Examples with Identifier org.hl7.fhir.r4.model.Identifier used on opensource projects

Example 61 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project cqf-ruler by DBCG.

the class DetectedIssueBuilder method initializeR4.

@Override
protected void initializeR4(T theResource) {
    super.initializeR4(theResource);
    org.hl7.fhir.r4.model.DetectedIssue detectedIssue = (org.hl7.fhir.r4.model.DetectedIssue) theResource;
    List<org.hl7.fhir.r4.model.Identifier> identifier = new ArrayList<>();
    identifier.add(new org.hl7.fhir.r4.model.Identifier().setSystem(getIdentifier().getKey()).setValue(getIdentifier().getValue()));
    detectedIssue.setIdentifier(identifier).setPatient(new org.hl7.fhir.r4.model.Reference(myPatient)).setStatus(org.hl7.fhir.r4.model.DetectedIssue.DetectedIssueStatus.valueOf(myStatus)).setCode(new CodeableConcept().addCoding(new Coding().setSystem(getCodeSetting().getSystem()).setCode(getCodeSetting().getCode()).setDisplay(getCodeSetting().getDisplay())));
    getEvidenceDetails().forEach(evidence -> detectedIssue.addEvidence(new DetectedIssueEvidenceComponent().addDetail(new org.hl7.fhir.r4.model.Reference(evidence))));
}

Example 62 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project cqf-ruler by DBCG.

the class DetectedIssueBuilder method initializeDstu2_1.

@Override
protected void initializeDstu2_1(T theResource) {
    super.initializeDstu2_1(theResource);
    org.hl7.fhir.dstu2016may.model.DetectedIssue detectedIssue = (org.hl7.fhir.dstu2016may.model.DetectedIssue) theResource;
    detectedIssue.setIdentifier(new Identifier().setSystem(getIdentifier().getKey()).setValue(getIdentifier().getValue())).setPatient(new Reference(myPatient));
    getEvidenceDetails().forEach(detectedIssue::setReference);
}

Example 63 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project cqf-ruler by DBCG.

the class ReportProvider method patientReport.

private Parameters.ParametersParameterComponent patientReport(Patient thePatient, Period thePeriod, String serverBase) {
    String patientId = thePatient.getIdElement().getIdPart();
    final Map<IIdType, IAnyResource> bundleEntries = new HashMap<>();
    bundleEntries.put(thePatient.getIdElement(), thePatient);
    ReferenceParam subjectParam = new ReferenceParam(patientId);
    search(MeasureReport.class, Searches.byParam("subject", subjectParam)).getAllResourcesTyped().forEach(measureReport -> {
        if (measureReport.getPeriod().getEnd().before(thePeriod.getStart()) || measureReport.getPeriod().getStart().after(thePeriod.getEnd())) {
            return;
        }
        bundleEntries.putIfAbsent(measureReport.getIdElement(), measureReport);
        getEvaluatedResources(measureReport).values().forEach(resource -> bundleEntries.putIfAbsent(resource.getIdElement(), resource));
    });
    Bundle patientReportBundle = new Bundle();
    patientReportBundle.setMeta(new Meta().addProfile(PATIENT_REPORT_PROFILE_URL));
    patientReportBundle.setType(Bundle.BundleType.COLLECTION);
    patientReportBundle.setTimestamp(new Date());
    patientReportBundle.setId(patientId + "-report");
    patientReportBundle.setIdentifier(new Identifier().setSystem("urn:ietf:rfc:3986").setValue("urn:uuid:" + UUID.randomUUID().toString()));
    bundleEntries.entrySet().forEach(resource -> patientReportBundle.addEntry(new Bundle.BundleEntryComponent().setResource((Resource) resource.getValue()).setFullUrl(Operations.getFullUrl(serverBase, resource.getValue().fhirType(), resource.getValue().getIdElement().getIdPart()))));
    Parameters.ParametersParameterComponent patientParameter = new Parameters.ParametersParameterComponent();
    patientParameter.setResource(patientReportBundle);
    patientParameter.setId(thePatient.getIdElement().getIdPart() + "-report");
    patientParameter.setName("return");
    return patientParameter;
}

Example 64 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project ipf by oehf.

the class Iti67ResourceProvider method documentReferenceSearch.

@SuppressWarnings("unused")
@Search(type = DocumentReference.class)
public IBundleProvider documentReferenceSearch(@RequiredParam(name = DocumentReference.SP_PATIENT, chainWhitelist = { "", Patient.SP_IDENTIFIER }) ReferenceParam patient, @OptionalParam(name = DocumentReference.SP_STATUS) TokenOrListParam status, @OptionalParam(name = DocumentReference.SP_IDENTIFIER) TokenParam identifier, @OptionalParam(name = DocumentReference.SP_DATE) DateRangeParam date, @OptionalParam(name = STU3_INDEXED) DateRangeParam indexed, @OptionalParam(name = DocumentReference.SP_AUTHOR, chainWhitelist = { Practitioner.SP_FAMILY, Practitioner.SP_GIVEN }) ReferenceAndListParam author, @OptionalParam(name = DocumentReference.SP_CATEGORY) TokenOrListParam category, @OptionalParam(name = STU3_CLASS) TokenOrListParam class_, @OptionalParam(name = DocumentReference.SP_TYPE) TokenOrListParam type, @OptionalParam(name = DocumentReference.SP_SETTING) TokenOrListParam setting, @OptionalParam(name = DocumentReference.SP_PERIOD) DateRangeParam period, @OptionalParam(name = DocumentReference.SP_FACILITY) TokenOrListParam facility, @OptionalParam(name = DocumentReference.SP_EVENT) TokenOrListParam event, @OptionalParam(name = DocumentReference.SP_SECURITY_LABEL) TokenOrListParam securityLabel, @OptionalParam(name = STU3_SECURITY_LABEL) TokenOrListParam label, @OptionalParam(name = DocumentReference.SP_FORMAT) TokenOrListParam format, @OptionalParam(name = DocumentReference.SP_RELATED, chainWhitelist = { "", DocumentReference.SP_IDENTIFIER }) ReferenceOrListParam related, // -> related.identifier
@OptionalParam(name = STU3_RELATED_ID) TokenOrListParam relatedId, // -> related
@OptionalParam(name = STU3_RELATED_REF) ReferenceOrListParam relatedRef, // Extension to ITI-67
@OptionalParam(name = IAnyResource.SP_RES_ID) TokenParam resourceId, @Sort SortSpec sortSpec, @IncludeParam Set<Include> includeSpec, RequestDetails requestDetails, HttpServletRequest httpServletRequest, HttpServletResponse httpServletResponse) {
    // Be graceful and accept STU3 parameters as well
    var dateParam = date != null ? date : indexed;
    var categoryParam = category != null ? category : class_;
    var securityLabelParam = securityLabel != null ? securityLabel : label;
    // Handle "related" parameters
    ReferenceOrListParam relatedParam = new ReferenceOrListParam();
    TokenOrListParam relatedIdParam = new TokenOrListParam();
    if (relatedRef != null) {
        relatedParam = relatedRef;
    } else if (relatedId != null) {
        relatedIdParam = relatedId;
    } else if (related != null) {
        related.getValuesAsQueryTokens().stream().filter(referenceParam -> !DocumentReference.SP_IDENTIFIER.equals(referenceParam.getChain())).forEach(relatedParam::addOr);
        related.getValuesAsQueryTokens().stream().filter(referenceParam -> DocumentReference.SP_IDENTIFIER.equals(referenceParam.getChain())).map(referenceParam -> referenceParam.toTokenParam(getFhirContext())).forEach(relatedIdParam::addOr);
    }
    var searchParameters = Iti67SearchParameters.builder().status(status).identifier(identifier).date(dateParam).category(categoryParam).type(type).setting(setting).period(period).facility(facility).event(event).securityLabel(securityLabelParam).format(format).related(relatedParam).relatedId(relatedIdParam)._id(resourceId).sortSpec(sortSpec).includeSpec(includeSpec).fhirContext(getFhirContext()).build();
    searchParameters.setAuthor(author);
    var patientChain = patient.getChain();
    if (Patient.SP_IDENTIFIER.equals(patientChain)) {
        searchParameters.setPatientIdentifier(patient.toTokenParam(getFhirContext()));
    } else if (patientChain == null || patientChain.isEmpty()) {
        searchParameters.setPatientReference(patient);
    }
    // Run down the route
    return requestBundleProvider(null, searchParameters, ResourceType.DocumentReference.name(), httpServletRequest, httpServletResponse, requestDetails);
}

Example 65 with Identifier

use of org.hl7.fhir.r4.model.Identifier in project BridgeServer2 by Sage-Bionetworks.

the class CRCControllerTest method makeProcedureRequest.

private String makeProcedureRequest() {
    ProcedureRequest procedure = new ProcedureRequest();
    Identifier id = new Identifier();
    id.setSystem(USER_ID_VALUE_NS);
    id.setValue(TEST_USER_ID);
    Reference ref = new Reference();
    ref.setIdentifier(id);
    procedure.setSubject(ref);
    return FHIR_CONTEXT.newJsonParser().encodeResourceToString(procedure);
}