Examples with PractitionerRole org.hl7.fhir.r4.model.PractitionerRole used on opensource projects

Example 26 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project MobileAccessGateway by i4mi.

the class Iti66ResponseConverter method translateToFhir.

/**
 * convert ITI-18 query response to ITI-66 response bundle
 */
@Override
public List<ListResource> translateToFhir(QueryResponse input, Map<String, Object> parameters) {
    ArrayList<ListResource> list = new ArrayList<ListResource>();
    if (input != null && Status.SUCCESS.equals(input.getStatus())) {
        Map<String, ListResource> targetList = new HashMap<String, ListResource>();
        if (input.getSubmissionSets() != null) {
            for (SubmissionSet submissionSet : input.getSubmissionSets()) {
                ListResource documentManifest = new ListResource();
                documentManifest.setId(noUuidPrefix(submissionSet.getEntryUuid()));
                documentManifest.setCode(new CodeableConcept(new Coding("http://profiles.ihe.net/ITI/MHD/CodeSystem/MHDlistTypes", "submissionset", "Submission Set")));
                targetList.put(documentManifest.getId(), documentManifest);
                list.add(documentManifest);
                // limitedMetadata -> meta.profile canonical [0..*]
                if (submissionSet.isLimitedMetadata()) {
                    documentManifest.getMeta().addProfile("http://profiles.ihe.net/ITI/MHD/StructureDefinition/IHE.MHD.Minimal.SubmissionSet");
                } else {
                    documentManifest.getMeta().addProfile("http://profiles.ihe.net/ITI/MHD/StructureDefinition/IHE.MHD.Comprehensive.SubmissionSet");
                }
                // comment -> text Narrative [0..1]
                LocalizedString comments = submissionSet.getComments();
                if (comments != null) {
                    documentManifest.addNote().setText(comments.getValue());
                }
                // uniqueId -> masterIdentifier Identifier [0..1] [1..1]
                if (submissionSet.getUniqueId() != null) {
                    documentManifest.addIdentifier((new Identifier().setUse(IdentifierUse.USUAL).setSystem("urn:ietf:rfc:3986").setValue("urn:oid:" + submissionSet.getUniqueId())));
                }
                // entryUUID -> identifier Identifier [0..*]
                if (submissionSet.getEntryUuid() != null) {
                    documentManifest.addIdentifier((new Identifier().setUse(IdentifierUse.OFFICIAL).setSystem("urn:ietf:rfc:3986").setValue(asUuid(submissionSet.getEntryUuid()))));
                }
                // approved -> status=current Other status values are allowed but are not defined in this mapping to XDS.
                if (AvailabilityStatus.APPROVED.equals(submissionSet.getAvailabilityStatus())) {
                    documentManifest.setStatus(ListResource.ListStatus.CURRENT);
                }
                documentManifest.setMode(ListMode.WORKING);
                // contentTypeCode -> type CodeableConcept [0..1]
                if (submissionSet.getContentTypeCode() != null) {
                    documentManifest.addExtension().setUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-designationType").setValue(transform(submissionSet.getContentTypeCode()));
                }
                // patientId -> subject Reference(Patient| Practitioner| Group| Device) [0..1], Reference(Patient)
                if (submissionSet.getPatientId() != null) {
                    Identifiable patient = submissionSet.getPatientId();
                    documentManifest.setSubject(transformPatient(patient));
                }
                // submissionTime -> created dateTime [0..1]
                if (submissionSet.getSubmissionTime() != null) {
                    documentManifest.setDate(Date.from(submissionSet.getSubmissionTime().getDateTime().toInstant()));
                }
                // authorInstitution, authorPerson, authorRole, authorSpeciality, authorTelecommunication -> author Reference(Practitioner| PractitionerRole| Organization| Device| Patient| RelatedPerson) [0..*]
                if (submissionSet.getAuthors() != null) {
                    for (Author author : submissionSet.getAuthors()) {
                        documentManifest.setSource(transformAuthor(author));
                    }
                }
                // intendedRecipient -> recipient Reference(Patient| Practitioner| PractitionerRole| RelatedPerson| Organization) [0..*]
                List<Recipient> recipients = submissionSet.getIntendedRecipients();
                for (Recipient recipient : recipients) {
                    Organization org = recipient.getOrganization();
                    Person person = recipient.getPerson();
                    ContactPoint contact = transform(recipient.getTelecom());
                    var organization = transform(org);
                    Practitioner practitioner = transformPractitioner(person);
                    if (organization != null && practitioner == null) {
                        if (contact != null)
                            organization.addTelecom(contact);
                        documentManifest.addExtension().setUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-intendedRecipient").setValue(new Reference().setResource(organization));
                    } else if (organization != null && practitioner != null) {
                        PractitionerRole role = new PractitionerRole();
                        role.setPractitioner((Reference) new Reference().setResource(practitioner));
                        role.setOrganization((Reference) new Reference().setResource(organization));
                        if (contact != null)
                            role.addTelecom(contact);
                        documentManifest.addExtension().setUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-intendedRecipient").setValue(new Reference().setResource(role));
                    } else if (organization == null && practitioner != null) {
                    // May be a patient, related person or practitioner
                    }
                }
                // sourceId -> source uri [0..1] [1..1]
                if (submissionSet.getSourceId() != null) {
                    documentManifest.addExtension().setUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-sourceId").setValue(new Identifier().setValue("urn:oid:" + submissionSet.getSourceId()));
                }
                // title -> description string [0..1]
                LocalizedString title = submissionSet.getTitle();
                if (title != null) {
                    documentManifest.setTitle(title.getValue());
                }
            }
        }
        if (input.getAssociations() != null) {
            for (Association ass : input.getAssociations()) {
                AssociationType tt = ass.getAssociationType();
                String source = ass.getSourceUuid();
                String target = ass.getTargetUuid();
                if (tt == AssociationType.HAS_MEMBER) {
                    ListResource s = targetList.get(noUuidPrefix(source));
                    if (s != null) {
                        s.addEntry().setItem(new Reference().setReference("DocumentReference/" + noUuidPrefix(target)));
                    }
                }
            }
        }
    } else {
        processError(input);
    }
    return list;
}

Example 27 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project MobileAccessGateway by i4mi.

the class Iti67ResponseConverter method translateToFhir.

@Override
public List<DocumentReference> translateToFhir(QueryResponse input, Map<String, Object> parameters) {
    ArrayList<DocumentReference> list = new ArrayList<DocumentReference>();
    if (input != null && Status.SUCCESS.equals(input.getStatus())) {
        // process relationship association
        Map<String, List<DocumentReferenceRelatesToComponent>> relatesToMapping = new HashMap<String, List<DocumentReferenceRelatesToComponent>>();
        for (Association association : input.getAssociations()) {
            // Relationship type -> relatesTo.code code [1..1]
            // relationship reference -> relatesTo.target Reference(DocumentReference)
            String source = association.getSourceUuid();
            String target = association.getTargetUuid();
            AssociationType type = association.getAssociationType();
            DocumentReferenceRelatesToComponent relatesTo = new DocumentReferenceRelatesToComponent();
            if (type != null)
                switch(type) {
                    case APPEND:
                        relatesTo.setCode(DocumentRelationshipType.APPENDS);
                        break;
                    case REPLACE:
                        relatesTo.setCode(DocumentRelationshipType.REPLACES);
                        break;
                    case TRANSFORM:
                        relatesTo.setCode(DocumentRelationshipType.TRANSFORMS);
                        break;
                    case SIGNS:
                        relatesTo.setCode(DocumentRelationshipType.SIGNS);
                        break;
                }
            relatesTo.setTarget(new Reference().setReference("urn:oid:" + target));
            if (!relatesToMapping.containsKey(source))
                relatesToMapping.put(source, new ArrayList<DocumentReferenceRelatesToComponent>());
            relatesToMapping.get(source).add(relatesTo);
        }
        if (input.getDocumentEntries() != null) {
            for (DocumentEntry documentEntry : input.getDocumentEntries()) {
                DocumentReference documentReference = new DocumentReference();
                // FIXME do we need to cache this id in
                documentReference.setId(noUuidPrefix(documentEntry.getEntryUuid()));
                // relation to the DocumentManifest itself
                // for
                list.add(documentReference);
                // limitedMetadata -> meta.profile canonical [0..*]
                if (documentEntry.isLimitedMetadata()) {
                    documentReference.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE_MHD_Query_Comprehensive_DocumentReference");
                } else {
                    documentReference.getMeta().addProfile("http://ihe.net/fhir/StructureDefinition/IHE_MHD_Comprehensive_DocumentManifest");
                }
                // uniqueId -> masterIdentifier Identifier [0..1] [1..1]
                if (documentEntry.getUniqueId() != null) {
                    documentReference.setMasterIdentifier((new Identifier().setValue("urn:oid:" + documentEntry.getUniqueId())));
                }
                // DocumentReference.identifier. use shall be ‘official’
                if (documentEntry.getEntryUuid() != null) {
                    documentReference.addIdentifier((new Identifier().setSystem("urn:ietf:rfc:3986").setValue(asUuid(documentEntry.getEntryUuid()))).setUse(IdentifierUse.OFFICIAL));
                }
                // Other status values are allowed but are not defined in this mapping to XDS.
                if (AvailabilityStatus.APPROVED.equals(documentEntry.getAvailabilityStatus())) {
                    documentReference.setStatus(DocumentReferenceStatus.CURRENT);
                }
                if (AvailabilityStatus.DEPRECATED.equals(documentEntry.getAvailabilityStatus())) {
                    documentReference.setStatus(DocumentReferenceStatus.SUPERSEDED);
                }
                // contentTypeCode -> type CodeableConcept [0..1]
                if (documentEntry.getTypeCode() != null) {
                    documentReference.setType(transform(documentEntry.getTypeCode()));
                }
                // classCode -> category CodeableConcept [0..*]
                if (documentEntry.getClassCode() != null) {
                    documentReference.addCategory((transform(documentEntry.getClassCode())));
                }
                // representing the XDS Affinity Domain Patient.
                if (documentEntry.getPatientId() != null) {
                    Identifiable patient = documentEntry.getPatientId();
                    documentReference.setSubject(transformPatient(patient));
                }
                // creationTime -> date instant [0..1]
                if (documentEntry.getCreationTime() != null) {
                    documentReference.setDate(Date.from(documentEntry.getCreationTime().getDateTime().toInstant()));
                }
                // PractitionerRole| Organization| Device| Patient| RelatedPerson) [0..*]
                if (documentEntry.getAuthors() != null) {
                    for (Author author : documentEntry.getAuthors()) {
                        documentReference.addAuthor(transformAuthor(author));
                    }
                }
                // legalAuthenticator -> authenticator Note 1
                // Reference(Practitioner|Practition erRole|Organization [0..1]
                Person person = documentEntry.getLegalAuthenticator();
                if (person != null) {
                    Practitioner practitioner = transformPractitioner(person);
                    documentReference.setAuthenticator((Reference) new Reference().setResource(practitioner));
                }
                // Relationship Association -> relatesTo [0..*]
                // [1..1]
                documentReference.setRelatesTo(relatesToMapping.get(documentEntry.getEntryUuid()));
                // title -> description string [0..1]
                if (documentEntry.getTitle() != null) {
                    documentReference.setDescription(documentEntry.getTitle().getValue());
                }
                // DocumentReference itself.
                if (documentEntry.getConfidentialityCodes() != null) {
                    documentReference.addSecurityLabel(transform(documentEntry.getConfidentialityCodes()));
                }
                DocumentReferenceContentComponent content = documentReference.addContent();
                Attachment attachment = new Attachment();
                content.setAttachment(attachment);
                // mimeType -> content.attachment.contentType [1..1] code [0..1]
                if (documentEntry.getMimeType() != null) {
                    attachment.setContentType(documentEntry.getMimeType());
                }
                // languageCode -> content.attachment.language code [0..1]
                if (documentEntry.getLanguageCode() != null) {
                    attachment.setLanguage(documentEntry.getLanguageCode());
                }
                // retrievable location of the document -> content.attachment.url uri
                // [0..1] [1..1
                // has to defined, for the PoC we define
                // $host:port/camel/$repositoryid/$uniqueid
                attachment.setUrl(config.getUriMagXdsRetrieve() + "?uniqueId=" + documentEntry.getUniqueId() + "&repositoryUniqueId=" + documentEntry.getRepositoryUniqueId());
                // size -> content.attachment.size integer [0..1] The size is calculated
                if (documentEntry.getSize() != null) {
                    attachment.setSize(documentEntry.getSize().intValue());
                }
                // on the data prior to base64 encoding, if the data is base64 encoded.
                if (documentEntry.getHash() != null) {
                    attachment.setHash(Hex.fromHex(documentEntry.getHash()));
                }
                // comments -> content.attachment.title string [0..1]
                if (documentEntry.getComments() != null) {
                    attachment.setTitle(documentEntry.getComments().getValue());
                }
                // TcreationTime -> content.attachment.creation dateTime [0..1]
                if (documentEntry.getCreationTime() != null) {
                    attachment.setCreation(Date.from(documentEntry.getCreationTime().getDateTime().toInstant()));
                }
                // formatCode -> content.format Coding [0..1]
                if (documentEntry.getFormatCode() != null) {
                    content.setFormat(transform(documentEntry.getFormatCode()).getCodingFirstRep());
                }
                DocumentReferenceContextComponent context = new DocumentReferenceContextComponent();
                documentReference.setContext(context);
                // referenceIdList -> context.encounter Reference(Encounter) [0..*] When
                // referenceIdList contains an encounter, and a FHIR Encounter is available, it
                // may be referenced.
                // Map to context.related
                List<ReferenceId> refIds = documentEntry.getReferenceIdList();
                if (refIds != null) {
                    for (ReferenceId refId : refIds) {
                        context.getRelated().add(transform(refId));
                    }
                }
                // eventCodeList -> context.event CodeableConcept [0..*]
                if (documentEntry.getEventCodeList() != null) {
                    documentReference.getContext().setEvent(transformMultiple(documentEntry.getEventCodeList()));
                }
                // serviceStartTime serviceStopTime -> context.period Period [0..1]
                if (documentEntry.getServiceStartTime() != null || documentEntry.getServiceStopTime() != null) {
                    Period period = new Period();
                    period.setStartElement(transform(documentEntry.getServiceStartTime()));
                    period.setEndElement(transform(documentEntry.getServiceStopTime()));
                    documentReference.getContext().setPeriod(period);
                }
                // [0..1]
                if (documentEntry.getHealthcareFacilityTypeCode() != null) {
                    context.setFacilityType(transform(documentEntry.getHealthcareFacilityTypeCode()));
                }
                // practiceSettingCode -> context.practiceSetting CodeableConcept [0..1]
                if (documentEntry.getPracticeSettingCode() != null) {
                    context.setPracticeSetting(transform(documentEntry.getPracticeSettingCode()));
                }
                // sourcePatientId and sourcePatientInfo -> context.sourcePatientInfo
                // Reference(Patient) [0..1] Contained Patient Resource with
                // Patient.identifier.use element set to ‘usual’.
                Identifiable sourcePatientId = documentEntry.getSourcePatientId();
                PatientInfo sourcePatientInfo = documentEntry.getSourcePatientInfo();
                Patient sourcePatient = new Patient();
                if (sourcePatientId != null) {
                    sourcePatient.addIdentifier((new Identifier().setSystem("urn:oid:" + sourcePatientId.getAssigningAuthority().getUniversalId()).setValue(sourcePatientId.getId())).setUse(IdentifierUse.OFFICIAL));
                }
                if (sourcePatientInfo != null) {
                    sourcePatient.setBirthDateElement(transformToDate(sourcePatientInfo.getDateOfBirth()));
                    String gender = sourcePatientInfo.getGender();
                    if (gender != null) {
                        switch(gender) {
                            case "F":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.FEMALE);
                                break;
                            case "M":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.MALE);
                                break;
                            case "U":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.UNKNOWN);
                                break;
                            case "A":
                                sourcePatient.setGender(Enumerations.AdministrativeGender.OTHER);
                                break;
                        }
                    }
                    ListIterator<Name> names = sourcePatientInfo.getNames();
                    while (names.hasNext()) {
                        Name name = names.next();
                        sourcePatient.addName(transform(name));
                    }
                    ListIterator<Address> addresses = sourcePatientInfo.getAddresses();
                    while (addresses.hasNext()) {
                        Address address = addresses.next();
                        if (address != null)
                            sourcePatient.addAddress(transform(address));
                    }
                }
                if (sourcePatientId != null || sourcePatientInfo != null) {
                    context.getSourcePatientInfo().setResource(sourcePatient);
                }
            }
        }
    } else {
        processError(input);
    }
    return list;
}

Example 28 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project MobileAccessGateway by i4mi.

the class Iti65RequestConverter method processDocumentManifest.

/**
 * ITI-65: process DocumentManifest resource from Bundle
 * @param manifest
 * @param submissionSet
 */
private void processDocumentManifest(DocumentManifest manifest, SubmissionSet submissionSet) {
    // masterIdentifier	SubmissionSet.uniqueId
    Identifier masterIdentifier = manifest.getMasterIdentifier();
    submissionSet.setUniqueId(noPrefix(masterIdentifier.getValue()));
    submissionSet.assignEntryUuid();
    manifest.setId(submissionSet.getEntryUuid());
    CodeableConcept type = manifest.getType();
    submissionSet.setContentTypeCode(transformCodeableConcept(type));
    DateTimeType created = manifest.getCreatedElement();
    submissionSet.setSubmissionTime(timestampFromDate(created));
    // subject	SubmissionSet.patientId
    Reference ref = manifest.getSubject();
    submissionSet.setPatientId(transformReferenceToIdentifiable(ref, manifest));
    // Author
    Extension authorRoleExt = manifest.getExtensionByUrl("http://fhir.ch/ig/ch-epr-mhealth/StructureDefinition/ch-ext-author-authorrole");
    if (manifest.hasAuthor() || (authorRoleExt != null)) {
        Identifiable identifiable = null;
        Reference author = manifest.getAuthorFirstRep();
        if (authorRoleExt != null) {
            Coding coding = authorRoleExt.castToCoding(authorRoleExt.getValue());
            if (coding != null) {
                identifiable = new Identifiable(coding.getCode(), new AssigningAuthority(noPrefix(coding.getSystem())));
            }
        }
        submissionSet.setAuthor(transformAuthor(author, manifest.getContained(), identifiable));
    }
    // recipient	SubmissionSet.intendedRecipient
    for (Reference recipientRef : manifest.getRecipient()) {
        Resource res = findResource(recipientRef, manifest.getContained());
        if (res instanceof Practitioner) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Practitioner) res));
            recipient.setTelecom(transform(((Practitioner) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Organization) {
            Recipient recipient = new Recipient();
            recipient.setOrganization(transform((Organization) res));
            recipient.setTelecom(transform(((Organization) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof PractitionerRole) {
            Recipient recipient = new Recipient();
            PractitionerRole role = (PractitionerRole) res;
            recipient.setOrganization(transform((Organization) findResource(role.getOrganization(), manifest.getContained())));
            recipient.setPerson(transform((Practitioner) findResource(role.getPractitioner(), manifest.getContained())));
            recipient.setTelecom(transform(role.getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Patient) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Patient) res));
            recipient.setTelecom(transform(((Patient) res).getTelecomFirstRep()));
        } else if (res instanceof RelatedPerson) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((RelatedPerson) res));
            recipient.setTelecom(transform(((RelatedPerson) res).getTelecomFirstRep()));
        }
    }
    // source	SubmissionSet.sourceId
    String source = noPrefix(manifest.getSource());
    submissionSet.setSourceId(source);
    String description = manifest.getDescription();
    if (description != null)
        submissionSet.setTitle(localizedString(description));
}

Example 29 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project MobileAccessGateway by i4mi.

the class Iti65RequestConverter method processDocumentManifest.

/**
 * ITI-65: process ListResource resource from Bundle
 * @param manifest
 * @param submissionSet
 */
private void processDocumentManifest(ListResource manifest, SubmissionSet submissionSet) {
    for (Identifier id : manifest.getIdentifier()) {
        if (id.getUse() == null || id.getUse().equals(Identifier.IdentifierUse.OFFICIAL)) {
        } else if (id.getUse().equals(Identifier.IdentifierUse.USUAL)) {
            String uniqueId = noPrefix(id.getValue());
            submissionSet.setUniqueId(uniqueId);
        }
    }
    submissionSet.assignEntryUuid();
    manifest.setId(submissionSet.getEntryUuid());
    Extension designationType = manifest.getExtensionByUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-designationType");
    if (designationType != null && designationType.getValue() instanceof CodeableConcept) {
        submissionSet.setContentTypeCode(transformCodeableConcept((CodeableConcept) designationType.getValue()));
    }
    DateTimeType created = manifest.getDateElement();
    submissionSet.setSubmissionTime(timestampFromDate(created));
    // subject	SubmissionSet.patientId
    Reference ref = manifest.getSubject();
    submissionSet.setPatientId(transformReferenceToIdentifiable(ref, manifest));
    // Author
    Extension authorRoleExt = manifest.getExtensionByUrl("http://fhir.ch/ig/ch-epr-mhealth/StructureDefinition/ch-ext-author-authorrole");
    if (manifest.hasSource() || (authorRoleExt != null)) {
        Identifiable identifiable = null;
        Reference author = manifest.getSource();
        if (authorRoleExt != null) {
            Coding coding = authorRoleExt.castToCoding(authorRoleExt.getValue());
            if (coding != null) {
                identifiable = new Identifiable(coding.getCode(), new AssigningAuthority(noPrefix(coding.getSystem())));
            }
        }
        submissionSet.setAuthor(transformAuthor(author, manifest.getContained(), identifiable));
    }
    for (Extension recipientExt : manifest.getExtensionsByUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-intendedRecipient")) {
        Reference recipientRef = (Reference) recipientExt.getValue();
        Resource res = findResource(recipientRef, manifest.getContained());
        if (res instanceof Practitioner) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Practitioner) res));
            recipient.setTelecom(transform(((Practitioner) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Organization) {
            Recipient recipient = new Recipient();
            recipient.setOrganization(transform((Organization) res));
            recipient.setTelecom(transform(((Organization) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof PractitionerRole) {
            Recipient recipient = new Recipient();
            PractitionerRole role = (PractitionerRole) res;
            recipient.setOrganization(transform((Organization) findResource(role.getOrganization(), manifest.getContained())));
            recipient.setPerson(transform((Practitioner) findResource(role.getPractitioner(), manifest.getContained())));
            recipient.setTelecom(transform(role.getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Patient) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Patient) res));
            recipient.setTelecom(transform(((Patient) res).getTelecomFirstRep()));
        } else if (res instanceof RelatedPerson) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((RelatedPerson) res));
            recipient.setTelecom(transform(((RelatedPerson) res).getTelecomFirstRep()));
        }
    }
    Extension source = manifest.getExtensionByUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-sourceId");
    if (source != null && source.getValue() instanceof Identifier) {
        submissionSet.setSourceId(noPrefix(((Identifier) source.getValue()).getValue()));
    }
    String title = manifest.getTitle();
    if (title != null)
        submissionSet.setTitle(localizedString(title));
    Annotation note = manifest.getNoteFirstRep();
    if (note != null && note.hasText()) {
        submissionSet.setComments(localizedString(note.getText()));
    }
}

Example 30 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project MobileAccessGateway by i4mi.

the class Iti65RequestConverter method transformAuthor.

/**
 * FHIR Reference to Author -> XDS Author
 * @param author
 * @param contained
 * @return
 */
public Author transformAuthor(Reference author, List<Resource> contained, Identifiable authorRole) {
    if (author == null || author.getReference() == null) {
        if (authorRole != null) {
            Author result = new Author();
            Person person = new Person();
            // CARA PMP
            // At least an authorPerson, authorTelecommunication, or authorInstitution sub-attribute must be present
            // Either authorPerson, authorInstitution or authorTelecom shall be specified in the SubmissionSet [IHE ITI Technical Framework Volume 3 (4.2.3.1.4)].
            person.setName(transform(new HumanName().setFamily("---")));
            result.setAuthorPerson(person);
            result.getAuthorRole().add(authorRole);
            return result;
        }
        return null;
    }
    Resource authorObj = findResource(author, contained);
    if (authorObj instanceof Practitioner) {
        Practitioner practitioner = (Practitioner) authorObj;
        Author result = new Author();
        result.setAuthorPerson(transform((Practitioner) authorObj));
        for (ContactPoint contactPoint : practitioner.getTelecom()) result.getAuthorTelecom().add(transform(contactPoint));
        if (authorRole == null) {
            authorRole = new Identifiable("HCP", new AssigningAuthority("2.16.756.5.30.1.127.3.10.1.41"));
        }
        result.getAuthorRole().add(authorRole);
        return result;
    } else if (authorObj instanceof Patient) {
        Patient patient = (Patient) authorObj;
        Author result = new Author();
        result.setAuthorPerson(transform(patient));
        for (ContactPoint contactPoint : patient.getTelecom()) result.getAuthorTelecom().add(transform(contactPoint));
        if (authorRole == null) {
            authorRole = new Identifiable("PAT", new AssigningAuthority("2.16.756.5.30.1.127.3.10.1.41"));
        }
        result.getAuthorRole().add(authorRole);
        return result;
    } else if (authorObj instanceof PractitionerRole) {
        Author result = new Author();
        PractitionerRole role = (PractitionerRole) authorObj;
        Practitioner practitioner = (Practitioner) findResource(role.getPractitioner(), contained);
        if (practitioner != null)
            result.setAuthorPerson(transform(practitioner));
        Organization org = (Organization) findResource(role.getOrganization(), contained);
        if (org != null)
            result.getAuthorInstitution().add(transform(org));
        for (CodeableConcept code : role.getCode()) result.getAuthorRole().add(transformToIdentifiable(code));
        for (CodeableConcept speciality : role.getSpecialty()) result.getAuthorSpecialty().add(transformToIdentifiable(speciality));
        for (ContactPoint contactPoint : role.getTelecom()) result.getAuthorTelecom().add(transform(contactPoint));
        return result;
    } else
        throw new InvalidRequestException("Author role not supported.");
// return null;
}