Examples with Identifier org.hl7.fhir.r4.model.Identifier used on opensource projects

Example 96 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project summary-care-record-api by NHSDigital.

the class GpSummaryMapper method map.

@SneakyThrows
public List<Resource> map(Node document) {
    var gpSummaryId = xmlUtils.getValueByXPath(document, GP_SUMMARY_ID_XPATH);
    var gpSummaryCodeCode = xmlUtils.getValueByXPath(document, GP_SUMMARY_CODE_CODE_XPATH);
    var gpSummaryCodeDisplayName = xmlUtils.getValueByXPath(document, GP_SUMMARY_CODE_DISPLAY_NAME_XPATH);
    var gpSummaryStatusCode = xmlUtils.getValueByXPath(document, GP_SUMMARY_STATUS_CODE_XPATH);
    var gpSummaryEffectiveTime = parseDate(xmlUtils.getValueByXPath(document, GP_SUMMARY_EFFECTIVE_TIME_XPATH), InstantType.class);
    var authorTime = parseDate(xmlUtils.getValueByXPath(document, GP_SUMMARY_AUTHOR_TIME_XPATH), DateTimeType.class);
    var replacementOfPriorMessageRefIdRoot = xmlUtils.getOptionalValueByXPath(document, REPLACEMENT_OF_PRIOR_MESSAGE_REF_ID_ROOT_XPATH);
    var pertinentRootCreTypeCodeCode = xmlUtils.getValueByXPath(document, PERTINENT_ROOT_CRE_TYPE_CODE_CODE_XPATH);
    var pertinentRootCreTypeCodeDisplayName = xmlUtils.getValueByXPath(document, PERTINENT_ROOT_CRE_TYPE_CODE_DISPLAY_NAME_XPATH);
    var presentationTextValue = xmlUtils.detachOptionalNodeByXPath(document, PRESENTATION_TEXT_VALUE);
    var eventId = xmlUtils.getValueByXPath(document, EVENT_ID_XPATH);
    List<Resource> resources = new ArrayList<>();
    var composition = new Composition();
    composition.setId(eventId);
    composition.setIdentifier(new Identifier().setValue(gpSummaryId).setSystem("https://tools.ietf.org/html/rfc4122"));
    composition.setType(new CodeableConcept().addCoding(new Coding().setCode(gpSummaryCodeCode).setSystem(SNOMED_SYSTEM).setDisplay(gpSummaryCodeDisplayName)));
    composition.setMeta(new Meta().setLastUpdatedElement(gpSummaryEffectiveTime));
    composition.setStatus(mapCompositionStatus(gpSummaryStatusCode));
    composition.setDateElement(authorTime);
    replacementOfPriorMessageRefIdRoot.ifPresent(val -> composition.addRelatesTo(new Composition.CompositionRelatesToComponent().setTarget(new Identifier().setValue(val)).setCode(REPLACES)));
    composition.addCategory(new CodeableConcept().addCoding(new Coding().setCode(pertinentRootCreTypeCodeCode).setSystem(SNOMED_SYSTEM).setDisplay(pertinentRootCreTypeCodeDisplayName)));
    Map<String, List<String>> references = sectionReferences(document);
    presentationTextValue.map(htmlParser::parse).map(Collection::stream).ifPresent(it -> it.forEach(section -> {
        if (section.getTitle() != null && CODED_ENTRY_RESOURCE_MAP.keySet().contains(section.getTitle()) && references.containsKey(section.getTitle())) {
            for (String codedEntryId : references.get(section.getTitle())) {
                section.addEntry(new Reference(CODED_ENTRY_RESOURCE_MAP.get(section.getTitle()) + "/" + codedEntryId));
            }
        }
        composition.addSection(section);
    }));
    resources.add(composition);
    addAuthor(document, resources, composition);
    return resources;
}

Example 97 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project summary-care-record-api by NHSDigital.

the class GetScrService method buildPatientResource.

private Patient buildPatientResource(String nhsNumber) {
    Patient patient = new Patient();
    String patientResourceId = randomUUID();
    patient.setId(patientResourceId);
    patient.setIdentifier(asList(new Identifier().setSystem(NHS_ID_SYSTEM).setValue(nhsNumber)));
    return patient;
}

Example 98 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project summary-care-record-api by NHSDigital.

the class OrganisationSdsMapper method mapOrganizationSds.

public Organization mapOrganizationSds(Node organisationSds) {
    var org = new Organization();
    org.setId(randomUUID());
    var orgIdentifier = new Identifier().setValue(xmlUtils.getValueByXPath(organisationSds, ORG_SDS_ID_XPATH));
    var rootId = xmlUtils.getValueByXPath(organisationSds, ORG_SDS_ID_ROOT_XPATH);
    if (HL7_ORG_OID.equals(rootId)) {
        orgIdentifier.setSystem(ORG_SDS_SYSTEM);
    }
    org.addIdentifier(orgIdentifier);
    xmlUtils.detachOptionalNodeByXPath(organisationSds, ORG_NAME_XPATH).ifPresent(nameNode -> org.setName(nameNode.getTextContent()));
    return org;
}

Example 99 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project summary-care-record-api by NHSDigital.

the class PersonSdsMapper method mapPractitioner.

public Practitioner mapPractitioner(Node personSds) {
    var practitioner = new Practitioner();
    practitioner.setId(randomUUID());
    practitioner.addIdentifier(new Identifier().setSystem(SDS_USER_ID).setValue(xmlUtils.getValueByXPath(personSds, ID_EXTENSION_XPATH)));
    var name = xmlUtils.getOptionalValueByXPath(personSds, PERSON_NAME_XPATH);
    if (name.isPresent()) {
        practitioner.addName(new HumanName().setText(name.get()));
    }
    return practitioner;
}

Example 100 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project openmrs-module-fhir2 by openmrs.

the class FhirPractitionerServiceImplTest method shouldSearchForPractitionersByIdentifier.

@Test
public void shouldSearchForPractitionersByIdentifier() {
    TokenAndListParam identifier = new TokenAndListParam().addAnd(new TokenOrListParam().add(IDENTIFIER));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.IDENTIFIER_SEARCH_HANDLER, identifier);
    when(practitionerDao.getSearchResultUuids(any())).thenReturn(Collections.singletonList(UUID));
    when(practitionerDao.getSearchResults(any(), any())).thenReturn(Collections.singletonList(provider));
    when(searchQuery.getQueryResults(any(), any(), any(), any())).thenReturn(new SearchQueryBundleProvider<>(theParams, practitionerDao, practitionerTranslator, globalPropertyService, searchQueryInclude));
    when(searchQueryInclude.getIncludedResources(any(), any())).thenReturn(Collections.emptySet());
    when(practitionerTranslator.toFhirResource(provider)).thenReturn(practitioner);
    when(userService.searchForUsers(any())).thenReturn(new SimpleBundleProvider());
    IBundleProvider results = practitionerService.searchForPractitioners(identifier, null, null, null, null, null, null, null, null, null, null);
    List<IBaseResource> resultList = get(results);
    assertThat(results, notNullValue());
    assertThat(resultList, not(empty()));
    assertThat(resultList, hasSize(greaterThanOrEqualTo(1)));
}