Examples with PractitionerRole org.hl7.fhir.r4.model.PractitionerRole used on opensource projects

Example 1 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project gpconnect-demonstrator by nhsconnect.

the class PatientResourceProvider method StructuredRecordOperation.

@Operation(name = GET_STRUCTURED_RECORD_OPERATION_NAME)
public Bundle StructuredRecordOperation(@ResourceParam Parameters params) throws FHIRException {
    Bundle structuredBundle = new Bundle();
    Boolean getAllergies = false;
    Boolean includeResolved = false;
    Boolean getMedications = false;
    Boolean includePrescriptionIssues = false;
    Period medicationPeriod = null;
    String NHS = getNhsNumber(params);
    PatientDetails patientDetails = patientSearch.findPatient(NHS);
    // see https://nhsconnect.github.io/gpconnect/accessrecord_structured_development_retrieve_patient_record.html#error-handling
    if (patientDetails == null || patientDetails.isSensitive() || patientDetails.isDeceased() || !patientDetails.isActive()) {
        throw OperationOutcomeFactory.buildOperationOutcomeException(new ResourceNotFoundException("No patient details found for patient ID: " + NHS), SystemCode.PATIENT_NOT_FOUND, IssueType.NOTFOUND);
    }
    if (NHS.equals(patientNoconsent)) {
        throw OperationOutcomeFactory.buildOperationOutcomeException(new ForbiddenOperationException("No patient consent to share for patient ID: " + NHS), SystemCode.NO_PATIENT_CONSENT, IssueType.FORBIDDEN);
    }
    operationOutcome = null;
    for (ParametersParameterComponent param : params.getParameter()) {
        if (validateParametersName(param.getName())) {
            if (param.getName().equals(SystemConstants.INCLUDE_ALLERGIES)) {
                getAllergies = true;
                if (param.getPart().isEmpty()) {
                    // addWarningIssue(param, IssueType.REQUIRED, "Miss parameter part : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES);
                    throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                }
                boolean includeResolvedParameterPartPresent = false;
                for (ParametersParameterComponent paramPart : param.getPart()) {
                    if (paramPart.getName().equals(SystemConstants.INCLUDE_RESOLVED_ALLERGIES)) {
                        if (paramPart.getValue() instanceof BooleanType) {
                            includeResolved = Boolean.valueOf(paramPart.getValue().primitiveValue());
                            includeResolvedParameterPartPresent = true;
                        } else {
                            throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                        }
                    } else {
                        addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
                    // throw OperationOutcomeFactory.buildOperationOutcomeException(
                    // new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
                    // SystemCode.INVALID_PARAMETER, IssueType.INVALID);
                    }
                }
                if (!includeResolvedParameterPartPresent) {
                    throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                }
            }
            if (param.getName().equals(SystemConstants.INCLUDE_MEDICATION)) {
                getMedications = true;
                boolean isIncludedPrescriptionIssuesExist = false;
                for (ParametersParameterComponent paramPart : param.getPart()) {
                    if (paramPart.getName().equals(SystemConstants.INCLUDE_PRESCRIPTION_ISSUES)) {
                        if (paramPart.getValue() instanceof BooleanType) {
                            includePrescriptionIssues = Boolean.valueOf(paramPart.getValue().primitiveValue());
                            isIncludedPrescriptionIssuesExist = true;
                        }
                    } else if (paramPart.getName().equals(SystemConstants.MEDICATION_SEARCH_FROM_DATE) && paramPart.getValue() instanceof DateType) {
                        DateType startDateDt = (DateType) paramPart.getValue();
                        medicationPeriod = new Period();
                        medicationPeriod.setStart(startDateDt.getValue());
                        medicationPeriod.setEnd(null);
                        String startDate = startDateDt.asStringValue();
                        if (!validateStartDateParamAndEndDateParam(startDate, null)) {
                        // addWarningIssue(param, paramPart, IssueType.INVALID, "Invalid date used");
                        }
                    } else {
                        addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
                    // throw OperationOutcomeFactory.buildOperationOutcomeException(
                    // new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
                    // SystemCode.INVALID_PARAMETER, IssueType.INVALID);
                    }
                }
                if (!isIncludedPrescriptionIssuesExist) {
                    // # 1.2.6 now defaults to true if not provided
                    includePrescriptionIssues = true;
                }
            }
        } else {
            // invalid parameter
            addWarningIssue(param, IssueType.NOTSUPPORTED);
        }
    }
    // for parameter
    // Add Patient
    Patient patient = patientDetailsToPatientResourceConverter(patientDetails);
    if (patient.getIdentifierFirstRep().getValue().equals(NHS)) {
        structuredBundle.addEntry().setResource(patient);
    }
    // Organization from patient
    Set<String> orgIds = new HashSet<>();
    orgIds.add(patientDetails.getManagingOrganization());
    // Practitioner from patient
    Set<String> practitionerIds = new HashSet<>();
    List<Reference> practitionerReferenceList = patient.getGeneralPractitioner();
    practitionerReferenceList.forEach(practitionerReference -> {
        String[] pracRef = practitionerReference.getReference().split("/");
        if (pracRef.length > 1) {
            practitionerIds.add(pracRef[1]);
        }
    });
    if (getAllergies) {
        structuredBundle = structuredAllergyIntoleranceBuilder.buildStructuredAllergyIntolerence(NHS, practitionerIds, structuredBundle, includeResolved);
    }
    if (getMedications) {
        structuredBundle = populateMedicationBundle.addMedicationBundleEntries(structuredBundle, patientDetails, includePrescriptionIssues, medicationPeriod, practitionerIds, orgIds);
    }
    // Add all practitioners and practitioner roles
    for (String practitionerId : practitionerIds) {
        Practitioner pracResource = practitionerResourceProvider.getPractitionerById(new IdType(practitionerId));
        structuredBundle.addEntry().setResource(pracResource);
        List<PractitionerRole> practitionerRoleList = practitionerRoleResourceProvider.getPractitionerRoleByPracticionerId(new IdType(practitionerId));
        for (PractitionerRole role : practitionerRoleList) {
            String[] split = role.getOrganization().getReference().split("/");
            orgIds.add(split[1]);
            structuredBundle.addEntry().setResource(role);
        }
    }
    // Add all organizations
    for (String orgId : orgIds) {
        OrganizationDetails organizationDetails = organizationSearch.findOrganizationDetails(new Long(orgId));
        Organization organization = organizationResourceProvider.convertOrganizationDetailsToOrganization(organizationDetails);
        structuredBundle.addEntry().setResource(organization);
    }
    structuredBundle.setType(BundleType.COLLECTION);
    structuredBundle.getMeta().addProfile(SystemURL.SD_GPC_STRUCTURED_BUNDLE);
    if (operationOutcome != null) {
        structuredBundle.addEntry().setResource(operationOutcome);
    } else {
        removeDuplicateResources(structuredBundle);
    }
    return structuredBundle;
}

Example 2 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project synthea by synthetichealth.

the class FhirR4 method practitioner.

/**
 * Map the clinician into a FHIR Practitioner resource, and add it to the given Bundle.
 * @param rand   Source of randomness to use when generating ids etc
 * @param bundle The Bundle to add to
 * @param clinician The clinician
 * @return The added Entry
 */
protected static BundleEntryComponent practitioner(RandomNumberGenerator rand, Bundle bundle, Clinician clinician) {
    Practitioner practitionerResource = new Practitioner();
    if (USE_US_CORE_IG) {
        Meta meta = new Meta();
        meta.addProfile("http://hl7.org/fhir/us/core/StructureDefinition/us-core-practitioner");
        practitionerResource.setMeta(meta);
    }
    practitionerResource.addIdentifier().setSystem("http://hl7.org/fhir/sid/us-npi").setValue(clinician.npi);
    practitionerResource.setActive(true);
    practitionerResource.addName().setFamily((String) clinician.attributes.get(Clinician.LAST_NAME)).addGiven((String) clinician.attributes.get(Clinician.FIRST_NAME)).addPrefix((String) clinician.attributes.get(Clinician.NAME_PREFIX));
    String email = (String) clinician.attributes.get(Clinician.FIRST_NAME) + "." + (String) clinician.attributes.get(Clinician.LAST_NAME) + "@example.com";
    practitionerResource.addTelecom().setSystem(ContactPointSystem.EMAIL).setUse(ContactPointUse.WORK).setValue(email);
    if (USE_US_CORE_IG) {
        practitionerResource.getTelecomFirstRep().addExtension().setUrl("http://hl7.org/fhir/us/core/StructureDefinition/us-core-direct").setValue(new BooleanType(true));
    }
    Address address = new Address().addLine((String) clinician.attributes.get(Clinician.ADDRESS)).setCity((String) clinician.attributes.get(Clinician.CITY)).setPostalCode((String) clinician.attributes.get(Clinician.ZIP)).setState((String) clinician.attributes.get(Clinician.STATE));
    if (COUNTRY_CODE != null) {
        address.setCountry(COUNTRY_CODE);
    }
    practitionerResource.addAddress(address);
    if (clinician.attributes.get(Person.GENDER).equals("M")) {
        practitionerResource.setGender(AdministrativeGender.MALE);
    } else if (clinician.attributes.get(Person.GENDER).equals("F")) {
        practitionerResource.setGender(AdministrativeGender.FEMALE);
    }
    BundleEntryComponent practitionerEntry = newEntry(bundle, practitionerResource, clinician.getResourceID());
    if (USE_US_CORE_IG) {
        // generate an accompanying PractitionerRole resource
        PractitionerRole practitionerRole = new PractitionerRole();
        Meta meta = new Meta();
        meta.addProfile("http://hl7.org/fhir/us/core/StructureDefinition/us-core-practitionerrole");
        practitionerRole.setMeta(meta);
        practitionerRole.setPractitioner(new Reference().setIdentifier(new Identifier().setSystem("http://hl7.org/fhir/sid/us-npi").setValue(clinician.npi)).setDisplay(practitionerResource.getNameFirstRep().getNameAsSingleString()));
        practitionerRole.setOrganization(new Reference().setIdentifier(new Identifier().setSystem(SYNTHEA_IDENTIFIER).setValue(clinician.getOrganization().getResourceID())).setDisplay(clinician.getOrganization().name));
        practitionerRole.addCode(mapCodeToCodeableConcept(new Code("http://nucc.org/provider-taxonomy", "208D00000X", "General Practice"), null));
        practitionerRole.addSpecialty(mapCodeToCodeableConcept(new Code("http://nucc.org/provider-taxonomy", "208D00000X", "General Practice"), null));
        practitionerRole.addLocation().setIdentifier(new Identifier().setSystem(SYNTHEA_IDENTIFIER).setValue(clinician.getOrganization().getResourceLocationID())).setDisplay(clinician.getOrganization().name);
        if (clinician.getOrganization().phone != null && !clinician.getOrganization().phone.isEmpty()) {
            practitionerRole.addTelecom(new ContactPoint().setSystem(ContactPointSystem.PHONE).setValue(clinician.getOrganization().phone));
        }
        practitionerRole.addTelecom(practitionerResource.getTelecomFirstRep());
        newEntry(rand, bundle, practitionerRole);
    }
    return practitionerEntry;
}

Example 3 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project MobileAccessGateway by i4mi.

the class Iti65RequestConverter method processDocumentManifest.

/**
 * ITI-65: process DocumentManifest resource from Bundle
 * @param manifest
 * @param submissionSet
 */
private void processDocumentManifest(DocumentManifest manifest, SubmissionSet submissionSet) {
    // masterIdentifier	SubmissionSet.uniqueId
    Identifier masterIdentifier = manifest.getMasterIdentifier();
    submissionSet.setUniqueId(noPrefix(masterIdentifier.getValue()));
    submissionSet.assignEntryUuid();
    manifest.setId(submissionSet.getEntryUuid());
    CodeableConcept type = manifest.getType();
    submissionSet.setContentTypeCode(transformCodeableConcept(type));
    DateTimeType created = manifest.getCreatedElement();
    submissionSet.setSubmissionTime(timestampFromDate(created));
    // subject	SubmissionSet.patientId
    Reference ref = manifest.getSubject();
    submissionSet.setPatientId(transformReferenceToIdentifiable(ref, manifest));
    // Author
    Extension authorRoleExt = manifest.getExtensionByUrl("http://fhir.ch/ig/ch-epr-mhealth/StructureDefinition/ch-ext-author-authorrole");
    if (manifest.hasAuthor() || (authorRoleExt != null)) {
        Identifiable identifiable = null;
        Reference author = manifest.getAuthorFirstRep();
        if (authorRoleExt != null) {
            Coding coding = authorRoleExt.castToCoding(authorRoleExt.getValue());
            if (coding != null) {
                identifiable = new Identifiable(coding.getCode(), new AssigningAuthority(noPrefix(coding.getSystem())));
            }
        }
        submissionSet.setAuthor(transformAuthor(author, manifest.getContained(), identifiable));
    }
    // recipient	SubmissionSet.intendedRecipient
    for (Reference recipientRef : manifest.getRecipient()) {
        Resource res = findResource(recipientRef, manifest.getContained());
        if (res instanceof Practitioner) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Practitioner) res));
            recipient.setTelecom(transform(((Practitioner) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Organization) {
            Recipient recipient = new Recipient();
            recipient.setOrganization(transform((Organization) res));
            recipient.setTelecom(transform(((Organization) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof PractitionerRole) {
            Recipient recipient = new Recipient();
            PractitionerRole role = (PractitionerRole) res;
            recipient.setOrganization(transform((Organization) findResource(role.getOrganization(), manifest.getContained())));
            recipient.setPerson(transform((Practitioner) findResource(role.getPractitioner(), manifest.getContained())));
            recipient.setTelecom(transform(role.getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Patient) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Patient) res));
            recipient.setTelecom(transform(((Patient) res).getTelecomFirstRep()));
        } else if (res instanceof RelatedPerson) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((RelatedPerson) res));
            recipient.setTelecom(transform(((RelatedPerson) res).getTelecomFirstRep()));
        }
    }
    // source	SubmissionSet.sourceId
    String source = noPrefix(manifest.getSource());
    submissionSet.setSourceId(source);
    String description = manifest.getDescription();
    if (description != null)
        submissionSet.setTitle(localizedString(description));
}

Example 4 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project MobileAccessGateway by i4mi.

the class Iti67ResponseConverter method translateToFhir.

@Override
public List<DocumentReference> translateToFhir(QueryResponse input, Map<String, Object> parameters) {
    ArrayList<DocumentReference> list = new ArrayList<DocumentReference>();
    if (input != null && Status.SUCCESS.equals(input.getStatus())) {
        // process relationship association
        Map<String, List<DocumentReferenceRelatesToComponent>> relatesToMapping = new HashMap<String, List<DocumentReferenceRelatesToComponent>>();
        for (Association association : input.getAssociations()) {
            // Relationship type -> relatesTo.code code [1..1]
            // relationship reference -> relatesTo.target Reference(DocumentReference)
            String source = association.getSourceUuid();
            String target = association.getTargetUuid();
            AssociationType type = association.getAssociationType();
            DocumentReferenceRelatesToComponent relatesTo = new DocumentReferenceRelatesToComponent();
            if (type != null)
                switch(type) {
                    case APPEND:
                        relatesTo.setCode(DocumentRelationshipType.APPENDS);
                        break;
                    case REPLACE:
                        relatesTo.setCode(DocumentRelationshipType.REPLACES);
                        break;
                    case TRANSFORM:
                        relatesTo.setCode(DocumentRelationshipType.TRANSFORMS);
                        break;
                    case SIGNS:
                        relatesTo.setCode(DocumentRelationshipType.SIGNS);
                        break;
                }
            relatesTo.setTarget(new Reference().setReference("urn:oid:" + target));
            if (!relatesToMapping.containsKey(source))
                relatesToMapping.put(source, new ArrayList<DocumentReferenceRelatesToComponent>());
            relatesToMapping.get(source).add(relatesTo);
        }
        if (input.getDocumentEntries() != null) {
            for (DocumentEntry documentEntry : input.getDocumentEntries()) {
                DocumentReference documentReference = new DocumentReference();
                // FIXME do we need to cache this id in
                documentReference.setId(noUuidPrefix(documentEntry.getEntryUuid()));
                // relation to the DocumentManifest itself
                // for
                list.add(documentReference);
                // limitedMetadata -> meta.profile canonical [0..*]
                if (documentEntry.isLimitedMetadata()) {
                    documentReference.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE_MHD_Query_Comprehensive_DocumentReference");
                } else {
                    documentReference.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE_MHD_Comprehensive_DocumentManifest");
                }
                // uniqueId -> masterIdentifier Identifier [0..1] [1..1]
                if (documentEntry.getUniqueId() != null) {
                    documentReference.setMasterIdentifier((new Identifier().setValue("urn:oid:" + documentEntry.getUniqueId())));
                }
                // DocumentReference.identifier. use shall be ‘official’
                if (documentEntry.getEntryUuid() != null) {
                    documentReference.addIdentifier((new Identifier().setSystem("urn:ietf:rfc:3986").setValue(asUuid(documentEntry.getEntryUuid()))).setUse(IdentifierUse.OFFICIAL));
                }
                // Other status values are allowed but are not defined in this mapping to XDS.
                if (AvailabilityStatus.APPROVED.equals(documentEntry.getAvailabilityStatus())) {
                    documentReference.setStatus(DocumentReferenceStatus.CURRENT);
                }
                if (AvailabilityStatus.DEPRECATED.equals(documentEntry.getAvailabilityStatus())) {
                    documentReference.setStatus(DocumentReferenceStatus.SUPERSEDED);
                }
                // contentTypeCode -> type CodeableConcept [0..1]
                if (documentEntry.getTypeCode() != null) {
                    documentReference.setType(transform(documentEntry.getTypeCode()));
                }
                // classCode -> category CodeableConcept [0..*]
                if (documentEntry.getClassCode() != null) {
                    documentReference.addCategory((transform(documentEntry.getClassCode())));
                }
                // representing the XDS Affinity Domain Patient.
                if (documentEntry.getPatientId() != null) {
                    Identifiable patient = documentEntry.getPatientId();
                    documentReference.setSubject(transformPatient(patient));
                }
                // creationTime -> date instant [0..1]
                if (documentEntry.getCreationTime() != null) {
                    documentReference.setDate(Date.from(documentEntry.getCreationTime().getDateTime().toInstant()));
                }
                // PractitionerRole| Organization| Device| Patient| RelatedPerson) [0..*]
                if (documentEntry.getAuthors() != null) {
                    for (Author author : documentEntry.getAuthors()) {
                        documentReference.addAuthor(transformAuthor(author));
                    }
                }
                // legalAuthenticator -> authenticator Note 1
                // Reference(Practitioner|Practition erRole|Organization [0..1]
                Person person = documentEntry.getLegalAuthenticator();
                if (person != null) {
                    Practitioner practitioner = transformPractitioner(person);
                    documentReference.setAuthenticator((Reference) new Reference().setResource(practitioner));
                }
                // Relationship Association -> relatesTo [0..*]
                // [1..1]
                documentReference.setRelatesTo(relatesToMapping.get(documentEntry.getEntryUuid()));
                // title -> description string [0..1]
                if (documentEntry.getTitle() != null) {
                    documentReference.setDescription(documentEntry.getTitle().getValue());
                }
                // DocumentReference itself.
                if (documentEntry.getConfidentialityCodes() != null) {
                    documentReference.addSecurityLabel(transform(documentEntry.getConfidentialityCodes()));
                }
                DocumentReferenceContentComponent content = documentReference.addContent();
                Attachment attachment = new Attachment();
                content.setAttachment(attachment);
                // mimeType -> content.attachment.contentType [1..1] code [0..1]
                if (documentEntry.getMimeType() != null) {
                    attachment.setContentType(documentEntry.getMimeType());
                }
                // languageCode -> content.attachment.language code [0..1]
                if (documentEntry.getLanguageCode() != null) {
                    attachment.setLanguage(documentEntry.getLanguageCode());
                }
                // retrievable location of the document -> content.attachment.url uri
                // [0..1] [1..1
                // has to defined, for the PoC we define
                // $host:port/camel/$repositoryid/$uniqueid
                attachment.setUrl(config.getUriMagXdsRetrieve() + "?uniqueId=" + documentEntry.getUniqueId() + "&repositoryUniqueId=" + documentEntry.getRepositoryUniqueId());
                // size -> content.attachment.size integer [0..1] The size is calculated
                if (documentEntry.getSize() != null) {
                    attachment.setSize(documentEntry.getSize().intValue());
                }
                // on the data prior to base64 encoding, if the data is base64 encoded.
                if (documentEntry.getHash() != null) {
                    attachment.setHash(Hex.fromHex(documentEntry.getHash()));
                }
                // comments -> content.attachment.title string [0..1]
                if (documentEntry.getComments() != null) {
                    attachment.setTitle(documentEntry.getComments().getValue());
                }
                // TcreationTime -> content.attachment.creation dateTime [0..1]
                if (documentEntry.getCreationTime() != null) {
                    attachment.setCreation(Date.from(documentEntry.getCreationTime().getDateTime().toInstant()));
                }
                // formatCode -> content.format Coding [0..1]
                if (documentEntry.getFormatCode() != null) {
                    content.setFormat(transform(documentEntry.getFormatCode()).getCodingFirstRep());
                }
                DocumentReferenceContextComponent context = new DocumentReferenceContextComponent();
                documentReference.setContext(context);
                // referenceIdList -> context.encounter Reference(Encounter) [0..*] When
                // referenceIdList contains an encounter, and a FHIR Encounter is available, it
                // may be referenced.
                // Map to context.related
                List<ReferenceId> refIds = documentEntry.getReferenceIdList();
                if (refIds != null) {
                    for (ReferenceId refId : refIds) {
                        context.getRelated().add(transform(refId));
                    }
                }
                // eventCodeList -> context.event CodeableConcept [0..*]
                if (documentEntry.getEventCodeList() != null) {
                    documentReference.getContext().setEvent(transformMultiple(documentEntry.getEventCodeList()));
                }
                // serviceStartTime serviceStopTime -> context.period Period [0..1]
                if (documentEntry.getServiceStartTime() != null || documentEntry.getServiceStopTime() != null) {
                    Period period = new Period();
                    period.setStartElement(transform(documentEntry.getServiceStartTime()));
                    period.setEndElement(transform(documentEntry.getServiceStopTime()));
                    documentReference.getContext().setPeriod(period);
                }
                // [0..1]
                if (documentEntry.getHealthcareFacilityTypeCode() != null) {
                    context.setFacilityType(transform(documentEntry.getHealthcareFacilityTypeCode()));
                }
                // practiceSettingCode -> context.practiceSetting CodeableConcept [0..1]
                if (documentEntry.getPracticeSettingCode() != null) {
                    context.setPracticeSetting(transform(documentEntry.getPracticeSettingCode()));
                }
                // sourcePatientId and sourcePatientInfo -> context.sourcePatientInfo
                // Reference(Patient) [0..1] Contained Patient Resource with
                // Patient.identifier.use element set to ‘usual’.
                Identifiable sourcePatientId = documentEntry.getSourcePatientId();
                PatientInfo sourcePatientInfo = documentEntry.getSourcePatientInfo();
                Patient sourcePatient = new Patient();
                if (sourcePatientId != null) {
                    sourcePatient.addIdentifier((new Identifier().setSystem("urn:oid:" + sourcePatientId.getAssigningAuthority().getUniversalId()).setValue(sourcePatientId.getId())).setUse(IdentifierUse.OFFICIAL));
                }
                if (sourcePatientInfo != null) {
                    sourcePatient.setBirthDateElement(transformToDate(sourcePatientInfo.getDateOfBirth()));
                    String gender = sourcePatientInfo.getGender();
                    if (gender != null) {
                        switch(gender) {
                            case "F":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.FEMALE);
                                break;
                            case "M":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.MALE);
                                break;
                            case "U":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.UNKNOWN);
                                break;
                            case "A":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.OTHER);
                                break;
                        }
                    }
                    ListIterator<Name> names = sourcePatientInfo.getNames();
                    while (names.hasNext()) {
                        Name name = names.next();
                        sourcePatient.addName(transform(name));
                    }
                    ListIterator<Address> addresses = sourcePatientInfo.getAddresses();
                    while (addresses.hasNext()) {
                        Address address = addresses.next();
                        if (address != null)
                            sourcePatient.addAddress(transform(address));
                    }
                }
                if (sourcePatientId != null || sourcePatientInfo != null) {
                    context.getSourcePatientInfo().setResource(sourcePatient);
                }
            }
        }
    } else {
        processError(input);
    }
    return list;
}

Example 5 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project MobileAccessGateway by i4mi.

the class Iti65RequestConverter method processDocumentManifest.

/**
 * ITI-65: process ListResource resource from Bundle
 * @param manifest
 * @param submissionSet
 */
private void processDocumentManifest(ListResource manifest, SubmissionSet submissionSet) {
    for (Identifier id : manifest.getIdentifier()) {
        if (id.getUse() == null || id.getUse().equals(Identifier.IdentifierUse.OFFICIAL)) {
        } else if (id.getUse().equals(Identifier.IdentifierUse.USUAL)) {
            String uniqueId = noPrefix(id.getValue());
            submissionSet.setUniqueId(uniqueId);
        }
    }
    submissionSet.assignEntryUuid();
    manifest.setId(submissionSet.getEntryUuid());
    Extension designationType = manifest.getExtensionByUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-designationType");
    if (designationType != null && designationType.getValue() instanceof CodeableConcept) {
        submissionSet.setContentTypeCode(transformCodeableConcept((CodeableConcept) designationType.getValue()));
    }
    DateTimeType created = manifest.getDateElement();
    submissionSet.setSubmissionTime(timestampFromDate(created));
    // subject	SubmissionSet.patientId
    Reference ref = manifest.getSubject();
    submissionSet.setPatientId(transformReferenceToIdentifiable(ref, manifest));
    // Author
    Extension authorRoleExt = manifest.getExtensionByUrl("http://fhir.ch/ig/ch-epr-mhealth/StructureDefinition/ch-ext-author-authorrole");
    if (manifest.hasSource() || (authorRoleExt != null)) {
        Identifiable identifiable = null;
        Reference author = manifest.getSource();
        if (authorRoleExt != null) {
            Coding coding = authorRoleExt.castToCoding(authorRoleExt.getValue());
            if (coding != null) {
                identifiable = new Identifiable(coding.getCode(), new AssigningAuthority(noPrefix(coding.getSystem())));
            }
        }
        submissionSet.setAuthor(transformAuthor(author, manifest.getContained(), identifiable));
    }
    for (Extension recipientExt : manifest.getExtensionsByUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-intendedRecipient")) {
        Reference recipientRef = (Reference) recipientExt.getValue();
        Resource res = findResource(recipientRef, manifest.getContained());
        if (res instanceof Practitioner) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Practitioner) res));
            recipient.setTelecom(transform(((Practitioner) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Organization) {
            Recipient recipient = new Recipient();
            recipient.setOrganization(transform((Organization) res));
            recipient.setTelecom(transform(((Organization) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof PractitionerRole) {
            Recipient recipient = new Recipient();
            PractitionerRole role = (PractitionerRole) res;
            recipient.setOrganization(transform((Organization) findResource(role.getOrganization(), manifest.getContained())));
            recipient.setPerson(transform((Practitioner) findResource(role.getPractitioner(), manifest.getContained())));
            recipient.setTelecom(transform(role.getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Patient) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Patient) res));
            recipient.setTelecom(transform(((Patient) res).getTelecomFirstRep()));
        } else if (res instanceof RelatedPerson) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((RelatedPerson) res));
            recipient.setTelecom(transform(((RelatedPerson) res).getTelecomFirstRep()));
        }
    }
    Extension source = manifest.getExtensionByUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-sourceId");
    if (source != null && source.getValue() instanceof Identifier) {
        submissionSet.setSourceId(noPrefix(((Identifier) source.getValue()).getValue()));
    }
    String title = manifest.getTitle();
    if (title != null)
        submissionSet.setTitle(localizedString(title));
    Annotation note = manifest.getNoteFirstRep();
    if (note != null && note.hasText()) {
        submissionSet.setComments(localizedString(note.getText()));
    }
}