Examples with FINAL org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL used on opensource projects

Example 26 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project ab2d by CMSgov.

the class AggregatorJobTest method createEob.

ExplanationOfBenefit createEob(int patientId) throws ParseException {
    final SimpleDateFormat SDF = new SimpleDateFormat("MM/dd/yyyy");
    ExplanationOfBenefit eob = (ExplanationOfBenefit) EobTestDataUtil.createEOB();
    eob.getBillablePeriod().setStart(SDF.parse("02/13/1970"));
    eob.getBillablePeriod().setEnd(new Date());
    eob.getMeta().setLastUpdated(new Date());
    eob.setPatient(new org.hl7.fhir.dstu3.model.Reference().setReference("Patient/" + patientId));
    return eob;
}

Example 27 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project integration-adaptor-111 by nhsconnect.

the class CompositionMapper method mapComposition.

public Composition mapComposition(POCDMT000002UK01ClinicalDocument1 clinicalDocument, Encounter encounter, List<CarePlan> carePlans, List<QuestionnaireResponse> questionnaireResponseList, ReferralRequest referralRequest, List<PractitionerRole> practitionerRoles) {
    Composition composition = new Composition();
    composition.setIdElement(resourceUtil.newRandomUuid());
    Identifier docIdentifier = new Identifier();
    docIdentifier.setUse(USUAL);
    docIdentifier.setValue(clinicalDocument.getSetId().getRoot());
    composition.setTitle(COMPOSITION_TITLE).setType(createCodeableConcept()).setStatus(FINAL).setEncounter(resourceUtil.createReference(encounter)).setSubject(encounter.getSubject()).setDateElement(DateUtil.parse(clinicalDocument.getEffectiveTime().getValue())).setIdentifier(docIdentifier);
    if (clinicalDocument.getConfidentialityCode().isSetCode()) {
        composition.setConfidentiality(Composition.DocumentConfidentiality.valueOf(clinicalDocument.getConfidentialityCode().getCode()));
    }
    if (isNotEmpty(clinicalDocument.getRelatedDocumentArray()) && clinicalDocument.getRelatedDocumentArray(0).getParentDocument().getIdArray(0).isSetRoot()) {
        Identifier relatedDocIdentifier = new Identifier();
        relatedDocIdentifier.setUse(USUAL);
        relatedDocIdentifier.setValue(clinicalDocument.getRelatedDocumentArray(0).getParentDocument().getIdArray(0).getRoot());
        composition.addRelatesTo().setCode(Composition.DocumentRelationshipType.REPLACES).setTarget(relatedDocIdentifier);
    }
    practitionerRoles.stream().forEach(it -> composition.addAuthor(it.getPractitioner()));
    if (clinicalDocument.getComponent().isSetStructuredBody()) {
        for (POCDMT000002UK01Component3 component3 : clinicalDocument.getComponent().getStructuredBody().getComponentArray()) {
            SectionComponent sectionComponent = new SectionComponent();
            addSectionChildren(sectionComponent, component3.getSection());
            composition.addSection(sectionComponent);
        }
    }
    for (CarePlan carePlan : carePlans) {
        composition.addSection(buildSectionComponentFromResource(carePlan));
    }
    if (!referralRequest.isEmpty()) {
        composition.addSection(buildSectionComponentFromResource(referralRequest));
    }
    if (questionnaireResponseList != null) {
        addPathwaysToSection(composition, questionnaireResponseList);
    }
    return composition;
}

Example 28 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project integration-adaptor-111 by nhsconnect.

the class ObservationMapper method createObservation.

private Observation createObservation(Encounter encounter, List<String> sectionText) {
    Observation observation = new Observation();
    observation.setIdElement(resourceUtil.newRandomUuid());
    observation.setStatus(FINAL);
    Coding coding = new Coding().setCode(PRESENTING_COMPLAINT_CODE).setDisplay(PRESENTING_COMPLAINT_DISPLAY).setSystem(SNOMED_SYSTEM);
    observation.setCode(new CodeableConcept(coding));
    observation.setValue(new StringType(join(sectionText, '\n')));
    observation.setContext(resourceUtil.createReference(encounter));
    observation.setSubject(encounter.getSubject());
    return observation;
}

Example 29 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpansionCache method loadCache.

private void loadCache() throws FHIRFormatError, IOException {
    File[] files = new File(cacheFolder).listFiles();
    for (File f : files) {
        if (f.getName().endsWith(".xml")) {
            final FileInputStream is = new FileInputStream(f);
            try {
                Resource r = context.newXmlParser().setOutputStyle(OutputStyle.PRETTY).parse(is);
                if (r instanceof OperationOutcome) {
                    OperationOutcome oo = (OperationOutcome) r;
                    expansions.put(ToolingExtensions.getExtension(oo, VS_ID_EXT).getValue().toString(), new ValueSetExpansionOutcome(new XhtmlComposer(true, false).composePlainText(oo.getText().getDiv())));
                } else {
                    ValueSet vs = (ValueSet) r;
                    expansions.put(vs.getUrl(), new ValueSetExpansionOutcome(vs, null));
                }
            } finally {
                IOUtils.closeQuietly(is);
            }
        }
    }
}

Example 30 with FINAL

use of org.hl7.fhir.r4.model.Observation.ObservationStatus.FINAL in project org.hl7.fhir.core by hapifhir.

the class JavaResourceGenerator method writeSearchParameterField.

// private void generateImpl(String namenn, ResourceDefn resourceDefn, String jn, ElementDefinition root, String version, Date genDate) throws Exception {
// // TODO - restore this
// //    write("  public "+namenn+" get"+namenn+"() {\r\n");
// //    write("    return new "+jn+namenn+"Impl(this);\r\n");
// //    write("  }\r\n");
// //
// //    // now, generate the implementation
// //    JavaPatternImplGenerator jrg = new JavaPatternImplGenerator(new FileOutputStream(javaPatternDir+jn+namenn+"Impl.java"), definitions, adornments, enumInfo);
// //    jrg.generate(resourceDefn.getRoot(), jn, JavaGenClass.Resource, null, genDate, version, false, null, null, namenn, root);
// //    jrg.close();
// //
// }
private void writeSearchParameterField(String name, JavaGenClass clss, boolean isAbstract, SearchParameter sp, String code, String[] theCompositeOf, List<SearchParameter> searchParams, String rn) throws IOException {
    String constName = cleanSpName(code).toUpperCase();
    /*
     * SearchParamDefinition (SP_[name])
     */
    write(" /**\r\n");
    write("   * Search parameter: <b>" + code + "</b>\r\n");
    write("   * <p>\r\n");
    write("   * Description: <b>" + sp.getDescription() + "</b><br>\r\n");
    write("   * Type: <b>" + sp.getType().toCode() + "</b><br>\r\n");
    write("   * Path: <b>" + sp.getExpression() + "</b><br>\r\n");
    write("   * </p>\r\n");
    write("   */\r\n");
    write("  @SearchParamDefinition(name=\"" + code + "\", path=\"" + defaultString(sp.getExpression()) + "\", description=\"" + Utilities.escapeJava(sp.getDescription()) + "\", type=\"" + sp.getType().toCode() + "\"");
    if (theCompositeOf != null && theCompositeOf.length > 0) {
        write(", compositeOf={");
        for (int i = 0; i < theCompositeOf.length; i++) {
            if (i > 0) {
                write(", ");
            }
            write("\"" + theCompositeOf[i] + "\"");
        }
        write("}");
    }
    Set<String> providesMembershipIn = new TreeSet<String>();
    for (CompartmentDefinition next : this.definitions.getCompartments().getList()) {
        for (CompartmentDefinitionResourceComponent nextEntry : next.getResource()) {
            if (nextEntry.getCode().equals(upFirst(name))) {
                for (StringType nextPart : nextEntry.getParam()) {
                    if (nextPart.toString().equals(code)) {
                        providesMembershipIn.add(next.getName());
                    }
                }
            }
        }
    }
    if (providesMembershipIn.size() > 0) {
        write(", providesMembershipIn={ ");
        boolean first = true;
        for (String next : providesMembershipIn) {
            if (first) {
                first = false;
            } else {
                write(", ");
            }
            write("@ca.uhn.fhir.model.api.annotation.Compartment(name=\"" + upFirst(next) + "\")");
        }
        write(" }");
    }
    Set<String> targets = new TreeSet<>();
    for (CodeType c : sp.getTarget()) {
        targets.add(c.asStringValue());
    }
    if (targets != null && !targets.isEmpty() && !targets.contains("Any")) {
        write(", target={");
        boolean first = true;
        for (String nextTarget : targets) {
            if (first) {
                first = false;
            } else {
                write(", ");
            }
            write("List".equals(nextTarget) ? "ListResource" : nextTarget);
            write(".class");
        }
        write(" }");
    }
    write(" )\r\n");
    write("  public static final String SP_" + constName + " = \"" + code + "\";\r\n");
    String genericTypes = "";
    if (theCompositeOf != null && theCompositeOf.length > 0) {
        SearchParameter typeDef0 = findSearchParam(searchParams, theCompositeOf[0]);
        SearchParameter typeDef1 = findSearchParam(searchParams, theCompositeOf[1]);
        genericTypes = "<ca.uhn.fhir.rest.gclient." + upFirst(typeDef0.getType().toCode()) + "ClientParam" + ", ca.uhn.fhir.rest.gclient." + upFirst(typeDef1.getType().toCode()) + "ClientParam>";
    }
    /*
     * Client parameter ([name])
     */
    write(" /**\r\n");
    write("   * <b>Fluent Client</b> search parameter constant for <b>" + code + "</b>\r\n");
    write("   * <p>\r\n");
    write("   * Description: <b>" + sp.getDescription() + "</b><br>\r\n");
    write("   * Type: <b>" + sp.getType().toCode() + "</b><br>\r\n");
    write("   * Path: <b>" + sp.getExpression() + "</b><br>\r\n");
    write("   * </p>\r\n");
    write("   */\r\n");
    write("  public static final ca.uhn.fhir.rest.gclient." + upFirst(sp.getType().toCode()) + "ClientParam" + genericTypes + " " + constName + " = new ca.uhn.fhir.rest.gclient." + upFirst(sp.getType().toCode()) + "ClientParam" + genericTypes + "(SP_" + constName + ");\r\n\r\n");
    if (sp.getType() == SearchParamType.REFERENCE && clss == JavaGenClass.Resource && !isAbstract) {
        String incName = upFirst(name) + ":" + code;
        write("/**\r\n");
        write("   * Constant for fluent queries to be used to add include statements. Specifies\r\n");
        write("   * the path value of \"<b>" + incName + "</b>\".\r\n");
        write("   */\r\n");
        write("  public static final ca.uhn.fhir.model.api.Include INCLUDE_" + cleanSpName(code).toUpperCase() + " = new ca.uhn.fhir.model.api.Include(\"" + incName + "\").toLocked();\r\n\r\n");
    }
}