Examples with Identifier org.hl7.fhir.r4.model.Identifier used on opensource projects

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Example 51 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method serviceRequestIdentifierTest2.

@Test
void serviceRequestIdentifierTest2() {
    // Test 3:
    // - Visit number with PV1-19
    // - filler from OBR
    // - placer from ORC
    String serviceRequest = "MSH|^~\\&|SendTest1|Sendfac1|Receiveapp1|Receivefac1|200603081747|security|PPR^PC1^PPR_PC1|1|P^I|2.6||||||ASCII||\n" + "PID|1||000054321^^^MRN|||||||||||||M|CAT|||||N\n" + "PV1||I|6N^1234^A^GENERAL HOSPITAL2|||||||SUR||||||||S|8846511|A|||||||||||||||||||SF|K||||20170215080000\n" + "PRB|AD|200603150625|aortic stenosis|53692||2||200603150625\n" + "ORC||PON001||||E|^Q6H^D10^^^R\n" + "OBR|1||CD150920001336|||20150930000000|20150930164100|||||||||25055^MARCUSON^PATRICIA^L|||||||||F|||5755^DUNN^CHAD^B~25055^MARCUSON^PATRICIA^L|||WEAKNESS|DAS, SURJYA P||SHIELDS, SHARON A|||||||||";
    ServiceRequest serviceReq = ResourceUtils.getServiceRequest(ftv, serviceRequest);
    // Expect 3 identifiers
    assertThat(serviceReq.hasIdentifier()).isTrue();
    assertThat(serviceReq.getIdentifier()).hasSize(3);
    List<Identifier> identifiers = serviceReq.getIdentifier();
    // Match the id's to position; we can't depend on an order.
    int posVN = getIdentifierPositionByValue("8846511", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    int posFILLER = getIdentifierPositionByValue("CD150920001336", identifiers);
    assertThat(posFILLER).isNotSameAs(-1);
    int posPLACER = getIdentifierPositionByValue("PON001", identifiers);
    assertThat(posPLACER).isNotSameAs(-1);
    // Identifier 1: visit number
    Identifier identifier = serviceReq.getIdentifier().get(posVN);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // PV1.19
    assertThat(value).isEqualTo("8846511");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 2: filler
    identifier = serviceReq.getIdentifier().get(posFILLER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // OBR.3.1
    assertThat(value).isEqualTo("CD150920001336");
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "FILL", "Filler Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 3: placer
    identifier = serviceReq.getIdentifier().get(posPLACER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.2.1
    assertThat(value).isEqualTo("PON001");
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "PLAC", "Placer Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
}
Also used : Identifier(org.hl7.fhir.r4.model.Identifier) ServiceRequest(org.hl7.fhir.r4.model.ServiceRequest) CodeableConcept(org.hl7.fhir.r4.model.CodeableConcept) Test(org.junit.jupiter.api.Test)

Example 52 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method encounterIdentifierTest.

@Test
void encounterIdentifierTest() {
    // Test: Visit number from PV1-19
    String encounterMsg = "MSH|^~\\&|MYEHR2.5|RI88140101|KIDSNET_IFL|RIHEALTH|20130531||VXU^V04^VXU_V04|20130531RI881401010105|P|2.6|||AL|NE|764|ASCII||||||^4086::132:2A57:3C28^IPv6\r" + "EVN|A01|20130617154644||01\r" + "PID|||12345^^^^MR||smith^john|||||||||||||112233\r" + "PV1||I||||||||SUR||||||||S||A\r";
    Encounter encounter = ResourceUtils.getEncounter(ftv, encounterMsg);
    // Expect a single identifier
    assertThat(encounter.hasIdentifier()).isTrue();
    assertThat(encounter.getIdentifier()).hasSize(1);
    // Identifier 1: Visit number
    Identifier identifier = encounter.getIdentifier().get(0);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // PID.18
    assertThat(value).isEqualTo("112233");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    Coding coding = type.getCoding().get(0);
    assertThat(type.getText()).isNull();
    assertThat(coding.getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v2-0203");
    assertThat(coding.getCode()).isEqualTo("VN");
    assertThat(coding.getDisplay()).isEqualTo("Visit number");
}
Also used : Identifier(org.hl7.fhir.r4.model.Identifier) Coding(org.hl7.fhir.r4.model.Coding) Encounter(org.hl7.fhir.r4.model.Encounter) CodeableConcept(org.hl7.fhir.r4.model.CodeableConcept) Test(org.junit.jupiter.api.Test)

Example 53 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method procedureIdentifierTest.

@Test
void procedureIdentifierTest() {
    // with PR1 and PID segments used to create identifiers
    String procedureMsg = "MSH|^~\\&|HL7Soup|Instance1|MCM||200911021022|Security|ADT^A01^ADT_A01|64322|P|2.6|123|456|ER|AL|USA|ASCII|en|2.6|56789^NID^UID|MCM|CDP|^4086::132:2A57:3C28^IPV6|^4086::132:2A57:3C25^IPV6|\n" + "PID|1||000054321^^^MRN|||||||||||||M|CAT|78654^^^ACME||||N\n" + "ROL|5897|UP|AD||20210322133821|20210322133822|10||Hospital|ST||||USA\n" + "PR1|1|ICD10|B45678|Fix break|20210322155008|A|75||V46|80|||32|1|D22|G45|1|G|P98|X|0|0\n";
    Procedure procedure = ResourceUtils.getProcedure(ftv, procedureMsg);
    // Expect 2 identifiers
    assertThat(procedure.hasIdentifier()).isTrue();
    assertThat(procedure.getIdentifier()).hasSize(2);
    List<Identifier> identifiers = procedure.getIdentifier();
    // Match the three id's to position; we can't depend on an order.
    int posExtId = getIdentifierPositionByValue("P98", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    int posACME = getIdentifierPositionByValue("78654", identifiers);
    assertThat(posACME).isNotSameAs(-1);
    // Identifier 1: PR1.19
    Identifier identifier = procedure.getIdentifier().get(posExtId);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // PR1.19.1
    assertThat(value).isEqualTo("P98");
    assertThat(system).isEqualTo("urn:id:extID");
    // Identifier 2: Visit number from PID-18
    identifier = procedure.getIdentifier().get(posACME);
    value = identifier.getValue();
    system = identifier.getSystem();
    // PID.18.1
    assertThat(value).isEqualTo("78654");
    // PID.18.4
    assertThat(system).isEqualTo("urn:id:ACME");
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Test: MSH.7 and PV1.19
    String procedureMSH = "MSH|^~\\&||Instance1|MCM||200911021022|Security|ADT^A01^ADT_A01|64322|P|2.6|123|456|ER|AL|USA|ASCII|en|2.6|56789^NID^UID|MCM|CDP|^4086::132:2A57:3C28^IPV6|^4086::132:2A57:3C25^IPV6|\n" + "PID|1||000054321^^^MRN|||||||||||||M|CAT|||||N\n" + "PV1||I|6N^1234^A^GENERAL HOSPITAL2|||||||SUR||||||||S|8846511|A|||||||||||||||||||SF|K||||20170215080000\n" + "ROL|5897|UP|AD||20210322133821|20210322133822|10||Hospital|ST||||USA\n" + "PR1|1|ICD10|B45678|Fix break|20210322155008|A|75||V46|80|||32|1|D22|G45|1|G||X|0|0\n";
    procedure = ResourceUtils.getProcedure(ftv, procedureMSH);
    // Expect 2 identifiers
    assertThat(procedure.hasIdentifier()).isTrue();
    assertThat(procedure.getIdentifier()).hasSize(2);
    identifiers = procedure.getIdentifier();
    // Match the three id's to position; we can't depend on an order.
    posExtId = getIdentifierPositionByValue("200911021022", identifiers);
    assertThat(posExtId).isNotSameAs(-1);
    int posVN = getIdentifierPositionByValue("8846511", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    // Identifier 1: PR1
    identifier = procedure.getIdentifier().get(posExtId);
    value = identifier.getValue();
    system = identifier.getSystem();
    // MSH.7
    assertThat(value).isEqualTo("200911021022");
    assertThat(system).isEqualTo("urn:id:extID");
    // Identifier 2: Visit number from PV1-19
    identifier = procedure.getIdentifier().get(posVN);
    String valueOBR = identifier.getValue();
    system = identifier.getSystem();
    // PV1.19.1
    assertThat(valueOBR).isEqualTo("8846511");
    // No System PV1.19.2 DNE
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
}
Also used : Identifier(org.hl7.fhir.r4.model.Identifier) Procedure(org.hl7.fhir.r4.model.Procedure) CodeableConcept(org.hl7.fhir.r4.model.CodeableConcept) Test(org.junit.jupiter.api.Test)

Example 54 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7IdentifierFHIRConversionTest method serviceRequestIdentifierTest5.

// NOTE: ORU_RO1 records do not create the ServiceRequest directly.  They create a DiagnosticReport and it creates the ServiceRequest.
// This test makes sure the specification for ORU_RO1.DiagnosticReport is specifying PID and PV1 correctly in AdditionalSegments.
@Test
void serviceRequestIdentifierTest5() {
    // Test 3:
    // - MSH.7 as the visit number
    // - filler from ORC
    // - placer from ORC
    String serviceRequest = "MSH|^~\\&|||||20180924152907|34001|ORU^R01^ORU_R01|213|T|2.6|||||||||||\n" + // PID.18 is empty so MSH.7 with be used as backup identifier visit number
    "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // PV1.19 is empty so MSH.7 with be used as backup identifier visit number
    "PV1|1|E|||||||||||||||||||||||||||||||||||||||||||\n" + // 1. ORC.3 is used as Filler because it has priority over OBR.3
    "ORC|RE|222298|222299|ML18267-C00001^Beaker||||||||||||||||||||||||||||\n" + // 11. OBR.3 ignored as Filler
    "OBR|1|||83036E^HEMOGLOBIN A1C^PACSEAP^^^^^^HEMOGLOBIN A1C|||||||||||||||||||||||||||||||||||||||||||\n";
    ServiceRequest serviceReq = ResourceUtils.getServiceRequest(ftv, serviceRequest);
    // Expect 3 identifiers
    assertThat(serviceReq.hasIdentifier()).isTrue();
    assertThat(serviceReq.getIdentifier()).hasSize(3);
    // Expect 3 identifiers
    assertThat(serviceReq.hasIdentifier()).isTrue();
    assertThat(serviceReq.getIdentifier()).hasSize(3);
    List<Identifier> identifiers = serviceReq.getIdentifier();
    // Match the three id's to position; we can't depend on an order.
    int posVN = getIdentifierPositionByValue("20180924152907", identifiers);
    assertThat(posVN).isNotSameAs(-1);
    int posFILLER = getIdentifierPositionByValue("222299", identifiers);
    assertThat(posFILLER).isNotSameAs(-1);
    int posPLACER = getIdentifierPositionByValue("222298", identifiers);
    assertThat(posPLACER).isNotSameAs(-1);
    // Identifier 1: visit number should be set by MSH.7
    Identifier identifier = serviceReq.getIdentifier().get(posVN);
    String value = identifier.getValue();
    String system = identifier.getSystem();
    // MSH.7
    assertThat(value).isEqualTo("20180924152907");
    assertThat(system).isNull();
    CodeableConcept type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "VN", "Visit number", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 2: filler
    identifier = serviceReq.getIdentifier().get(posFILLER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.3
    assertThat(value).isEqualTo("222299");
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "FILL", "Filler Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
    // Identifier 3: placer
    identifier = serviceReq.getIdentifier().get(posPLACER);
    value = identifier.getValue();
    system = identifier.getSystem();
    // ORC.2
    assertThat(value).isEqualTo("222298");
    assertThat(system).isNull();
    type = identifier.getType();
    DatatypeUtils.checkCommonCodeableConceptAssertions(type, "PLAC", "Placer Identifier", "http://terminology.hl7.org/CodeSystem/v2-0203", null);
}
Also used : Identifier(org.hl7.fhir.r4.model.Identifier) ServiceRequest(org.hl7.fhir.r4.model.ServiceRequest) CodeableConcept(org.hl7.fhir.r4.model.CodeableConcept) Test(org.junit.jupiter.api.Test)

Example 55 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method testMedicationRequestCategoryRequesterAndDispenseRequest.

@Test
void testMedicationRequestCategoryRequesterAndDispenseRequest() {
    String hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + // ORC.29 to category
    "ORC|NW|||||||||||3122^PROVIDER^ORDERING^^^DR|||20190606193536||||||||||||||I\n" + // RXE.13 empty so ORC.12 takes priority
    "RXE|^Q24H&0600^^20210330144208^^ROU|DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|3||mL|47||||||||||||||||||||||||||||||||||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    // requester comes from ORC.12 which is the back up value for RXE.13
    String requesterRef = medicationRequest.getRequester().getReference();
    Practitioner practBundle = ResourceUtils.getSpecificPractitionerFromBundleEntriesList(e, requesterRef);
    Identifier practitionerIdentifier = practBundle.getIdentifierFirstRep();
    HumanName practName = practBundle.getNameFirstRep();
    // ORC.12.1
    assertThat(practitionerIdentifier.getValue()).isEqualTo("3122");
    // ORC.12.9
    assertThat(practitionerIdentifier.getSystem()).isNull();
    // ORC.12.2
    assertThat(practName.getFamily()).isEqualTo("PROVIDER");
    // ORC.12.3
    assertThat(practName.getGivenAsSingleString()).isEqualTo("ORDERING");
    // ORC.12.6
    assertThat(practName.getPrefixAsSingleString()).isEqualTo("DR");
    // ORC.12.5
    assertThat(practName.getSuffix()).isEmpty();
    // ORC.12
    assertThat(practName.getText()).isEqualTo("DR ORDERING PROVIDER");
    // category comes from  ORC.29
    assertThat(medicationRequest.getCategory()).hasSize(1);
    DatatypeUtils.checkCommonCodeableConceptAssertions(medicationRequest.getCategory().get(0), "inpatient", "Inpatient", "http://terminology.hl7.org/CodeSystem/medicationrequest-category", null);
    // DispenseRequest.start comes from ORC.15
    assertThat(medicationRequest.getDispenseRequest().hasValidityPeriod()).isTrue();
    assertThat(medicationRequest.getDispenseRequest().getValidityPeriod().getStartElement().toString()).containsPattern("2019-06-06");
}
Also used : Practitioner(org.hl7.fhir.r4.model.Practitioner) HumanName(org.hl7.fhir.r4.model.HumanName) MedicationRequest(org.hl7.fhir.r4.model.MedicationRequest) BundleEntryComponent(org.hl7.fhir.r4.model.Bundle.BundleEntryComponent) Identifier(org.hl7.fhir.r4.model.Identifier) Resource(org.hl7.fhir.r4.model.Resource) Test(org.junit.jupiter.api.Test) ParameterizedTest(org.junit.jupiter.params.ParameterizedTest)

Aggregations

Identifier (org.hl7.fhir.r4.model.Identifier)212 Complex (org.hl7.fhir.r4.utils.formats.Turtle.Complex)143 Complex (org.hl7.fhir.dstu3.utils.formats.Turtle.Complex)125 Complex (org.hl7.fhir.dstu2016may.formats.RdfGenerator.Complex)116 Test (org.junit.Test)109 Test (org.junit.jupiter.api.Test)84 ArrayList (java.util.ArrayList)67 CodeableConcept (org.hl7.fhir.r4.model.CodeableConcept)66 Reference (org.hl7.fhir.r4.model.Reference)57 Identifier (org.hl7.fhir.dstu3.model.Identifier)55 Patient (org.hl7.fhir.r4.model.Patient)55 Coding (org.hl7.fhir.r4.model.Coding)49 List (java.util.List)47 IBaseResource (org.hl7.fhir.instance.model.api.IBaseResource)41 Practitioner (org.hl7.fhir.r4.model.Practitioner)41 Date (java.util.Date)40 Collectors (java.util.stream.Collectors)38 Resource (org.hl7.fhir.r4.model.Resource)37 BundleEntryComponent (org.hl7.fhir.r4.model.Bundle.BundleEntryComponent)36 InvalidRequestException (ca.uhn.fhir.rest.server.exceptions.InvalidRequestException)34
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