Examples with Medication org.hl7.fhir.r4.model.Medication used on opensource projects

Example 86 with Medication

use of org.hl7.fhir.r4.model.Medication in project nia-patient-switching-standard-adaptor by NHSDigital.

the class MedicationRequestMapperTest method When_MappingMedicationStatement_Expect_CorrectMappersToBeCalled.

@Test
public void When_MappingMedicationStatement_Expect_CorrectMappersToBeCalled() {
    var ehrExtract = unmarshallEhrExtract("ehrExtract1.xml");
    when(medicationRequestPlanMapper.mapToPlanMedicationRequest(any(), any(), any(), any())).thenReturn(new MedicationRequest());
    when(medicationRequestOrderMapper.mapToOrderMedicationRequest(any(), any(), any(), any())).thenReturn(new MedicationRequest());
    when(medicationStatementMapper.mapToMedicationStatement(any(), any(), any(), any(), any())).thenReturn(new MedicationStatement());
    when(medicationMapper.createMedication(any())).thenReturn(new Medication());
    var resources = medicationRequestMapper.mapResources(ehrExtract, (Patient) new Patient().setId(PATIENT_ID), List.of(), PRACTISE_CODE);
    verify(medicationRequestPlanMapper, times(DOUBLE_INVOCATION)).mapToPlanMedicationRequest(any(), any(), any(), any());
    verify(medicationRequestOrderMapper, times(SINGLE_INVOCATION)).mapToOrderMedicationRequest(any(), any(), any(), any());
    verify(medicationStatementMapper, times(DOUBLE_INVOCATION)).mapToMedicationStatement(any(), any(), any(), any(), any());
    verify(medicationMapper, times(SINGLE_INVOCATION)).createMedication(any());
    assertThat(resources.size()).isEqualTo(EXPECTED_RESOURCES_MAPPED);
    resources.stream().filter(resource -> ResourceType.MedicationRequest.equals(resource.getResourceType())).map(MedicationRequest.class::cast).forEach(medicationRequest -> {
        assertThat(medicationRequest.getSubject().getResource().getIdElement().getIdPart()).isEqualTo(PATIENT_ID);
        assertThat(medicationRequest.getAuthoredOnElement().getValue()).isEqualTo(EXPECTED_DATE_TIME_TYPE.getValue());
    });
    resources.stream().filter(resource -> ResourceType.MedicationStatement.equals(resource.getResourceType())).map(MedicationStatement.class::cast).forEach(medicationStatement -> {
        assertThat(medicationStatement.getSubject().getResource().getIdElement().getIdPart()).isEqualTo(PATIENT_ID);
        assertThat(medicationStatement.getDateAssertedElement().getValue()).isEqualTo(EXPECTED_DATE_TIME_TYPE.getValue());
    });
}

Example 87 with Medication

use of org.hl7.fhir.r4.model.Medication in project gpconnect-demonstrator by nhsconnect.

the class MedicationAdministrationResourceProvider method getMedicationAdministrationsForPatientId.

@Search
public List<MedicationAdministration> getMedicationAdministrationsForPatientId(@RequiredParam(name = "patient") String patientId) {
    ArrayList<MedicationAdministration> medicationAdministrations = new ArrayList<>();
    List<MedicationAdministrationDetail> medicationAdministrationDetailList = medicationAdministrationSearch.findMedicationAdministrationForPatient(Long.parseLong(patientId));
    if (medicationAdministrationDetailList != null && !medicationAdministrationDetailList.isEmpty()) {
        for (MedicationAdministrationDetail medicationAdministrationDetail : medicationAdministrationDetailList) {
            MedicationAdministration medicationAdministration = new MedicationAdministration();
            String resourceId = String.valueOf(medicationAdministrationDetail.getId());
            String versionId = String.valueOf(medicationAdministrationDetail.getLastUpdated().getTime());
            String resourceType = medicationAdministration.getResourceType().toString();
            IdType id = new IdType(resourceType, resourceId, versionId);
            medicationAdministration.setId(id);
            medicationAdministration.getMeta().setVersionId(versionId);
            medicationAdministration.getMeta().setLastUpdated(medicationAdministrationDetail.getLastUpdated());
            medicationAdministration.addDefinition(new Reference("Patient/" + medicationAdministrationDetail.getPatientId()));
            medicationAdministration.addDefinition(new Reference("Practitioner/" + medicationAdministrationDetail.getPractitionerId()));
            medicationAdministration.setPrescription(new Reference("MedicationOrder/" + medicationAdministrationDetail.getPrescriptionId()));
            medicationAdministration.setEffective(new DateType(medicationAdministrationDetail.getAdministrationDate()));
            medicationAdministration.setMedication(new Reference("Medication/" + medicationAdministrationDetail.getMedicationId()));
            medicationAdministrations.add(medicationAdministration);
        }
    }
    return medicationAdministrations;
}

Example 88 with Medication

use of org.hl7.fhir.r4.model.Medication in project gpconnect-demonstrator by nhsconnect.

the class MedicationOrderResourceProvider method medicationOrderDetailsToMedicationOrderResourceConverter.

private MedicationRequest medicationOrderDetailsToMedicationOrderResourceConverter(MedicationOrderDetails medicationOrderDetails) {
    MedicationRequest medicationOrder = new MedicationRequest();
    String resourceId = String.valueOf(medicationOrderDetails.getId());
    String versionId = String.valueOf(medicationOrderDetails.getLastUpdated().getTime());
    String resourceType = medicationOrder.getResourceType().toString();
    IdType id = new IdType(resourceType, resourceId, versionId);
    medicationOrder.setId(id);
    medicationOrder.getMeta().setVersionId(versionId);
    medicationOrder.getMeta().setLastUpdated(medicationOrderDetails.getLastUpdated());
    switch(medicationOrderDetails.getOrderStatus().toLowerCase(Locale.UK)) {
        case "active":
            medicationOrder.setStatus(MedicationRequestStatus.ACTIVE);
            break;
        case "completed":
            medicationOrder.setStatus(MedicationRequestStatus.COMPLETED);
            break;
        case "draft":
            medicationOrder.setStatus(MedicationRequestStatus.DRAFT);
            break;
        case "entered_in_error":
            medicationOrder.setStatus(MedicationRequestStatus.ENTEREDINERROR);
            break;
        case "on_hold":
            medicationOrder.setStatus(MedicationRequestStatus.ONHOLD);
            break;
        case "stopped":
            medicationOrder.setStatus(MedicationRequestStatus.STOPPED);
            break;
    }
    if (medicationOrderDetails.getPatientId() != null) {
        medicationOrder.setSubject(new Reference("Patient/" + medicationOrderDetails.getPatientId()));
    } else {
        medicationOrder.setSubject(new Reference());
    }
    medicationOrder.setRecorder(new Reference("Practitioner/" + medicationOrderDetails.getAutherId()));
    medicationOrder.setMedication(new Reference("Medication/" + medicationOrderDetails.getMedicationId()));
    medicationOrder.addDosageInstruction().setText(medicationOrderDetails.getDosageText());
    MedicationRequestDispenseRequestComponent dispenseRequest = new MedicationRequestDispenseRequestComponent();
    dispenseRequest.addExtension(new Extension(SystemURL.SD_EXTENSION_MEDICATION_QUANTITY_TEXT, new StringDt(medicationOrderDetails.getDispenseQuantityText())));
    dispenseRequest.addExtension(new Extension(SystemURL.SD_EXTENSION_PERSCRIPTION_REPEAT_REVIEW_DATE, new DateTimeDt(medicationOrderDetails.getDispenseReviewDate())));
    dispenseRequest.setId("Medication/" + medicationOrderDetails.getDispenseMedicationId());
    dispenseRequest.setNumberOfRepeatsAllowed(medicationOrderDetails.getDispenseRepeatsAllowed());
    medicationOrder.setDispenseRequest(dispenseRequest);
    return medicationOrder;
}

Example 89 with Medication

use of org.hl7.fhir.r4.model.Medication in project gpconnect-demonstrator by nhsconnect.

the class MedicationResourceProvider method getMedicationById.

@Read()
public Medication getMedicationById(@IdParam IdType medicationId) {
    MedicationEntity medicationEntity = medicationRepository.findOne(medicationId.getIdPartAsLong());
    if (medicationEntity == null) {
        OperationOutcome operationalOutcome = new OperationOutcome();
        operationalOutcome.addIssue().setSeverity(IssueSeverity.ERROR).setDiagnostics("No medication details found for ID: " + medicationId.getIdPart());
        throw new InternalErrorException("No medication details found for ID: " + medicationId.getIdPart(), operationalOutcome);
    }
    Medication medication = new Medication();
    String resourceId = String.valueOf(medicationEntity.getId());
    String versionId = String.valueOf(medicationEntity.getLastUpdated().getTime());
    String resourceType = medication.getResourceType().toString();
    IdType id = new IdType(resourceType, resourceId, versionId);
    medication.setId(id);
    medication.getMeta().setVersionId(versionId);
    medication.getMeta().setLastUpdated(medicationEntity.getLastUpdated());
    return medication;
}

Example 90 with Medication

use of org.hl7.fhir.r4.model.Medication in project gpconnect-demonstrator by nhsconnect.

the class MedicationRequestResourceProvider method getMedicationRequestFromDetail.

private MedicationRequest getMedicationRequestFromDetail(MedicationRequestDetail requestDetail) {
    MedicationRequest medicationRequest = new MedicationRequest();
    medicationRequest.setId(requestDetail.getId().toString());
    List<Identifier> identifiers = new ArrayList<>();
    Identifier identifier = new Identifier().setSystem("https://fhir.nhs.uk/Id/cross-care-setting-identifier").setValue(requestDetail.getGuid());
    identifiers.add(identifier);
    medicationRequest.setIdentifier(identifiers);
    medicationRequest.setMeta(new Meta().addProfile(SystemURL.SD_GPC_MEDICATION_REQUEST));
    setBasedOnReferences(medicationRequest, requestDetail);
    if (requestDetail.getPrescriptionTypeCode().contains("repeat")) {
        medicationRequest.setGroupIdentifier(new Identifier().setValue(requestDetail.getGroupIdentifier()));
    }
    try {
        medicationRequest.setStatus(MedicationRequestStatus.fromCode(requestDetail.getStatusCode()));
    } catch (FHIRException e) {
        throw new UnprocessableEntityException(e.getMessage());
    }
    try {
        medicationRequest.setIntent(MedicationRequestIntent.fromCode(requestDetail.getIntentCode()));
    } catch (FHIRException e) {
        throw new UnprocessableEntityException(e.getMessage());
    }
    if (requestDetail.getMedicationId() != null) {
        medicationRequest.setMedication(new Reference(new IdType("Medication", requestDetail.getMedicationId())));
    }
    if (requestDetail.getPatientId() != null) {
        medicationRequest.setSubject(new Reference(new IdType("Patient", requestDetail.getPatientId())));
    }
    if (requestDetail.getAuthorisingPractitionerId() != null) {
        medicationRequest.setRecorder(new Reference(new IdType("Practitioner", requestDetail.getAuthorisingPractitionerId())));
    }
    if (requestDetail.getPriorMedicationRequestId() != null) {
        medicationRequest.setPriorPrescription(new Reference(new IdType("MedicationRequest", requestDetail.getPriorMedicationRequestId())));
    }
    medicationRequest.setAuthoredOn(requestDetail.getAuthoredOn());
    medicationRequest.setDispenseRequest(getDispenseRequestComponent(requestDetail));
    // medicationRequest.setRequester(getRequesterComponent(requestDetail)); //TODO - spec needs to clarify whether this should be populated or not
    setReasonCodes(medicationRequest, requestDetail);
    setNotes(medicationRequest, requestDetail);
    if (medicationRequest.getIntent() != MedicationRequestIntent.ORDER) {
        setRepeatInformation(medicationRequest, requestDetail);
    }
    setPrescriptionType(medicationRequest, requestDetail);
    setStatusReason(medicationRequest, requestDetail);
    String dosageInstructionText = requestDetail.getDosageText();
    medicationRequest.addDosageInstruction(new Dosage().setText(dosageInstructionText == null || dosageInstructionText.trim().isEmpty() ? NO_INFORMATION_AVAILABLE : dosageInstructionText).setPatientInstruction(requestDetail.getDosageInstructions()));
    return medicationRequest;
}