose;
        obsGlucose = obsHemoglobin;
        obsHemoglobin = temp;
    }
    // Validate the note contents and references
    assertThat(obsHemoglobin.hasNote()).isTrue();
    assertThat(obsHemoglobin.getNote()).hasSize(1);
    assertThat(obsHemoglobin.getNote().get(0).getTextElement().getValueAsString()).isEqualTo("TEST OBXa NOTE BB line 1  \nTEST NOTE BB line 2  \nTEST NOTE BB line 3");
    assertThat(obsHemoglobin.getNote().get(0).hasAuthorReference()).isTrue();
    String practitionerObsHemoglobinRefId = obsHemoglobin.getNote().get(0).getAuthorReference().getReference();
    assertThat(obsGlucose.hasNote()).isTrue();
    assertThat(obsGlucose.getNote()).hasSize(1);
    assertThat(obsGlucose.getNote().get(0).getTextElement().getValueAsString()).isEqualTo(// Test that blank lines are preserved.
    "TEST OBXb NOTE CC line 1  \nTEST NOTE CC line 2  \n   \nTEST NOTE CC line 4");
    assertThat(obsGlucose.getNote().get(0).hasAuthorReference()).isFalse();
    // Two Practitioners, one for the serviceRequest, one for the GLYCOHEMOGLOBIN Observation
    List<Resource> practitioners = ResourceUtils.getResourceList(e, ResourceType.Practitioner);
    assertThat(practitioners).hasSize(2);
    Practitioner practitionerServReq = ResourceUtils.getResourcePractitioner(practitioners.get(0), ResourceUtils.context);
    Practitioner practitionerObsHemoglobin = ResourceUtils.getResourcePractitioner(practitioners.get(1), ResourceUtils.context);
    // Adjust to correct practitioner if needed
    if (!practitionerServReq.getIdentifierFirstRep().getValue().contentEquals("Pract1ID")) {
        Practitioner temp = practitionerObsHemoglobin;
        practitionerObsHemoglobin = practitionerServReq;
        practitionerServReq = temp;
    }
    // Check the values for the Practitioners and validate match to references.
    assertThat(practitionerServReq.getIdentifier()).hasSize(1);
    assertThat(practitionerServReq.getIdentifierFirstRep().getValue()).isEqualTo("Pract1ID");
    assertThat(practitionerServReq.getName()).hasSize(1);
    assertThat(practitionerServReq.getNameFirstRep().getText()).isEqualTo("Pract1First Pract1Last");
    // Check the cross-reference
    assertThat(practitionerServReq.getId()).isEqualTo(practitionerServReqRefId);
    // Sanity check to confirm data corruption in meta content has not returned.
    CodeableConcept ccSourceEventTrigger = (CodeableConcept) practitionerServReq.getMeta().getExtensionByUrl("http://ibm.com/fhir/cdm/StructureDefinition/source-event-trigger").getValue();
    assertThat(ccSourceEventTrigger.hasText()).isFalse();
    assertThat(practitionerObsHemoglobin.getIdentifier()).hasSize(1);
    assertThat(practitionerObsHemoglobin.getIdentifierFirstRep().getValue()).isEqualTo("Pract2ID");
    assertThat(practitionerObsHemoglobin.getName()).hasSize(1);
    assertThat(practitionerObsHemoglobin.getNameFirstRep().getText()).isEqualTo("Pract2First Pract2Last");
    // Check the cross-reference
    assertThat(practitionerObsHemoglobin.getId()).isEqualTo(practitionerObsHemoglobinRefId);
}

Example 62 with Use

use of org.hl7.fhir.r4.model.ExplanationOfBenefit.Use in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method dosageInstructionTestRateQuantityRXO.

@Test
void dosageInstructionTestRateQuantityRXO() {
    // Test dosageInstruction.rateQuantity where RXO.21 exists and RXO.17 does not exist -> use RXO segment, no range
    String hl7message = "MSH|^~\\\\&|||||20210101000000||OMP^O09|MSGID|T|2.6\n" + "PID|||1234||DOE^JANE^|||F||||||||||||||||||||||\n" + "PV1||||||||||||||||||||||||||||||||||||||||||||\n" + "ORC|OP||||||||||||||||||||||\n" + // RXO.22.3 purposely empty to check that default system is used
    "RXO|00054418425^Dexamethasone 4 MG Oral Tablet^NDC||||||||||||||||||||6|PC||||||||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    // Confirm that one medicationRequest was created.
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    Quantity rateQuantity = medicationRequest.getDosageInstructionFirstRep().getDoseAndRateFirstRep().getRateQuantity();
    // dosageInstruction.doseAndRate.rateQuantity RXO.21
    // RXO.21
    assertThat(rateQuantity.getValue()).hasToString("6.0");
    // RXO.22.1
    assertThat(rateQuantity.getUnit()).isEqualTo("PC");
    // default
    assertThat(rateQuantity.getSystem()).isEqualTo("http://unitsofmeasure.org");
    // Verify no extraneous resources
    // Expect MedicationRequest, and Patient
    assertThat(e).hasSize(2);
}

Example 63 with Use

use of org.hl7.fhir.r4.model.ExplanationOfBenefit.Use in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method dosageInstructionTestRateQuantityRXE.

@Test
void dosageInstructionTestRateQuantityRXE() {
    // Test dosageInstruction.rateQuantity where RXE.23 exists and RXE.22 does not exist -> use RXE segment, no range
    String hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "ORC|NW|||||E|||||||||||||||||||||||I\n" + "RXE||DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|||||||||||||||||||" + // RXE.24.3 purposely empty to check that default system is used
    "||7|PC^^http://unitsofmeasure.org||||||||||||||||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    // Confirm that one medicationRequest was created.
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    Quantity rateQuantity = medicationRequest.getDosageInstructionFirstRep().getDoseAndRateFirstRep().getRateQuantity();
    // dosageInstruction.doseAndRate.rateQuantity RXE.23
    // RXO.23
    assertThat(rateQuantity.getValue()).hasToString("7.0");
    // RXO.24.1
    assertThat(rateQuantity.getUnit()).isEqualTo("PC");
    // RXO.24.3
    assertThat(rateQuantity.getSystem()).isEqualTo("http://unitsofmeasure.org");
    // Verify no extraneous resources
    // Expect MedicationRequest, and Patient
    assertThat(e).hasSize(2);
}

Example 64 with Use

use of org.hl7.fhir.r4.model.ExplanationOfBenefit.Use in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method dosageInstructionTestDoseQuantityRXO.

@Test
void dosageInstructionTestDoseQuantityRXO() {
    // Test dosageInstruction.DoseQuantity where RXO.2 exists -> use RXO segment, no range
    String hl7message = "MSH|^~\\\\&|||||20210101000000||OMP^O09|MSGID|T|2.6\n" + "PID|||1234||DOE^JANE^|||F||||||||||||||||||||||\n" + "PV1||||||||||||||||||||||||||||||||||||||||||||\n" + "ORC|OP||||||||||||||||||||||\n" + // RXO.5 through RXO.35 not used.
    "RXO|00054418425^Dexamethasone 4 MG Oral Tablet^NDC|100||CC||||||||||||||||||||||||||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    // Confirm that one medicationRequest was created.
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    Quantity doseQuantity = medicationRequest.getDosageInstructionFirstRep().getDoseAndRateFirstRep().getDoseQuantity();
    // dosageInstruction.doseAndRate.doseQuantity RXO.2
    // RXO.2
    assertThat(doseQuantity.getValue()).hasToString("100.0");
    // RXO.4.1
    assertThat(doseQuantity.getUnit()).isEqualTo("CC");
    // default
    assertThat(doseQuantity.getSystem()).isEqualTo("http://unitsofmeasure.org");
    // Verify no extraneous resources
    // Expect MedicationRequest, and Patient
    assertThat(e).hasSize(2);
}

Example 65 with Use

use of org.hl7.fhir.r4.model.ExplanationOfBenefit.Use in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7ImmunizationFHIRConversionTest method testImmunizationUsePATOBJ.

@Test
void testImmunizationUsePATOBJ() throws IOException {
    // Test should only return RXA.10, ORC.12  is empty
    // If RXA.20 is RE but RXA.18 is blank then we use PATOBJ from v3ActReason
    String hl7VUXmessageRep = "MSH|^~\\&|EHR|12345^SiteName|MIIS|99990|20140701041038||VXU^V04^VXU_V04|MSG.Valid_01|P|2.6|||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\r" + "ORC|RE||197027||PA|||||^Clerk^Myron|||||||RI2050\r" + "RXA|||20130531||48^HIB PRP-T^CVX|0.5|ML^^UCUM||||||||||||00^refusal|RE\r" + "OBX|1|CWE|30963-3^ VACCINE FUNDING SOURCE^LN|1|V02^VFC eligible Medicaid/MedicaidManaged Care^HL70064\r";
    Immunization immunization = ResourceUtils.getImmunization(ftv, hl7VUXmessageRep);
    assertThat(immunization.hasReasonCode()).isTrue();
    assertThat(immunization.getReasonCodeFirstRep().getCodingFirstRep().getCode()).isEqualTo("00");
    assertThat(immunization.getReasonCodeFirstRep().getCodingFirstRep().getDisplay()).isEqualTo("refusal");
    assertThat(immunization.getReasonCodeFirstRep().getCodingFirstRep().getSystem()).isNull();
    assertThat(immunization.getReasonCodeFirstRep().getText()).isEqualTo("refusal");
    assertThat(immunization.getStatus().getDisplay()).isEqualTo("not-done");
    assertThat(immunization.hasStatusReason()).isTrue();
    // If RXA.20 is RE but RXA.18 is blank then we use PATOBJ from v3ActReason
    assertThat(immunization.getStatusReason().getCodingFirstRep().getCode()).isEqualTo("PATOBJ");
    assertThat(immunization.getStatusReason().getCodingFirstRep().getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v3-ActReason");
    assertThat(immunization.getStatusReason().getCodingFirstRep().getDisplay()).isEqualTo("Patient Refusal");
    // dose Quantity with a known system
    assertThat(immunization.hasDoseQuantity()).isTrue();
    assertThat(immunization.getDoseQuantity().getValue()).hasToString("0.5");
    assertThat(immunization.getDoseQuantity().getUnit()).isEqualTo("ML");
    assertThat(immunization.getDoseQuantity().getSystem()).isEqualTo("http://unitsofmeasure.org");
    // If OBX.3 is 30963-3 the OBX.5 is for funding source
    DatatypeUtils.checkCommonCodeableConceptAssertions(immunization.getFundingSource(), "V02", "VFC eligible Medicaid/MedicaidManaged Care", "https://phinvads.cdc.gov/vads/ViewCodeSystem.action?id=2.16.840.1.113883.12.64#", "VFC eligible Medicaid/MedicaidManaged Care");
    assertThat(immunization.hasProgramEligibility()).isFalse();
    assertThat(immunization.hasReaction()).isFalse();
}