Examples with Medication org.hl7.fhir.r4.model.Medication used on opensource projects

Example 71 with Medication

use of org.hl7.fhir.r4.model.Medication in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeMedicationMedicationPackageComponent.

protected void composeMedicationMedicationPackageComponent(Complex parent, String parentType, String name, Medication.MedicationPackageComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "package", name, element, index);
    if (element.hasContainer())
        composeCodeableConcept(t, "Medication", "container", element.getContainer(), -1);
    for (int i = 0; i < element.getContent().size(); i++) composeMedicationMedicationPackageContentComponent(t, "Medication", "content", element.getContent().get(i), i);
}

Example 72 with Medication

use of org.hl7.fhir.r4.model.Medication in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeMedicationOrderMedicationOrderDispenseRequestComponent.

protected void composeMedicationOrderMedicationOrderDispenseRequestComponent(Complex parent, String parentType, String name, MedicationOrder.MedicationOrderDispenseRequestComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "dispenseRequest", name, element, index);
    if (element.hasMedication())
        composeType(t, "MedicationOrder", "medication", element.getMedication(), -1);
    if (element.hasValidityPeriod())
        composePeriod(t, "MedicationOrder", "validityPeriod", element.getValidityPeriod(), -1);
    if (element.hasNumberOfRepeatsAllowedElement())
        composePositiveInt(t, "MedicationOrder", "numberOfRepeatsAllowed", element.getNumberOfRepeatsAllowedElement(), -1);
    if (element.hasQuantity())
        composeQuantity(t, "MedicationOrder", "quantity", element.getQuantity(), -1);
    if (element.hasExpectedSupplyDuration())
        composeQuantity(t, "MedicationOrder", "expectedSupplyDuration", element.getExpectedSupplyDuration(), -1);
}

Example 73 with Medication

use of org.hl7.fhir.r4.model.Medication in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeMedicationOrder.

protected void composeMedicationOrder(Complex parent, String parentType, String name, MedicationOrder element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "MedicationOrder", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "MedicationOrder", "identifier", element.getIdentifier().get(i), i);
    if (element.hasStatusElement())
        composeEnum(t, "MedicationOrder", "status", element.getStatusElement(), -1);
    if (element.hasMedication())
        composeType(t, "MedicationOrder", "medication", element.getMedication(), -1);
    if (element.hasPatient())
        composeReference(t, "MedicationOrder", "patient", element.getPatient(), -1);
    if (element.hasEncounter())
        composeReference(t, "MedicationOrder", "encounter", element.getEncounter(), -1);
    if (element.hasDateWrittenElement())
        composeDateTime(t, "MedicationOrder", "dateWritten", element.getDateWrittenElement(), -1);
    if (element.hasPrescriber())
        composeReference(t, "MedicationOrder", "prescriber", element.getPrescriber(), -1);
    for (int i = 0; i < element.getReasonCode().size(); i++) composeCodeableConcept(t, "MedicationOrder", "reasonCode", element.getReasonCode().get(i), i);
    for (int i = 0; i < element.getReasonReference().size(); i++) composeReference(t, "MedicationOrder", "reasonReference", element.getReasonReference().get(i), i);
    if (element.hasDateEndedElement())
        composeDateTime(t, "MedicationOrder", "dateEnded", element.getDateEndedElement(), -1);
    if (element.hasReasonEnded())
        composeCodeableConcept(t, "MedicationOrder", "reasonEnded", element.getReasonEnded(), -1);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "MedicationOrder", "note", element.getNote().get(i), i);
    for (int i = 0; i < element.getDosageInstruction().size(); i++) composeMedicationOrderMedicationOrderDosageInstructionComponent(t, "MedicationOrder", "dosageInstruction", element.getDosageInstruction().get(i), i);
    if (element.hasDispenseRequest())
        composeMedicationOrderMedicationOrderDispenseRequestComponent(t, "MedicationOrder", "dispenseRequest", element.getDispenseRequest(), -1);
    if (element.hasSubstitution())
        composeMedicationOrderMedicationOrderSubstitutionComponent(t, "MedicationOrder", "substitution", element.getSubstitution(), -1);
    if (element.hasPriorPrescription())
        composeReference(t, "MedicationOrder", "priorPrescription", element.getPriorPrescription(), -1);
}

Example 74 with Medication

use of org.hl7.fhir.r4.model.Medication in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeMedicationAdministration.

protected void composeMedicationAdministration(Complex parent, String parentType, String name, MedicationAdministration element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "MedicationAdministration", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "MedicationAdministration", "identifier", element.getIdentifier().get(i), i);
    if (element.hasStatusElement())
        composeEnum(t, "MedicationAdministration", "status", element.getStatusElement(), -1);
    if (element.hasMedication())
        composeType(t, "MedicationAdministration", "medication", element.getMedication(), -1);
    if (element.hasPatient())
        composeReference(t, "MedicationAdministration", "patient", element.getPatient(), -1);
    if (element.hasEncounter())
        composeReference(t, "MedicationAdministration", "encounter", element.getEncounter(), -1);
    if (element.hasEffectiveTime())
        composeType(t, "MedicationAdministration", "effectiveTime", element.getEffectiveTime(), -1);
    if (element.hasPractitioner())
        composeReference(t, "MedicationAdministration", "practitioner", element.getPractitioner(), -1);
    if (element.hasPrescription())
        composeReference(t, "MedicationAdministration", "prescription", element.getPrescription(), -1);
    if (element.hasWasNotGivenElement())
        composeBoolean(t, "MedicationAdministration", "wasNotGiven", element.getWasNotGivenElement(), -1);
    for (int i = 0; i < element.getReasonNotGiven().size(); i++) composeCodeableConcept(t, "MedicationAdministration", "reasonNotGiven", element.getReasonNotGiven().get(i), i);
    for (int i = 0; i < element.getReasonGiven().size(); i++) composeCodeableConcept(t, "MedicationAdministration", "reasonGiven", element.getReasonGiven().get(i), i);
    for (int i = 0; i < element.getDevice().size(); i++) composeReference(t, "MedicationAdministration", "device", element.getDevice().get(i), i);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "MedicationAdministration", "note", element.getNote().get(i), i);
    if (element.hasDosage())
        composeMedicationAdministrationMedicationAdministrationDosageComponent(t, "MedicationAdministration", "dosage", element.getDosage(), -1);
}

Example 75 with Medication

use of org.hl7.fhir.r4.model.Medication in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method execute.

public void execute(String[] args) throws FileNotFoundException, IOException, FHIRException {
    System.out.println("loading context");
    context = SimpleWorkerContext.fromPack(Utilities.path(root, "validation.zip"));
    comp = new ProfileComparer(context);
    compare("patient-daf-dafpatient.profile.xml", "patient-qicore-qicore-patient.profile.xml");
    compare("encounter-daf-dafencounter.profile.xml", "encounter-qicore-qicore-encounter.profile.xml");
    compare("substance-daf-dafsubstance.profile.xml", "substance-qicore-qicore-substance.profile.xml");
    compare("medication-daf-dafmedication.profile.xml", "medication-qicore-qicore-medication.profile.xml");
    compare("procedure-daf-dafprocedure.profile.xml", "procedure-qicore-qicore-procedure.profile.xml");
    compare("familymemberhistory-daf-daffamilymemberhistory.profile.xml", "familymemberhistory-qicore-qicore-familymemberhistory.profile.xml");
    compare("immunization-daf-dafimmunization.profile.xml", "immunization-qicore-qicore-immunization.profile.xml");
    compare("condition-daf-dafcondition.profile.xml", "condition-qicore-qicore-condition.profile.xml");
    compare("allergyintolerance-daf-dafallergyintolerance.profile.xml", "allergyintolerance-qicore-qicore-allergyintolerance.profile.xml");
    compare("medicationadministration-daf-dafmedicationadministration.profile.xml", "medicationadministration-qicore-qicore-medicationadministration.profile.xml");
    compare("medicationdispense-daf-dafmedicationdispense.profile.xml", "medicationdispense-qicore-qicore-medicationdispense.profile.xml");
    compare("medicationprescription-daf-dafmedicationprescription.profile.xml", "medicationprescription-qicore-qicore-medicationprescription.profile.xml");
    compare("medicationstatement-daf-dafmedicationstatement.profile.xml", "medicationstatement-qicore-qicore-medicationstatement.profile.xml");
    compare("observation-daf-smokingstatus-dafsmokingstatus.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    compare("observation-daf-vitalsigns-dafvitalsigns.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    // compare("observation-daf-results-dafresultobs.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    // compare("diagnosticorder-daf-dafdiagnosticorder.profile.xml", "diagnosticorder-qicore-qicore-diagnosticorder.profile.xml");
    // compare("diagnosticreport-daf-dafdiagnosticreport.profile.xml", "diagnosticreport-qicore-qicore-diagnosticreport.profile.xml");
    System.out.println("processing output");
    for (ProfileComparison outcome : comp.getComparisons()) {
        if (outcome.getSubset() != null)
            new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "intersection-" + outcome.getId() + ".xml")), outcome.getSubset());
        if (outcome.getSuperset() != null)
            new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "union-" + outcome.getId() + ".xml")), outcome.getSuperset());
        System.out.println("\r\n" + outcome.getId() + ": Comparison of " + outcome.getLeft().getUrl() + " and " + outcome.getRight().getUrl());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.INFORMATION)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.WARNING)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.ERROR)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.FATAL)
            System.out.println(vm.summary());
        System.out.println("done. " + Integer.toString(outcome.getMessages().size()) + " messages");
        System.out.println("=================================================================");
    }
}