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Example 21 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composePractitionerRolePractitionerRoleAvailableTimeComponent.

protected void composePractitionerRolePractitionerRoleAvailableTimeComponent(Complex parent, String parentType, String name, PractitionerRole.PractitionerRoleAvailableTimeComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "availableTime", name, element, index);
    for (int i = 0; i < element.getDaysOfWeek().size(); i++) composeCode(t, "PractitionerRole", "daysOfWeek", element.getDaysOfWeek().get(i), i);
    if (element.hasAllDayElement())
        composeBoolean(t, "PractitionerRole", "allDay", element.getAllDayElement(), -1);
    if (element.hasAvailableStartTimeElement())
        composeTime(t, "PractitionerRole", "availableStartTime", element.getAvailableStartTimeElement(), -1);
    if (element.hasAvailableEndTimeElement())
        composeTime(t, "PractitionerRole", "availableEndTime", element.getAvailableEndTimeElement(), -1);
}
Also used : Complex(org.hl7.fhir.dstu2016may.formats.RdfGenerator.Complex)

Example 22 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composePractitionerRolePractitionerRoleAvailableTimeComponent.

protected void composePractitionerRolePractitionerRoleAvailableTimeComponent(Complex parent, String parentType, String name, PractitionerRole.PractitionerRoleAvailableTimeComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "availableTime", name, element, index);
    for (int i = 0; i < element.getDaysOfWeek().size(); i++) composeEnum(t, "PractitionerRole", "daysOfWeek", element.getDaysOfWeek().get(i), i);
    if (element.hasAllDayElement())
        composeBoolean(t, "PractitionerRole", "allDay", element.getAllDayElement(), -1);
    if (element.hasAvailableStartTimeElement())
        composeTime(t, "PractitionerRole", "availableStartTime", element.getAvailableStartTimeElement(), -1);
    if (element.hasAvailableEndTimeElement())
        composeTime(t, "PractitionerRole", "availableEndTime", element.getAvailableEndTimeElement(), -1);
}
Also used : Complex(org.hl7.fhir.r4.utils.formats.Turtle.Complex)

Example 23 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project org.hl7.fhir.core by hapifhir.

the class R3R4ConversionTests method createResource.

@Override
public Base createResource(Object appInfo, Base res, boolean atRootofTransform) {
    if (res instanceof Resource && (res.fhirType().equals("CodeSystem") || res.fhirType().equals("CareTeam") || res.fhirType().equals("PractitionerRole"))) {
        Resource r = (Resource) res;
        extras.add(r);
        r.setId(workingid + "-" + extras.size());
    }
    return res;
}
Also used : Resource(org.hl7.fhir.r4.model.Resource) MetadataResource(org.hl7.fhir.r4.model.MetadataResource)

Example 24 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project org.hl7.fhir.core by hapifhir.

the class TurtleTests method test_practitionerrole_example.

@Test
public void test_practitionerrole_example() throws FileNotFoundException, IOException, Exception {
    System.out.println("practitionerrole-example.ttl");
    new Turtle().parse(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\practitionerrole-example.ttl"));
}
Also used : Turtle(org.hl7.fhir.dstu3.utils.formats.Turtle) Test(org.junit.jupiter.api.Test)

Example 25 with PractitionerRole

use of org.hl7.fhir.r4.model.PractitionerRole in project gpconnect-demonstrator by nhsconnect.

the class PatientResourceProvider method StructuredRecordOperation.

@Operation(name = GET_STRUCTURED_RECORD_OPERATION_NAME)
public Bundle StructuredRecordOperation(@ResourceParam Parameters params) throws FHIRException {
    Bundle structuredBundle = new Bundle();
    Boolean getAllergies = false;
    Boolean includeResolved = false;
    Boolean getMedications = false;
    Boolean includePrescriptionIssues = false;
    Period medicationPeriod = null;
    String NHS = getNhsNumber(params);
    PatientDetails patientDetails = patientSearch.findPatient(NHS);
    // see https://nhsconnect.github.io/gpconnect/accessrecord_structured_development_retrieve_patient_record.html#error-handling
    if (patientDetails == null || patientDetails.isSensitive() || patientDetails.isDeceased() || !patientDetails.isActive()) {
        throw OperationOutcomeFactory.buildOperationOutcomeException(new ResourceNotFoundException("No patient details found for patient ID: " + NHS), SystemCode.PATIENT_NOT_FOUND, IssueType.NOTFOUND);
    }
    if (NHS.equals(patientNoconsent)) {
        throw OperationOutcomeFactory.buildOperationOutcomeException(new ForbiddenOperationException("No patient consent to share for patient ID: " + NHS), SystemCode.NO_PATIENT_CONSENT, IssueType.FORBIDDEN);
    }
    operationOutcome = null;
    for (ParametersParameterComponent param : params.getParameter()) {
        if (validateParametersName(param.getName())) {
            if (param.getName().equals(SystemConstants.INCLUDE_ALLERGIES)) {
                getAllergies = true;
                if (param.getPart().isEmpty()) {
                    // addWarningIssue(param, IssueType.REQUIRED, "Miss parameter part : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES);
                    throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                }
                boolean includeResolvedParameterPartPresent = false;
                for (ParametersParameterComponent paramPart : param.getPart()) {
                    if (paramPart.getName().equals(SystemConstants.INCLUDE_RESOLVED_ALLERGIES)) {
                        if (paramPart.getValue() instanceof BooleanType) {
                            includeResolved = Boolean.valueOf(paramPart.getValue().primitiveValue());
                            includeResolvedParameterPartPresent = true;
                        } else {
                            throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                        }
                    } else {
                        addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
                    // throw OperationOutcomeFactory.buildOperationOutcomeException(
                    // new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
                    // SystemCode.INVALID_PARAMETER, IssueType.INVALID);
                    }
                }
                if (!includeResolvedParameterPartPresent) {
                    throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                }
            }
            if (param.getName().equals(SystemConstants.INCLUDE_MEDICATION)) {
                getMedications = true;
                boolean isIncludedPrescriptionIssuesExist = false;
                for (ParametersParameterComponent paramPart : param.getPart()) {
                    if (paramPart.getName().equals(SystemConstants.INCLUDE_PRESCRIPTION_ISSUES)) {
                        if (paramPart.getValue() instanceof BooleanType) {
                            includePrescriptionIssues = Boolean.valueOf(paramPart.getValue().primitiveValue());
                            isIncludedPrescriptionIssuesExist = true;
                        }
                    } else if (paramPart.getName().equals(SystemConstants.MEDICATION_SEARCH_FROM_DATE) && paramPart.getValue() instanceof DateType) {
                        DateType startDateDt = (DateType) paramPart.getValue();
                        medicationPeriod = new Period();
                        medicationPeriod.setStart(startDateDt.getValue());
                        medicationPeriod.setEnd(null);
                        String startDate = startDateDt.asStringValue();
                        if (!validateStartDateParamAndEndDateParam(startDate, null)) {
                        // addWarningIssue(param, paramPart, IssueType.INVALID, "Invalid date used");
                        }
                    } else {
                        addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
                    // throw OperationOutcomeFactory.buildOperationOutcomeException(
                    // new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
                    // SystemCode.INVALID_PARAMETER, IssueType.INVALID);
                    }
                }
                if (!isIncludedPrescriptionIssuesExist) {
                    // # 1.2.6 now defaults to true if not provided
                    includePrescriptionIssues = true;
                }
            }
        } else {
            // invalid parameter
            addWarningIssue(param, IssueType.NOTSUPPORTED);
        }
    }
    // for parameter
    // Add Patient
    Patient patient = patientDetailsToPatientResourceConverter(patientDetails);
    if (patient.getIdentifierFirstRep().getValue().equals(NHS)) {
        structuredBundle.addEntry().setResource(patient);
    }
    // Organization from patient
    Set<String> orgIds = new HashSet<>();
    orgIds.add(patientDetails.getManagingOrganization());
    // Practitioner from patient
    Set<String> practitionerIds = new HashSet<>();
    List<Reference> practitionerReferenceList = patient.getGeneralPractitioner();
    practitionerReferenceList.forEach(practitionerReference -> {
        String[] pracRef = practitionerReference.getReference().split("/");
        if (pracRef.length > 1) {
            practitionerIds.add(pracRef[1]);
        }
    });
    if (getAllergies) {
        structuredBundle = structuredAllergyIntoleranceBuilder.buildStructuredAllergyIntolerence(NHS, practitionerIds, structuredBundle, includeResolved);
    }
    if (getMedications) {
        structuredBundle = populateMedicationBundle.addMedicationBundleEntries(structuredBundle, patientDetails, includePrescriptionIssues, medicationPeriod, practitionerIds, orgIds);
    }
    // Add all practitioners and practitioner roles
    for (String practitionerId : practitionerIds) {
        Practitioner pracResource = practitionerResourceProvider.getPractitionerById(new IdType(practitionerId));
        structuredBundle.addEntry().setResource(pracResource);
        List<PractitionerRole> practitionerRoleList = practitionerRoleResourceProvider.getPractitionerRoleByPracticionerId(new IdType(practitionerId));
        for (PractitionerRole role : practitionerRoleList) {
            String[] split = role.getOrganization().getReference().split("/");
            orgIds.add(split[1]);
            structuredBundle.addEntry().setResource(role);
        }
    }
    // Add all organizations
    for (String orgId : orgIds) {
        OrganizationDetails organizationDetails = organizationSearch.findOrganizationDetails(new Long(orgId));
        Organization organization = organizationResourceProvider.convertOrganizationDetailsToOrganization(organizationDetails);
        structuredBundle.addEntry().setResource(organization);
    }
    structuredBundle.setType(BundleType.COLLECTION);
    structuredBundle.getMeta().addProfile(SystemURL.SD_GPC_STRUCTURED_BUNDLE);
    if (operationOutcome != null) {
        structuredBundle.addEntry().setResource(operationOutcome);
    } else {
        removeDuplicateResources(structuredBundle);
    }
    return structuredBundle;
}
Also used : OrganizationDetails(uk.gov.hscic.model.organization.OrganizationDetails) ForbiddenOperationException(ca.uhn.fhir.rest.server.exceptions.ForbiddenOperationException) ResourceNotFoundException(ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException) UnprocessableEntityException(ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException) PopulateMedicationBundle(uk.gov.hscic.medications.PopulateMedicationBundle) PatientDetails(uk.gov.hscic.model.patient.PatientDetails) ParametersParameterComponent(org.hl7.fhir.dstu3.model.Parameters.ParametersParameterComponent)

Aggregations

PractitionerRole (org.hl7.fhir.r4.model.PractitionerRole)26 Reference (org.hl7.fhir.r4.model.Reference)19 CodeableConcept (org.hl7.fhir.r4.model.CodeableConcept)16 Coding (org.hl7.fhir.r4.model.Coding)15 Identifier (org.hl7.fhir.r4.model.Identifier)13 ArrayList (java.util.ArrayList)12 Practitioner (org.hl7.fhir.r4.model.Practitioner)12 Resource (org.hl7.fhir.r4.model.Resource)12 List (java.util.List)11 PractitionerRole (org.hl7.fhir.dstu3.model.PractitionerRole)11 RelatedPerson (org.hl7.fhir.r4.model.RelatedPerson)10 Optional (java.util.Optional)9 DateTimeType (org.hl7.fhir.r4.model.DateTimeType)7 EncounterParticipantComponent (org.hl7.fhir.r4.model.Encounter.EncounterParticipantComponent)7 Period (org.hl7.fhir.r4.model.Period)7 Test (org.junit.jupiter.api.Test)7 Identifiable (org.openehealth.ipf.commons.ihe.xds.core.metadata.Identifiable)7 Component (org.springframework.stereotype.Component)7 ContactPoint (org.hl7.fhir.r4.model.ContactPoint)6 RequiredArgsConstructor (lombok.RequiredArgsConstructor)5