Examples with POCDMT000002UK01Component3 uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component3 used on opensource projects

Example 1 with POCDMT000002UK01Component3

use of uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component3 in project integration-adaptor-111 by nhsconnect.

the class AppointmentServiceTest method setUp.

@BeforeEach
public void setUp() {
    clinicalDocument1 = mock(POCDMT000002UK01ClinicalDocument1.class);
    POCDMT000002UK01Component2 component2 = mock(POCDMT000002UK01Component2.class);
    POCDMT000002UK01StructuredBody structuredBody = mock(POCDMT000002UK01StructuredBody.class);
    POCDMT000002UK01Component3 component3 = mock(POCDMT000002UK01Component3.class);
    section = mock(POCDMT000002UK01Section.class);
    patient = mock(Reference.class);
    when(clinicalDocument1.getComponent()).thenReturn(component2);
    when(component2.getStructuredBody()).thenReturn(structuredBody);
    when(structuredBody.getComponentArray()).thenReturn(new POCDMT000002UK01Component3[] { component3 });
    when(component3.getSection()).thenReturn(section);
}

Example 2 with POCDMT000002UK01Component3

use of uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component3 in project integration-adaptor-111 by nhsconnect.

the class CompositionMapper method mapComposition.

public Composition mapComposition(POCDMT000002UK01ClinicalDocument1 clinicalDocument, Encounter encounter, List<CarePlan> carePlans, List<QuestionnaireResponse> questionnaireResponseList, ReferralRequest referralRequest, List<PractitionerRole> practitionerRoles) {
    Composition composition = new Composition();
    composition.setIdElement(resourceUtil.newRandomUuid());
    Identifier docIdentifier = new Identifier();
    docIdentifier.setUse(USUAL);
    docIdentifier.setValue(clinicalDocument.getSetId().getRoot());
    composition.setTitle(COMPOSITION_TITLE).setType(createCodeableConcept()).setStatus(FINAL).setEncounter(resourceUtil.createReference(encounter)).setSubject(encounter.getSubject()).setDateElement(DateUtil.parse(clinicalDocument.getEffectiveTime().getValue())).setIdentifier(docIdentifier);
    if (clinicalDocument.getConfidentialityCode().isSetCode()) {
        composition.setConfidentiality(Composition.DocumentConfidentiality.valueOf(clinicalDocument.getConfidentialityCode().getCode()));
    }
    if (isNotEmpty(clinicalDocument.getRelatedDocumentArray()) && clinicalDocument.getRelatedDocumentArray(0).getParentDocument().getIdArray(0).isSetRoot()) {
        Identifier relatedDocIdentifier = new Identifier();
        relatedDocIdentifier.setUse(USUAL);
        relatedDocIdentifier.setValue(clinicalDocument.getRelatedDocumentArray(0).getParentDocument().getIdArray(0).getRoot());
        composition.addRelatesTo().setCode(Composition.DocumentRelationshipType.REPLACES).setTarget(relatedDocIdentifier);
    }
    practitionerRoles.stream().forEach(it -> composition.addAuthor(it.getPractitioner()));
    if (clinicalDocument.getComponent().isSetStructuredBody()) {
        for (POCDMT000002UK01Component3 component3 : clinicalDocument.getComponent().getStructuredBody().getComponentArray()) {
            SectionComponent sectionComponent = new SectionComponent();
            addSectionChildren(sectionComponent, component3.getSection());
            composition.addSection(sectionComponent);
        }
    }
    for (CarePlan carePlan : carePlans) {
        composition.addSection(buildSectionComponentFromResource(carePlan));
    }
    if (!referralRequest.isEmpty()) {
        composition.addSection(buildSectionComponentFromResource(referralRequest));
    }
    if (questionnaireResponseList != null) {
        addPathwaysToSection(composition, questionnaireResponseList);
    }
    return composition;
}

Example 3 with POCDMT000002UK01Component3

use of uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component3 in project integration-adaptor-111 by nhsconnect.

the class ConsentMapperTest method setUp.

@BeforeEach
public void setUp() {
    POCDMT000002UK01Component2 component2 = mock(POCDMT000002UK01Component2.class);
    POCDMT000002UK01Component3 component3 = mock(POCDMT000002UK01Component3.class);
    POCDMT000002UK01Authorization authorization = mock(POCDMT000002UK01Authorization.class);
    POCDMT000002UK01StructuredBody structuredBody = mock(POCDMT000002UK01StructuredBody.class);
    code = CE.Factory.newInstance();
    code.setCodeSystem(ITK_SNOMED);
    code.setCode(INFORMATION_ADVICE_GIVEN);
    code.setDisplayName(CODE_DISPLAY_NAME);
    title.setLanguage(LANG);
    cs.setCode(LANG);
    when(clinicalDocument.getComponent()).thenReturn(component2);
    when(clinicalDocument.sizeOfAuthorizationArray()).thenReturn(1);
    when(clinicalDocument.getAuthorizationArray()).thenReturn(new POCDMT000002UK01Authorization[] { authorization });
    when(authorization.getConsent()).thenReturn(authConsent);
    when(authConsent.isSetCode()).thenReturn(true);
    when(authConsent.getCode()).thenReturn(code);
    when(component2.getStructuredBody()).thenReturn(structuredBody);
    when(component3.getSection()).thenReturn(section);
    when(component5.getSection()).thenReturn(section);
    when(structuredBody.getComponentArray()).thenReturn(new POCDMT000002UK01Component3[] { component3 });
    when(resourceUtil.newRandomUuid()).thenReturn(new IdType(RANDOM_UUID));
}

Example 4 with POCDMT000002UK01Component3

use of uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component3 in project integration-adaptor-111 by nhsconnect.

the class ObservationMapper method mapObservations.

public List<Observation> mapObservations(POCDMT000002UK01ClinicalDocument1 clinicalDocument, Encounter encounter) {
    List<Observation> observations = new ArrayList<>();
    POCDMT000002UK01Component2 component = clinicalDocument.getComponent();
    if (component.isSetStructuredBody()) {
        POCDMT000002UK01Component3[] components = component.getStructuredBody().getComponentArray();
        for (POCDMT000002UK01Component3 component3 : components) {
            POCDMT000002UK01Section section = component3.getSection();
            for (POCDMT000002UK01Component5 component5 : section.getComponentArray()) {
                ST title = component5.getSection().getTitle();
                if (nodeUtil.getNodeValueString(title).matches(PATIENTS_CONDITION_REGEXP)) {
                    StrucDocContent[] contentArray = component5.getSection().getText().getContentArray();
                    List<String> sectionText = stream(contentArray).map(it -> nodeUtil.getNodeValueString(it)).collect(toList());
                    observations.add(createObservation(encounter, sectionText));
                }
            }
        }
    }
    return observations;
}

Example 5 with POCDMT000002UK01Component3

use of uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component3 in project integration-adaptor-111 by nhsconnect.

the class EncounterMapperTest method mockEncounterTypeAndReason.

private void mockEncounterTypeAndReason() {
    String encounterText = "Encounter text";
    POCDMT000002UK01Component3[] componentArray = new POCDMT000002UK01Component3[1];
    componentArray[0] = component3;
    POCDMT000002UK01Entry[] entryArray = new POCDMT000002UK01Entry[1];
    entryArray[0] = entry;
    when(clinicalDocument.getComponent()).thenReturn(component2);
    when(component2.isSetStructuredBody()).thenReturn(true);
    when(component2.getStructuredBody()).thenReturn(structuredBody);
    when(structuredBody.getComponentArray()).thenReturn(componentArray);
    when(component3.getSection()).thenReturn(section01);
    when(section01.getEntryArray()).thenReturn(entryArray);
    when(entry.getEncounter()).thenReturn(encounter);
    when(entry.isSetEncounter()).thenReturn(true);
    when(encounter.isSetText()).thenReturn(true);
    when(encounter.getText()).thenReturn(encounterTextED);
    when(nodeUtil.getNodeValueString(any())).thenReturn(encounterText);
    when(resourceUtil.newRandomUuid()).thenReturn(new IdType(RANDOM_UUID));
}