Examples with Medication org.hl7.fhir.r4.model.Medication used on opensource projects

Example 66 with Medication

use of org.hl7.fhir.r4.model.Medication in project org.hl7.fhir.core by hapifhir.

the class ArgonautConverter method processMedicationsSection.

private void processMedicationsSection(CDAUtilities cda, Convert convert, Element section, Context context) throws Exception {
    scanSection("Medications", section);
    ListResource list = new ListResource();
    list.setId(context.getBaseId() + "-list-medications");
    list.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/list-daf-dafmedicationlist");
    list.setSubject(context.getSubjectRef());
    list.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")), null));
    list.setTitle(cda.getChild(section, "title").getTextContent());
    list.setStatus(ListStatus.CURRENT);
    list.setMode(ListMode.SNAPSHOT);
    list.setDateElement(context.getNow());
    list.setSource(context.getAuthorRef());
    buildNarrative(list, cda.getChild(section, "text"));
    int i = 0;
    for (Element c : cda.getChildren(section, "entry")) {
        // allergy problem act
        Element sa = cda.getChild(c, "substanceAdministration");
        MedicationStatement ms = new MedicationStatement();
        ms.setId(context.getBaseId() + "-medication-" + i);
        ms.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/medicationstatement-daf-dafmedicationstatement");
        i++;
        ms.setSubject(context.getSubjectRef());
        boolean found = false;
        for (Element e : cda.getChildren(sa, "id")) {
            Identifier id = convert.makeIdentifierFromII(e);
            ms.getIdentifier().add(id);
        }
        if (!found) {
            ms.setStatus(MedicationStatementStatus.COMPLETED);
            list.addEntry().setItem(new Reference().setReference("MedicationStatement/" + ms.getId()));
            // allergy observation
            Element mm = cda.getChild(cda.getChild(cda.getChild(sa, "consumable"), "manufacturedProduct"), "manufacturedMaterial");
            ms.setMedication(new Reference().setReference("#med"));
            Medication med = new Medication();
            med.setId("med");
            med.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(mm, "code")), null));
            ms.getContained().add(med);
            Dosage dosage = ms.addDosage();
            // allergy observation
            Element qty = cda.getChild(sa, "doseQuantity");
            try {
                if (cda.getChild(qty, "low") != null) {
                    // todo: this is not correct?
                    dosage.getExtension().add(new Extension().setUrl("http://healthintersections.com.au/fhir/extensions/medication-statement-range").setValue(convert.makeRangeFromIVLPQ(qty)));
                } else {
                    dosage.setDose(convert.makeQuantityFromPQ(qty));
                }
            } catch (Exception e) {
                System.out.println("  invalid dose quantity '" + qty.getAttribute("value") + " " + qty.getAttribute("unit") + "' (" + e.getClass().getName() + ") in " + context.getBaseId());
            }
            dosage.setRoute(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(sa, "routeCode")), null));
            Type t = convert.makeSomethingFromGTS(cda.getChildren(sa, "effectiveTime"));
            if (t instanceof Timing) {
                dosage.setTiming((Timing) t);
                if (dosage.getTiming().hasRepeat() && dosage.getTiming().getRepeat().hasBounds())
                    ms.setEffective(dosage.getTiming().getRepeat().getBounds());
            } else if (t instanceof Period)
                ms.setEffective(t);
            else
                throw new Exception("Undecided how to handle " + t.getClass().getName());
            for (Element e : cda.getChildren(sa, "author")) {
                if (ms.hasInformationSource())
                    throw new Error("additional author discovered");
                Practitioner p = processPerformer(cda, convert, context, e, "assignedAuthor", "assignedPerson");
                Reference ref = new Reference().setReference("Practitioner/" + p.getId()).setDisplay(p.getUserString("display"));
                ms.setInformationSource(ref);
                ms.setDateAssertedElement(convert.makeDateTimeFromTS(cda.getChild(e, "time")));
            }
            saveResource(ms);
        }
    }
    saveResource(list);
}

Example 67 with Medication

use of org.hl7.fhir.r4.model.Medication in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeMedicationMedicationProductBatchComponent.

protected void composeMedicationMedicationProductBatchComponent(Complex parent, String parentType, String name, Medication.MedicationProductBatchComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "batch", name, element, index);
    if (element.hasLotNumberElement())
        composeString(t, "Medication", "lotNumber", element.getLotNumberElement(), -1);
    if (element.hasExpirationDateElement())
        composeDateTime(t, "Medication", "expirationDate", element.getExpirationDateElement(), -1);
}

Example 68 with Medication

use of org.hl7.fhir.r4.model.Medication in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeMedicationDispense.

protected void composeMedicationDispense(Complex parent, String parentType, String name, MedicationDispense element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "MedicationDispense", name, element, index);
    if (element.hasIdentifier())
        composeIdentifier(t, "MedicationDispense", "identifier", element.getIdentifier(), -1);
    if (element.hasStatusElement())
        composeEnum(t, "MedicationDispense", "status", element.getStatusElement(), -1);
    if (element.hasMedication())
        composeType(t, "MedicationDispense", "medication", element.getMedication(), -1);
    if (element.hasPatient())
        composeReference(t, "MedicationDispense", "patient", element.getPatient(), -1);
    if (element.hasDispenser())
        composeReference(t, "MedicationDispense", "dispenser", element.getDispenser(), -1);
    for (int i = 0; i < element.getAuthorizingPrescription().size(); i++) composeReference(t, "MedicationDispense", "authorizingPrescription", element.getAuthorizingPrescription().get(i), i);
    if (element.hasType())
        composeCodeableConcept(t, "MedicationDispense", "type", element.getType(), -1);
    if (element.hasQuantity())
        composeQuantity(t, "MedicationDispense", "quantity", element.getQuantity(), -1);
    if (element.hasDaysSupply())
        composeQuantity(t, "MedicationDispense", "daysSupply", element.getDaysSupply(), -1);
    if (element.hasWhenPreparedElement())
        composeDateTime(t, "MedicationDispense", "whenPrepared", element.getWhenPreparedElement(), -1);
    if (element.hasWhenHandedOverElement())
        composeDateTime(t, "MedicationDispense", "whenHandedOver", element.getWhenHandedOverElement(), -1);
    if (element.hasDestination())
        composeReference(t, "MedicationDispense", "destination", element.getDestination(), -1);
    for (int i = 0; i < element.getReceiver().size(); i++) composeReference(t, "MedicationDispense", "receiver", element.getReceiver().get(i), i);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "MedicationDispense", "note", element.getNote().get(i), i);
    for (int i = 0; i < element.getDosageInstruction().size(); i++) composeMedicationDispenseMedicationDispenseDosageInstructionComponent(t, "MedicationDispense", "dosageInstruction", element.getDosageInstruction().get(i), i);
    if (element.hasSubstitution())
        composeMedicationDispenseMedicationDispenseSubstitutionComponent(t, "MedicationDispense", "substitution", element.getSubstitution(), -1);
}

Example 69 with Medication

use of org.hl7.fhir.r4.model.Medication in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeMedicationRequest.

protected void composeMedicationRequest(Complex parent, String parentType, String name, MedicationRequest element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "MedicationRequest", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "MedicationRequest", "identifier", element.getIdentifier().get(i), i);
    for (int i = 0; i < element.getDefinition().size(); i++) composeReference(t, "MedicationRequest", "definition", element.getDefinition().get(i), i);
    for (int i = 0; i < element.getBasedOn().size(); i++) composeReference(t, "MedicationRequest", "basedOn", element.getBasedOn().get(i), i);
    if (element.hasGroupIdentifier())
        composeIdentifier(t, "MedicationRequest", "groupIdentifier", element.getGroupIdentifier(), -1);
    if (element.hasStatusElement())
        composeEnum(t, "MedicationRequest", "status", element.getStatusElement(), -1);
    if (element.hasIntentElement())
        composeEnum(t, "MedicationRequest", "intent", element.getIntentElement(), -1);
    if (element.hasCategory())
        composeCodeableConcept(t, "MedicationRequest", "category", element.getCategory(), -1);
    if (element.hasPriorityElement())
        composeEnum(t, "MedicationRequest", "priority", element.getPriorityElement(), -1);
    if (element.hasMedication())
        composeType(t, "MedicationRequest", "medication", element.getMedication(), -1);
    if (element.hasSubject())
        composeReference(t, "MedicationRequest", "subject", element.getSubject(), -1);
    if (element.hasContext())
        composeReference(t, "MedicationRequest", "context", element.getContext(), -1);
    for (int i = 0; i < element.getSupportingInformation().size(); i++) composeReference(t, "MedicationRequest", "supportingInformation", element.getSupportingInformation().get(i), i);
    if (element.hasAuthoredOnElement())
        composeDateTime(t, "MedicationRequest", "authoredOn", element.getAuthoredOnElement(), -1);
    if (element.hasRequester())
        composeMedicationRequestMedicationRequestRequesterComponent(t, "MedicationRequest", "requester", element.getRequester(), -1);
    if (element.hasRecorder())
        composeReference(t, "MedicationRequest", "recorder", element.getRecorder(), -1);
    for (int i = 0; i < element.getReasonCode().size(); i++) composeCodeableConcept(t, "MedicationRequest", "reasonCode", element.getReasonCode().get(i), i);
    for (int i = 0; i < element.getReasonReference().size(); i++) composeReference(t, "MedicationRequest", "reasonReference", element.getReasonReference().get(i), i);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "MedicationRequest", "note", element.getNote().get(i), i);
    for (int i = 0; i < element.getDosageInstruction().size(); i++) composeDosage(t, "MedicationRequest", "dosageInstruction", element.getDosageInstruction().get(i), i);
    if (element.hasDispenseRequest())
        composeMedicationRequestMedicationRequestDispenseRequestComponent(t, "MedicationRequest", "dispenseRequest", element.getDispenseRequest(), -1);
    if (element.hasSubstitution())
        composeMedicationRequestMedicationRequestSubstitutionComponent(t, "MedicationRequest", "substitution", element.getSubstitution(), -1);
    if (element.hasPriorPrescription())
        composeReference(t, "MedicationRequest", "priorPrescription", element.getPriorPrescription(), -1);
    for (int i = 0; i < element.getDetectedIssue().size(); i++) composeReference(t, "MedicationRequest", "detectedIssue", element.getDetectedIssue().get(i), i);
    for (int i = 0; i < element.getEventHistory().size(); i++) composeReference(t, "MedicationRequest", "eventHistory", element.getEventHistory().get(i), i);
}

Example 70 with Medication

use of org.hl7.fhir.r4.model.Medication in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeMedicationDispense.

protected void composeMedicationDispense(Complex parent, String parentType, String name, MedicationDispense element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "MedicationDispense", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "MedicationDispense", "identifier", element.getIdentifier().get(i), i);
    for (int i = 0; i < element.getPartOf().size(); i++) composeReference(t, "MedicationDispense", "partOf", element.getPartOf().get(i), i);
    if (element.hasStatusElement())
        composeEnum(t, "MedicationDispense", "status", element.getStatusElement(), -1);
    if (element.hasCategory())
        composeCodeableConcept(t, "MedicationDispense", "category", element.getCategory(), -1);
    if (element.hasMedication())
        composeType(t, "MedicationDispense", "medication", element.getMedication(), -1);
    if (element.hasSubject())
        composeReference(t, "MedicationDispense", "subject", element.getSubject(), -1);
    if (element.hasContext())
        composeReference(t, "MedicationDispense", "context", element.getContext(), -1);
    for (int i = 0; i < element.getSupportingInformation().size(); i++) composeReference(t, "MedicationDispense", "supportingInformation", element.getSupportingInformation().get(i), i);
    for (int i = 0; i < element.getPerformer().size(); i++) composeMedicationDispenseMedicationDispensePerformerComponent(t, "MedicationDispense", "performer", element.getPerformer().get(i), i);
    for (int i = 0; i < element.getAuthorizingPrescription().size(); i++) composeReference(t, "MedicationDispense", "authorizingPrescription", element.getAuthorizingPrescription().get(i), i);
    if (element.hasType())
        composeCodeableConcept(t, "MedicationDispense", "type", element.getType(), -1);
    if (element.hasQuantity())
        composeQuantity(t, "MedicationDispense", "quantity", element.getQuantity(), -1);
    if (element.hasDaysSupply())
        composeQuantity(t, "MedicationDispense", "daysSupply", element.getDaysSupply(), -1);
    if (element.hasWhenPreparedElement())
        composeDateTime(t, "MedicationDispense", "whenPrepared", element.getWhenPreparedElement(), -1);
    if (element.hasWhenHandedOverElement())
        composeDateTime(t, "MedicationDispense", "whenHandedOver", element.getWhenHandedOverElement(), -1);
    if (element.hasDestination())
        composeReference(t, "MedicationDispense", "destination", element.getDestination(), -1);
    for (int i = 0; i < element.getReceiver().size(); i++) composeReference(t, "MedicationDispense", "receiver", element.getReceiver().get(i), i);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "MedicationDispense", "note", element.getNote().get(i), i);
    for (int i = 0; i < element.getDosageInstruction().size(); i++) composeDosage(t, "MedicationDispense", "dosageInstruction", element.getDosageInstruction().get(i), i);
    if (element.hasSubstitution())
        composeMedicationDispenseMedicationDispenseSubstitutionComponent(t, "MedicationDispense", "substitution", element.getSubstitution(), -1);
    for (int i = 0; i < element.getDetectedIssue().size(); i++) composeReference(t, "MedicationDispense", "detectedIssue", element.getDetectedIssue().get(i), i);
    if (element.hasNotDoneElement())
        composeBoolean(t, "MedicationDispense", "notDone", element.getNotDoneElement(), -1);
    if (element.hasNotDoneReason())
        composeType(t, "MedicationDispense", "notDoneReason", element.getNotDoneReason(), -1);
    for (int i = 0; i < element.getEventHistory().size(); i++) composeReference(t, "MedicationDispense", "eventHistory", element.getEventHistory().get(i), i);
}